{"id":"https://openalex.org/W2952756500","doi":"https://doi.org/10.1186/s13326-019-0200-x","title":"Similarity corpus on microbial transcriptional regulation","display_name":"Similarity corpus on microbial transcriptional regulation","publication_year":2019,"publication_date":"2019-05-22","ids":{"openalex":"https://openalex.org/W2952756500","doi":"https://doi.org/10.1186/s13326-019-0200-x","mag":"2952756500","pmid":"https://pubmed.ncbi.nlm.nih.gov/31118102"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-019-0200-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0200-x","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0200-x","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0200-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074701315","display_name":"Oscar Lithgow-Serrano","orcid":"https://orcid.org/0000-0003-1995-1669"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Oscar Lithgow-Serrano","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico. olithgow@ccg.unam.mx","Instituto de Investigaciones en Matem\u00e1ticas Aplicadas y en Sistemas (IIMAS), Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM), Mexico City, M\u00e9xico. olithgow@ccg.unam.mx","Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","Instituto de Investigaciones en Matem\u00e1ticas Aplicadas y en Sistemas (IIMAS), Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM), Mexico City, M\u00e9xico"],"raw_orcid":"https://orcid.org/0000-0003-1995-1669","affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico. olithgow@ccg.unam.mx","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"Instituto de Investigaciones en Matem\u00e1ticas Aplicadas y en Sistemas (IIMAS), Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM), Mexico City, M\u00e9xico. olithgow@ccg.unam.mx","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"Instituto de Investigaciones en Matem\u00e1ticas Aplicadas y en Sistemas (IIMAS), Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM), Mexico City, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033098879","display_name":"Socorro Gama\u2010Castro","orcid":"https://orcid.org/0000-0001-7708-5143"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Socorro Gama-Castro","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089360167","display_name":"Cecilia Ishida-Guti\u00e9rrez","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Cecilia Ishida-Guti\u00e9rrez","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072041510","display_name":"Citlalli Mej\u00eda-Almonte","orcid":"https://orcid.org/0000-0002-0142-5591"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Citlalli Mej\u00eda-Almonte","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069620802","display_name":"V\u00edctor H. Tierrafr\u00eda","orcid":"https://orcid.org/0000-0003-3506-8657"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"V\u00edctor H. Tierrafr\u00eda","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072966609","display_name":"Sara Berenice Mart\u00ednez-Luna","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Sara Mart\u00ednez-Luna","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026565466","display_name":"Alberto Santos-Zavaleta","orcid":"https://orcid.org/0000-0002-2178-4006"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Alberto Santos-Zavaleta","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000182215","display_name":"David A. Vel\u00e1zquez-Ram\u00edrez","orcid":"https://orcid.org/0000-0002-7893-8467"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"David Vel\u00e1zquez-Ram\u00edrez","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079232768","display_name":"Julio Collado\u2010Vides","orcid":"https://orcid.org/0000-0001-8780-7664"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX","US"],"is_corresponding":false,"raw_author_name":"Julio Collado-Vides","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","Department of Biomedical Engineering, Boston University, Boston, Massachusetts, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Boston University, Boston, Massachusetts, USA","institution_ids":["https://openalex.org/I111088046"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5074701315"],"corresponding_institution_ids":["https://openalex.org/I8961855"],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":1340,"currency":"USD","value_usd":1340},"fwci":1.2639,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.84798302,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"10","issue":"1","first_page":"8","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9822999835014343,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8694897890090942},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.6531428694725037},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6456140279769897},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5952444076538086},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5772724151611328},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5561985373497009},{"id":"https://openalex.org/keywords/distributional-semantics","display_name":"Distributional semantics","score":0.5322703123092651},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4930219352245331},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.48591986298561096},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.466139018535614},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.45259854197502136},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.4486334025859833},{"id":"https://openalex.org/keywords/semeval","display_name":"SemEval","score":0.43218743801116943},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4275696873664856},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.41412025690078735},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.41073575615882874},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.2966685891151428}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8694897890090942},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.6531428694725037},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6456140279769897},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5952444076538086},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5772724151611328},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5561985373497009},{"id":"https://openalex.org/C2778828372","wikidata":"https://www.wikidata.org/wiki/Q5283209","display_name":"Distributional