{"id":"https://openalex.org/W4406673042","doi":"https://doi.org/10.1186/s13321-024-00943-9","title":"StreamChol: a web-based application for predicting cholestasis","display_name":"StreamChol: a web-based application for predicting cholestasis","publication_year":2025,"publication_date":"2025-01-21","ids":{"openalex":"https://openalex.org/W4406673042","doi":"https://doi.org/10.1186/s13321-024-00943-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/39838478"},"language":"en","primary_location":{"id":"doi:10.1186/s13321-024-00943-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00943-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00943-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00943-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038909009","display_name":"Pablo Rodr\u00edguez-Belenguer","orcid":"https://orcid.org/0000-0001-5270-7452"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210156109","display_name":"Hospital del Mar Research Institute","ror":"https://ror.org/042nkmz09","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210156109","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Pablo Rodr\u00edguez-Belenguer","raw_affiliation_strings":["Research Programme On Biomedical Informatics (GRIB), Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Hospital del Mar Medical Research Institute, Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0001-5270-7452","affiliations":[{"raw_affiliation_string":"Research Programme On Biomedical Informatics (GRIB), Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Hospital del Mar Medical Research Institute, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I4210156109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063325355","display_name":"Emilio Soria\u2010Olivas","orcid":"https://orcid.org/0000-0002-9148-8405"},"institutions":[{"id":"https://openalex.org/I16097986","display_name":"Universitat de Val\u00e8ncia","ror":"https://ror.org/043nxc105","country_code":"ES","type":"education","lineage":["https://openalex.org/I16097986"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Emilio Soria-Olivas","raw_affiliation_strings":["IDAL, Intelligent Data Analysis Laboratory, ETSE, Universitat de Val\u00e8ncia, Valencia, Spain"],"raw_orcid":"https://orcid.org/0000-0002-9148-8405","affiliations":[{"raw_affiliation_string":"IDAL, Intelligent Data Analysis Laboratory, ETSE, Universitat de Val\u00e8ncia, Valencia, Spain","institution_ids":["https://openalex.org/I16097986"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076446637","display_name":"Manuel Pastor","orcid":"https://orcid.org/0000-0001-8850-1341"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]},{"id":"https://openalex.org/I4210156109","display_name":"Hospital del Mar Research Institute","ror":"https://ror.org/042nkmz09","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I4210156109","https://openalex.org/I4387153040"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Manuel Pastor","raw_affiliation_strings":["Research Programme On Biomedical Informatics (GRIB), Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Hospital del Mar Medical Research Institute, Barcelona, Spain. manuel.pastor@upf.edu","Research Programme On Biomedical Informatics (GRIB), Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Hospital del Mar Medical Research Institute, Barcelona, Spain"],"raw_orcid":"https://orcid.org/0000-0001-8850-1341","affiliations":[{"raw_affiliation_string":"Research Programme On Biomedical Informatics (GRIB), Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Hospital del Mar Medical Research Institute, Barcelona, Spain. manuel.pastor@upf.edu","institution_ids":["https://openalex.org/I170486558"]},{"raw_affiliation_string":"Research Programme On Biomedical Informatics (GRIB), Department of Medicine and Life Sciences, Universitat Pompeu Fabra, Hospital del Mar Medical Research Institute, Barcelona, Spain","institution_ids":["https://openalex.org/I170486558","https://openalex.org/I4210156109"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5038909009"],"corresponding_institution_ids":["https://openalex.org/I170486558","https://openalex.org/I4210156109"],"apc_list":{"value":1290,"currency":"GBP","value_usd":1582},"apc_paid":{"value":1290,"currency":"GBP","value_usd":1582},"fwci":2.6181,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.88383166,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"17","issue":"1","first_page":"9","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10570","display_name":"Drug Transport and Resistance Mechanisms","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7996312379837036},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7131333947181702},{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.5862765312194824},{"id":"https://openalex.org/keywords/usable","display_name":"USable","score":0.5336267352104187},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5261537432670593},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.514987051486969},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.46170738339424133},{"id":"https://openalex.org/keywords/application-programming-interface","display_name":"Application programming interface","score":0.42965465784072876},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18051469326019287},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.15393874049186707}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7996312379837036},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7131333947181702},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.5862765312194824},{"id":"https://openalex.org/C2780615836","wikidata":"https://www.wikidata.org/wiki/Q2471869","display_name":"USable","level":2,"score":0.5336267352104187},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5261537432670593},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.514987051486969},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.46170738339424133},{"id":"https://openalex.org/C99613125","wikidata":"https://www.wikidata.org/wiki/Q165194","display_name":"Application