{"id":"https://openalex.org/W4404595613","doi":"https://doi.org/10.1186/s12859-024-05981-6","title":"ClassifieR 2.0: expanding interactive gene expression-based stratification to prostate and high-grade serous ovarian cancer","display_name":"ClassifieR 2.0: expanding interactive gene expression-based stratification to prostate and high-grade serous ovarian cancer","publication_year":2024,"publication_date":"2024-11-21","ids":{"openalex":"https://openalex.org/W4404595613","doi":"https://doi.org/10.1186/s12859-024-05981-6","pmid":"https://pubmed.ncbi.nlm.nih.gov/39574035"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-024-05981-6","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-024-05981-6","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05981-6.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05981-6.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006631476","display_name":"Aideen McCabe","orcid":"https://orcid.org/0000-0002-1218-3671"},"institutions":[{"id":"https://openalex.org/I168346926","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38","country_code":"IE","type":"nonprofit","lineage":["https://openalex.org/I168346926"]},{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Aideen McCabe","raw_affiliation_strings":["School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland. 120224381@umail.ucc.ie","The SFI Centre for Research Training in Genomics Data Science, Galway, Ireland. 120224381@umail.ucc.ie","School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland"],"affiliations":[{"raw_affiliation_string":"School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland. 120224381@umail.ucc.ie","institution_ids":["https://openalex.org/I27577105"]},{"raw_affiliation_string":"The SFI Centre for Research Training in Genomics Data Science, Galway, Ireland. 120224381@umail.ucc.ie","institution_ids":["https://openalex.org/I168346926"]},{"raw_affiliation_string":"School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020254608","display_name":"Gerard P. Quinn","orcid":"https://orcid.org/0000-0001-8784-0157"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Gerard P. Quinn","raw_affiliation_strings":["BlokBio, Ormeau Labs, Belfast, Northern Ireland, UK","The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, Northern Ireland, UK"],"affiliations":[{"raw_affiliation_string":"BlokBio, Ormeau Labs, Belfast, Northern Ireland, UK","institution_ids":[]},{"raw_affiliation_string":"The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, Northern Ireland, UK","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114377062","display_name":"Suneil Jain","orcid":"https://orcid.org/0000-0001-7429-4791"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]},{"id":"https://openalex.org/I1289110261","display_name":"Belfast Health and Social Care Trust","ror":"https://ror.org/02tdmfk69","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1289110261"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Suneil Jain","raw_affiliation_strings":["Department of Clinical Oncology, Northern Ireland Cancer Centre, Belfast Health and Social Care Trust, Belfast, UK","The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, Northern Ireland, UK"],"affiliations":[{"raw_affiliation_string":"Department of Clinical Oncology, Northern Ireland Cancer Centre, Belfast Health and Social Care Trust, Belfast, UK","institution_ids":["https://openalex.org/I1289110261"]},{"raw_affiliation_string":"The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, Northern Ireland, UK","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114742222","display_name":"Miche\u00e1l \u00d3. D\u00e1laigh","orcid":null},"institutions":[{"id":"https://openalex.org/I188760350","display_name":"Ollscoil na Gaillimhe \u2013 University of Galway","ror":"https://ror.org/03bea9k73","country_code":"IE","type":"education","lineage":["https://openalex.org/I188760350"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Miche\u00e1l \u00d3 D\u00e1laigh","raw_affiliation_strings":["School of Biological and Chemical Sciences, University of Galway, Galway, Ireland","School of Mathematical and Statistical Sciences, University of Galway, Galway, Ireland","The SFI Centre for Research Training in Genomics Data Science, Galway, Ireland"],"affiliations":[{"raw_affiliation_string":"School of Biological and Chemical Sciences, University of Galway, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]},{"raw_affiliation_string":"School of Mathematical and Statistical Sciences, University of Galway, Galway, Ireland","institution_ids":["https://openalex.org/I188760350"]},{"raw_affiliation_string":"The SFI Centre for Research Training in Genomics Data Science, Galway, Ireland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047760654","display_name":"Kellie Dean","orcid":"https://orcid.org/0000-0002-3213-8181"},"institutions":[{"id":"https://openalex.org/I27577105","display_name":"University College Cork","ror":"https://ror.org/03265fv13","country_code":"IE","type":"education","lineage":["https://openalex.org/I27577105"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Kellie Dean","raw_affiliation_strings":["School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland"],"affiliations":[{"raw_affiliation_string":"School of Biochemistry and Cell Biology, University College Cork, Cork, Ireland","institution_ids":["https://openalex.org/I27577105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046193886","display_name":"Ross G. Murphy","orcid":"https://orcid.org/0000-0001-8583-8635"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]},{"id":"https://openalex.org/I138801177","display_name":"University of Ulster","ror":"https://ror.org/01yp9g959","country_code":"GB","type":"education","lineage":["https://openalex.org/I138801177"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ross G. Murphy","raw_affiliation_strings":["The Centre for Genomic Medicine, Ulster University, Coleraine, Northern Ireland, UK","The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, Northern Ireland, UK"],"affiliations":[{"raw_affiliation_string":"The Centre for Genomic Medicine, Ulster University, Coleraine, Northern Ireland, UK","institution_ids":["https://openalex.org/I138801177"]},{"raw_affiliation_string":"The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, Northern Ireland, UK","institution_ids":["https://openalex.org/I126231945"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067775652","display_name":"Simon S. McDade","orcid":"https://orcid.org/0000-0002-3024-4773"},"institutions":[{"id":"https://openalex.org/I126231945","display_name":"Queen's University Belfast","ror":"https://ror.org/00hswnk62","country_code":"GB","type":"education","lineage":["https://openalex.org/I126231945"]},{"id":"https://openalex.org/I4210160589","display_name":"Department for Infrastructure","ror":"https://ror.org/05p3n6281","country_code":"GB","type":"government","lineage":["https://openalex.org/I4210160589"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon S. McDade","raw_affiliation_strings":["BlokBio, Ormeau Labs, Belfast, Northern Ireland, UK. s.mcdade@qub.ac.uk","The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, Northern Ireland, UK. s.mcdade@qub.ac.uk","The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, Northern Ireland, UK"],"affiliations":[{"raw_affiliation_string":"BlokBio, Ormeau Labs, Belfast, Northern Ireland, UK. s.mcdade@qub.ac.uk","institution_ids":["https://openalex.org/I4210160589"]},{"raw_affiliation_string":"The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, Northern