{"id":"https://openalex.org/W4392556190","doi":"https://doi.org/10.1186/s13677-024-00612-0","title":"RNA-RBP interactions recognition using multi-label learning and feature attention allocation","display_name":"RNA-RBP interactions recognition using multi-label learning and feature attention allocation","publication_year":2024,"publication_date":"2024-03-07","ids":{"openalex":"https://openalex.org/W4392556190","doi":"https://doi.org/10.1186/s13677-024-00612-0"},"language":"en","primary_location":{"id":"doi:10.1186/s13677-024-00612-0","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s13677-024-00612-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13677-024-00612-0.pdf","source":{"id":"https://openalex.org/S2486819371","display_name":"Journal of Cloud Computing Advances Systems and Applications","issn_l":"2192-113X","issn":["2192-113X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cloud Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s13677-024-00612-0.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069039041","display_name":"Huirui Han","orcid":"https://orcid.org/0000-0002-6932-3209"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Huirui Han","raw_affiliation_strings":["College of Biomedical Information and Engineering, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, China"],"affiliations":[{"raw_affiliation_string":"College of Biomedical Information and Engineering, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036697759","display_name":"Bandeh Ali Talpur","orcid":"https://orcid.org/0000-0002-5047-9254"},"institutions":[{"id":"https://openalex.org/I205274468","display_name":"Trinity College Dublin","ror":"https://ror.org/02tyrky19","country_code":"IE","type":"education","lineage":["https://openalex.org/I205274468"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Bandeh Ali Talpur","raw_affiliation_strings":["School of Computer Science and Statistics, Trinity College Dublin, Dublin, Ireland"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Statistics, Trinity College Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I205274468"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100431863","display_name":"Wei Liu","orcid":"https://orcid.org/0000-0002-7908-8476"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Liu","raw_affiliation_strings":["College of Biomedical Information and Engineering, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, China"],"affiliations":[{"raw_affiliation_string":"College of Biomedical Information and Engineering, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100695804","display_name":"Limei Wang","orcid":"https://orcid.org/0000-0002-5041-2287"},"institutions":[{"id":"https://openalex.org/I79731167","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55","country_code":"CN","type":"education","lineage":["https://openalex.org/I79731167"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Limei Wang","raw_affiliation_strings":["College of Biomedical Information and Engineering, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, China"],"affiliations":[{"raw_affiliation_string":"College of Biomedical Information and Engineering, Hainan Engineering Research Center for Health Big Data, Hainan Medical University, Haikou, China","institution_ids":["https://openalex.org/I79731167"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101660253","display_name":"Bilal Ahmed","orcid":"https://orcid.org/0000-0002-6686-8297"},"institutions":[{"id":"https://openalex.org/I119004910","display_name":"Silesian University of Technology","ror":"https://ror.org/02dyjk442","country_code":"PL","type":"education","lineage":["https://openalex.org/I119004910"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Bilal Ahmed","raw_affiliation_strings":["Department of Structural Engineering, Faculty of Civil Engineering, Doctoral School, Akademicka 2, Silesian University of Technology, 44-100, Gliwice, Poland"],"affiliations":[{"raw_affiliation_string":"Department of Structural Engineering, Faculty of Civil Engineering, Doctoral School, Akademicka 2, Silesian University of Technology, 44-100, Gliwice, Poland","institution_ids":["https://openalex.org/I119004910"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092439925","display_name":"Nadia Sarhan","orcid":"https://orcid.org/0009-0006-2493-2795"},"institutions":[{"id":"https://openalex.org/I28022161","display_name":"King Saud University","ror":"https://ror.org/02f81g417","country_code":"SA","type":"education","lineage":["https://openalex.org/I28022161"]},{"id":"https://openalex.org/I4210165529","display_name":"University of Business and