programming interface","level":2,"score":0.42965465784072876},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18051469326019287},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.15393874049186707}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s13321-024-00943-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00943-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00943-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},{"id":"pmid:39838478","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39838478","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of cheminformatics","raw_type":null},{"id":"pmh:oai:repositori-api.upf.edu:10230/69992","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/69992","pdf_url":"https://repositori.upf.edu/bitstreams/d53a0ba5-98e2-4208-ab89-848c1cc405f7/download","source":{"id":"https://openalex.org/S4306402615","display_name":"Repositori digital de la UPF (Universitat Pompeu Fabra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I170486558","host_organization_name":"Universitat Pompeu Fabra","host_organization_lineage":["https://openalex.org/I170486558"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:11752685","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11752685","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11752685/pdf/13321_2024_Article_943.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Cheminform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:0fb5df67dae548ffa43c5132b3afd0f1","is_oa":true,"landing_page_url":"https://doaj.org/article/0fb5df67dae548ffa43c5132b3afd0f1","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Cheminformatics, Vol 17, Iss 1, Pp 1-8 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13321-024-00943-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13321-024-00943-9","pdf_url":"https://jcheminf.biomedcentral.com/counter/pdf/10.1186/s13321-024-00943-9","source":{"id":"https://openalex.org/S180838163","display_name":"Journal of Cheminformatics","issn_l":"1758-2946","issn":["1758-2946"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Cheminformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2230998379","display_name":null,"funder_award_id":"964537","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G2714256167","display_name":null,"funder_award_id":"964537","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G2772014271","display_name":null,"funder_award_id":"RISK-HUNT3R","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7842005466","display_name":null,"funder_award_id":"Horizon 2020","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4406673042.pdf","grobid_xml":"https://content.openalex.org/works/W4406673042.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W2011301426","https://openalex.org/W2041473955","https://openalex.org/W2295598076","https://openalex.org/W2342249984","https://openalex.org/W2734700870","https://openalex.org/W2911964244","https://openalex.org/W3014780529","https://openalex.org/W3102476541","https://openalex.org/W3118021898","https://openalex.org/W4212774754","https://openalex.org/W4237346669","https://openalex.org/W4281741073","https://openalex.org/W4293174670","https://openalex.org/W4296826847","https://openalex.org/W4386399411","https://openalex.org/W4387670873","https://openalex.org/W4391361819","https://openalex.org/W7073853143"],"related_works":["https://openalex.org/W2982321410","https://openalex.org/W2392004567","https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W2940029036","https://openalex.org/W4388292429","https://openalex.org/W106542691","https://openalex.org/W1699080303","https://openalex.org/W2756595502","https://openalex.org/W4297799326"],"abstract_inverted_index":{"This":[0,48,125],"article":[1],"introduces":[2],"StreamChol,":[3,96],"a":[4,17,22,31,34,38,100,128,136],"software":[5,27],"for":[6,59,103,120,132,139],"developing":[7],"and":[8,114,135,152],"applying":[9],"mechanistic":[10],"models":[11],"to":[12,92],"predict":[13],"cholestasis.":[14],"StreamChol":[15,80],"is":[16,81],"Streamlit":[18],"application,":[19],"usable":[20],"as":[21,83],"desktop":[23],"application":[24],"or":[25],"web-accessible":[26],"when":[28],"installed":[29],"on":[30],"server":[32],"using":[33],"docker":[35],"container.StreamChol":[36],"allows":[37],"seamless":[39],"integration":[40,49],"of":[41,147],"pharmacokinetic":[42],"analyses":[43],"with":[44],"Machine":[45],"Learning":[46],"models.":[47],"not":[50],"only":[51],"enables":[52],"cholestasis":[53,133],"prediction":[54,134],"but":[55],"also":[56,70],"opens":[57],"avenues":[58],"predicting":[60],"other":[61],"toxicological":[62],"endpoints":[63],"requiring":[64],"similar":[65],"integrations.":[66],"StreamChol's":[67],"Docker":[68],"containerization":[69],"streamlines":[71],"deployment":[72],"across":[73],"diverse":[74],"environments,":[75],"addressing":[76],"potential":[77],"compatibility":[78],"issues.":[79],"distributed":[82],"open-source":[84],"under":[85],"GNU":[86],"GPL":[87],"v3,":[88],"reflecting":[89],"our":[90],"commitment":[91],"open":[93],"science.":[94],"Through":[95],"researchers":[97],"are":[98],"offered":[99],"potent":[101],"tool":[102,131],"predictive":[104],"modelling":[105],"in":[106],"toxicology,":[107],"harnessing":[108],"its":[109],"strengths":[110],"within":[111],"an":[112],"intuitive":[113],"user-friendly":[115,129],"interface,":[116],"without":[117],"the":[118,145],"need":[119],"any":[121],"programming":[122,149],"knowledge.Scientific":[123],"contribution":[124],"work":[126],"offers":[127],"web-based":[130],"complete":[137],"workflow":[138],"creating":[140],"web":[141],"platforms":[142],"that":[143],"require":[144],"combination":[146],"both":[148],"languages,":[150],"R":[151],"Python.":[153]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-05-02T08:42:23.175194","created_date":"2025-10-10T00:00:00"}