semantics","level":3,"score":0.5322703123092651},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4930219352245331},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.48591986298561096},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.466139018535614},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.45259854197502136},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.4486334025859833},{"id":"https://openalex.org/C44572571","wikidata":"https://www.wikidata.org/wiki/Q7448970","display_name":"SemEval","level":3,"score":0.43218743801116943},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4275696873664856},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.41412025690078735},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.41073575615882874},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.2966685891151428},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008829","descriptor_name":"Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008829","descriptor_name":"Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008829","descriptor_name":"Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008829","descriptor_name":"Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s13326-019-0200-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0200-x","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0200-x","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:31118102","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31118102","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6532127","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6532127","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:f133b23bf096497ca7efcbaa05005aec","is_oa":true,"landing_page_url":"https://doaj.org/article/f133b23bf096497ca7efcbaa05005aec","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 10, Iss 1, Pp 1-14 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13326-019-0200-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0200-x","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0200-x","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.8299999833106995,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G2154142971","display_name":null,"funder_award_id":"R01 GM110597","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G3757586627","display_name":"HIGH THROUGHPUT LITERATURE CURATION OF GENETIC REGULATION IN BACTERIAL MODELS","funder_award_id":"5r01gm110597-03","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4559350484","display_name":null,"funder_award_id":"576333","funder_id":"https://openalex.org/F4320321739","funder_display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda"}],"funders":[{"id":"https://openalex.org/F4320321739","display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda","ror":"https://ror.org/059ex5q34"},{"id":"https://openalex.org/F4320323401","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952756500.pdf","grobid_xml":"https://content.openalex.org/works/W2952756500.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W68566686","https://openalex.org/W73568656","https://openalex.org/W1664649366","https://openalex.org/W1921587136","https://openalex.org/W1966976587","https://openalex.org/W1975879668","https://openalex.org/W1996445490","https://openalex.org/W2008749430","https://openalex.org/W2016377072","https://openalex.org/W2020438140","https://openalex.org/W2024823706","https://openalex.org/W2031489346","https://openalex.org/W2037557484","https://openalex.org/W2049988375","https://openalex.org/W2053154970","https://openalex.org/W2080100102","https://openalex.org/W2094111439","https://openalex.org/W2104630935","https://openalex.org/W2124379907","https://openalex.org/W2124874361","https://openalex.org/W2136148671","https://openalex.org/W2152180407","https://openalex.org/W2155243985","https://openalex.org/W2164777277","https://openalex.org/W2232370058","https://openalex.org/W2256323257","https://openalex.org/W2325963232","https://openalex.org/W2479688594","https://openalex.org/W2515506406","https://openalex.org/W2585626124","https://openalex.org/W2595510158","https://openalex.org/W2735784619","https://openalex.org/W2736397884","https://openalex.org/W2900007277","https://openalex.org/W2946028604","https://openalex.org/W4243177274","https://openalex.org/W4285719527","https://openalex.org/W4294214983"],"related_works":["https://openalex.org/W2752041471","https://openalex.org/W78638240","https://openalex.org/W2252122760","https://openalex.org/W2105461184","https://openalex.org/W1840682977","https://openalex.org/W4299488910","https://openalex.org/W4386468556","https://openalex.org/W59191841","https://openalex.org/W2502814102","https://openalex.org/W3202920633"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1],"ability":[2],"to":[3,70,89,106,171],"express":[4],"the":[5,22,32,71,76,111,122,154,158,164,183,202,209,223],"same":[6],"meaning":[7],"in":[8,27,35,66,84,157,174,182,238],"different":[9],"ways":[10],"is":[11,21,208],"a":[12,59,91,150,193],"well-known":[13],"property":[14,20],"of":[15,24,53,73,75,115,121,142,152,204,214,216,226,231],"natural":[16,28,247],"language.":[17],"This":[18],"amazing":[19],"source":[23],"major":[25],"difficulties":[26],"language":[29,248],"processing.":[30,249],"Given":[31,63],"constant":[33],"increase":[34],"published":[36],"literature,":[37,78],"its":[38,236],"curation":[39,74,243],"and":[40,100,129,186],"information":[41],"extraction":[42],"would":[43],"strongly":[44],"benefit":[45,72],"from":[46,149],"efficient":[47],"automatic":[48],"processes,":[49],"for":[50,191,218],"which":[51,219],"corpora":[52],"sentences":[54,143,217],"evaluated":[55,97,145],"by":[56,98,146],"experts":[57,221],"are":[58],"valuable":[60],"resource.":[61],"RESULTS:":[62],"our":[64,107,172,205,239],"interest":[65],"applying":[67],"such":[68,192],"approaches":[69],"biomedical":[77],"specifically":[79,104],"that":[80,101],"about":[81],"gene":[82],"regulation":[83],"microbial":[85],"organisms,":[86],"we":[87,118],"decided":[88],"build":[90],"corpus":[92,194],"with":[93,179],"graded":[94],"textual":[95],"similarity":[96,160,211,225],"curators":[99],"was":[102,138,144,169],"designed":[103],"oriented":[105],"purposes.":[108],"Based":[109],"on":[110,246],"predefined":[112],"statistical":[113],"power":[114],"future":[116],"analyses,":[117],"defined":[119],"features":[120],"design,":[123],"including":[124],"sampling,":[125],"selection":[126],"criteria,":[127],"balance,":[128],"size,":[130],"among":[131],"others.":[132],"A":[133],"non-fully":[134],"crossed":[135],"study":[136],"design":[137],"applied.":[139],"Each":[140],"pair":[141],"3":[147],"annotators":[148],"total":[151],"7;":[153],"scale":[155],"used":[156],"semantic":[159,224],"assessment":[161],"task":[162],"within":[163],"Semantic":[165],"Evaluation":[166],"workshop":[167],"(SEMEVAL)":[168],"adapted":[170],"goals":[173],"four":[175],"successive":[176],"iterative":[177],"sessions":[178],"clear":[180],"improvements":[181],"agreed":[184],"guidelines":[185],"interrater":[187],"reliability":[188],"results.":[189],"Alternatives":[190],"evaluation":[195],"have":[196,234],"been":[197],"widely":[198],"discussed.":[199],"CONCLUSIONS:":[200],"To":[201],"best":[203],"knowledge,":[206],"this":[207,229],"first":[210],"corpus-a":[212],"dataset":[213],"pairs":[215],"human":[220],"rate":[222],"each":[227],"pair-in":[228],"domain":[230],"knowledge.":[232],"We":[233],"initiated":[235],"incorporation":[237],"research":[240],"towards":[241],"high-throughput":[242],"strategies":[244],"based":[245]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