Technology","ror":"https://ror.org/05tcr1n44","country_code":"SA","type":"education","lineage":["https://openalex.org/I4210165529"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Nadia Sarhan","raw_affiliation_strings":["Department of Quantitative Analysis, College of Business Administration, King Saud University, Riyadh, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Department of Quantitative Analysis, College of Business Administration, King Saud University, Riyadh, Saudi Arabia","institution_ids":["https://openalex.org/I28022161","https://openalex.org/I4210165529"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108971175","display_name":"Emad Mahrous Awwad","orcid":null},"institutions":[{"id":"https://openalex.org/I28022161","display_name":"King Saud University","ror":"https://ror.org/02f81g417","country_code":"SA","type":"education","lineage":["https://openalex.org/I28022161"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Emad Mahrous Awwad","raw_affiliation_strings":["Department of Electrical Engineering, College of Engineering, King Saud University, P.O. Box 800, 11421, Riyadh, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, College of Engineering, King Saud University, P.O. Box 800, 11421, Riyadh, Saudi Arabia","institution_ids":["https://openalex.org/I28022161"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5069039041"],"corresponding_institution_ids":["https://openalex.org/I79731167"],"apc_list":{"value":990,"currency":"GBP","value_usd":1214},"apc_paid":{"value":990,"currency":"GBP","value_usd":1214},"fwci":0.4506,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.61328699,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"13","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7170794010162354},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.6915770769119263},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.47411373257637024},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4071434736251831},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.0815645158290863}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7170794010162354},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.6915770769119263},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.47411373257637024},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4071434736251831},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0815645158290863},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/s13677-024-00612-0","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s13677-024-00612-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13677-024-00612-0.pdf","source":{"id":"https://openalex.org/S2486819371","display_name":"Journal of Cloud Computing Advances Systems and Applications","issn_l":"2192-113X","issn":["2192-113X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cloud Computing","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:2109f4023e0740fc852368868ba3a29a","is_oa":true,"landing_page_url":"https://doaj.org/article/2109f4023e0740fc852368868ba3a29a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cloud Computing: Advances, Systems and Applications, Vol 13, Iss 1, Pp 1-13 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13677-024-00612-0","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s13677-024-00612-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13677-024-00612-0.pdf","source":{"id":"https://openalex.org/S2486819371","display_name":"Journal of Cloud Computing Advances Systems and Applications","issn_l":"2192-113X","issn":["2192-113X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cloud Computing","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1121271761","display_name":null,"funder_award_id":"Program","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2087396116","display_name":null,"funder_award_id":"China","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2143727755","display_name":null,"funder_award_id":"HYPY202003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2429935466","display_name":null,"funder_award_id":"RSPD2024R1052","funder_id":"https://openalex.org/F4320321145","funder_display_name":"King Saud University"},{"id":"https://openalex.org/G3317480652","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5994120800","display_name":null,"funder_award_id":"Natural","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6275062119","display_name":null,"funder_award_id":"202003","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7724575519","display_name":null,"funder_award_id":"HYPY202003","funder_id":"https://openalex.org/F4320324785","funder_display_name":"Hainan Medical University"},{"id":"https://openalex.org/G8239988234","display_name":null,"funder_award_id":"Riyadh","funder_id":"https://openalex.org/F4320321145","funder_display_name":"King Saud University"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321145","display_name":"King Saud University","ror":"https://ror.org/02f81g417"},{"id":"https://openalex.org/F4320324785","display_name":"Hainan Medical University","ror":"https://ror.org/004eeze55"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4392556190.pdf","grobid_xml":"https://content.openalex.org/works/W4392556190.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1638081485","https://openalex.org/W2101565577","https://openalex.org/W2119501676","https://openalex.org/W2323943568","https://openalex.org/W2342867827","https://openalex.org/W2553881340","https://openalex.org/W2760202013","https://openalex.org/W2906566809","https://openalex.org/W2923637009","https://openalex.org/W2951748044","https://openalex.org/W2963680343","https://openalex.org/W2964121744","https://openalex.org/W2966027244","https://openalex.org/W2997372097","https://openalex.org/W3010891052","https://openalex.org/W3049756659","https://openalex.org/W3112301045","https://openalex.org/W3113348190","https://openalex.org/W3117037461","https://openalex.org/W3122012821","https://openalex.org/W3126817395","https://openalex.org/W3133557554","https://openalex.org/W3159565895","https://openalex.org/W3208227361","https://openalex.org/W4210578073","https://openalex.org/W4220955350","https://openalex.org/W4283328938","https://openalex.org/W4293515540","https://openalex.org/W4313256906","https://openalex.org/W4319826559","https://openalex.org/W4366000389","https://openalex.org/W4384201530","https://openalex.org/W4386935114","https://openalex.org/W4388215032","https://openalex.org/W4389269199","https://openalex.org/W6828894009"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4244478748","https://openalex.org/W4223488648","https://openalex.org/W2134969820","https://openalex.org/W2251605416","https://openalex.org/W2560439919","https://openalex.org/W4389340727","https://openalex.org/W3150465815","https://openalex.org/W1997222214","https://openalex.org/W2802581102"],"abstract_inverted_index":{"Abstract":[0],"In":[1],"this":[2],"study,":[3],"we":[4],"present":[5],"a":[6,20,41,95,101,109,116,151],"sophisticated":[7],"multi-label":[8,97,111],"deep":[9,133],"learning":[10,38],"framework":[11],"for":[12,47,75],"the":[13,54,83,137,143,162,176,182],"prediction":[14],"of":[15,57,184],"RNA-RBP":[16,153,167],"(RNA-binding":[17],"protein)":[18],"interactions,":[19],"critical":[21],"aspect":[22],"in":[23,31,161,179],"understanding":[24,183],"RNA":[25,58,80,139],"functionality":[26],"modulation":[27],"and":[28,43,59,89,127,131,188],"its":[29,64],"implications":[30],"disease":[32,189],"pathogenesis.":[33],"Our":[34],"approach":[35],"leverages":[36],"machine":[37],"to":[39,85,124,165,170,181],"develop":[40],"rapid":[42],"cost-efficient":[44],"predictive":[45],"model":[46,52,84],"these":[48],"interactions.":[49],"The":[50,67,91,105,156],"proposed":[51],"captures":[53],"complex":[55],"characteristics":[56],"recognizes":[60],"corresponding":[61],"RBPs":[62],"through":[63],"dual-module":[65],"architecture.":[66],"first":[68],"module":[69,93,107],"employs":[70],"convolutional":[71],"neural":[72],"networks":[73],"(CNNs)":[74],"intricate":[76],"feature":[77,102,117],"extraction":[78],"from":[79,136],"sequences,":[81],"enabling":[82],"discern":[86],"nuanced":[87],"patterns":[88],"attributes.":[90],"second":[92,106],"is":[94,108,122],"multi-view":[96,110],"classification":[98,112],"system":[99,113],"incorporating":[100],"attention":[103,118],"mechanism.":[104,119],"that":[114],"utilizes":[115],"This":[120,173],"mechanism":[121],"designed":[123],"intricately":[125],"analyze":[126],"distinguish":[128],"between":[129],"common":[130],"unique":[132],"features":[134],"derived":[135],"diverse":[138],"characteristics.":[140],"To":[141],"evaluate":[142],"model's":[144,163,177],"efficacy,":[145],"extensive":[146],"experiments":[147],"were":[148],"conducted":[149],"on":[150],"comprehensive":[152],"interaction":[154],"dataset.":[155],"results":[157],"emphasize":[158],"substantial":[159],"improvements":[160],"ability":[164],"predict":[166],"interactions":[168],"compared":[169],"existing":[171],"methodologies.":[172],"advancement":[174],"emphasizes":[175],"potential":[178],"contributing":[180],"RNA-mediated":[185],"biological":[186],"processes":[187],"etiology.":[190]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-18T07:56:08.524223","created_date":"2025-10-10T00:00:00"}