Ireland, UK. s.mcdade@qub.ac.uk","institution_ids":["https://openalex.org/I126231945"]},{"raw_affiliation_string":"The Patrick G Johnston Centre for Cancer Research, Queen's University Belfast, Belfast, Northern Ireland, UK","institution_ids":["https://openalex.org/I126231945"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5006631476"],"corresponding_institution_ids":["https://openalex.org/I168346926","https://openalex.org/I27577105"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.2955,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.63162353,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"25","issue":"1","first_page":"362","last_page":"362"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12465","display_name":"Cancer, Lipids, and Metabolism","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12465","display_name":"Cancer, Lipids, and Metabolism","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.8734661340713501},{"id":"https://openalex.org/keywords/prostate-cancer","display_name":"Prostate cancer","score":0.6763078570365906},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.5839143991470337},{"id":"https://openalex.org/keywords/serous-ovarian-cancer","display_name":"Serous ovarian cancer","score":0.5747509598731995},{"id":"https://openalex.org/keywords/serous-fluid","display_name":"Serous fluid","score":0.4442096948623657},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4394656717777252},{"id":"https://openalex.org/keywords/ovarian-cancer","display_name":"Ovarian cancer","score":0.4306963086128235},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42091432213783264},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3836219310760498},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.330782949924469},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.244104266166687},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21053335070610046},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.20576834678649902},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.17415320873260498},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08460161089897156}],"concepts":[{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.8734661340713501},{"id":"https://openalex.org/C2780192828","wikidata":"https://www.wikidata.org/wiki/Q181257","display_name":"Prostate cancer","level":3,"score":0.6763078570365906},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.5839143991470337},{"id":"https://openalex.org/C2993684365","wikidata":"https://www.wikidata.org/wiki/Q172341","display_name":"Serous ovarian cancer","level":4,"score":0.5747509598731995},{"id":"https://openalex.org/C150173356","wikidata":"https://www.wikidata.org/wiki/Q6144101","display_name":"Serous fluid","level":2,"score":0.4442096948623657},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4394656717777252},{"id":"https://openalex.org/C2780427987","wikidata":"https://www.wikidata.org/wiki/Q172341","display_name":"Ovarian cancer","level":3,"score":0.4306963086128235},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42091432213783264},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3836219310760498},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.330782949924469},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.244104266166687},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21053335070610046},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.20576834678649902},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.17415320873260498},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08460161089897156},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008297","descriptor_name":"Male","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010051","descriptor_name":"Ovarian Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D010051","descriptor_name":"Ovarian Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D010051","descriptor_name":"Ovarian Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D010051","descriptor_name":"Ovarian Neoplasms","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D010051","descriptor_name":"Ovarian Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010051","descriptor_name":"Ovarian Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010051","descriptor_name":"Ovarian Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010051","descriptor_name":"Ovarian Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D011471","descriptor_name":"Prostatic Neoplasms","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015972","descriptor_name":"Gene Expression Regulation, Neoplastic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D020869","descriptor_name":"Gene Expression Profiling","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-024-05981-6","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-024-05981-6","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05981-6.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:39574035","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39574035","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:publications/66cc9605-9f79-4ddc-a364-aa0dadc59669","is_oa":true,"landing_page_url":"https://pure.ulster.ac.uk/en/publications/66cc9605-9f79-4ddc-a364-aa0dadc59669","pdf_url":null,"source":{"id":"https://openalex.org/S4306402454","display_name":"Ulster University Research Portal (Ulster University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138801177","host_organization_name":"University of Ulster","host_organization_lineage":["https://openalex.org/I138801177"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"McCabe, A, Quinn, G P, Jain, S, \u00d3 D\u00e1laigh, M, Dean, K, Murphy, R G & McDade, S S 2024, 'ClassifieR 2.0: expanding interactive gene expression-based stratification to prostate and high-grade serous ovarian cancer', BMC Bioinformatics, vol. 25, no. 1, 362 (2024) , pp. 1-13. https://doi.org/10.1186/s12859-024-05981-6","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:11580654","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11580654","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11580654/pdf/12859_2024_Article_5981.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:6bf7d15909354ee88385117df5f155c1","is_oa":true,"landing_page_url":"https://doaj.org/article/6bf7d15909354ee88385117df5f155c1","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 25, Iss 1, Pp 1-13 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s12859-024-05981-6","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s12859-024-05981-6","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-024-05981-6.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G4125273568","display_name":null,"funder_award_id":"C11884/A24367","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G582926436","display_name":null,"funder_award_id":"MC_PC_19050","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G6885446146","display_name":null,"funder_award_id":"18/CRT/6214","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"}],"funders":[{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"},{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4404595613.pdf","grobid_xml":"https://content.openalex.org/works/W4404595613.grobid-xml"},"referenced_works_count":37,"referenced_works":["https://openalex.org/W1934094702","https://openalex.org/W1998343146","https://openalex.org/W2000056288","https://openalex.org/W2031674672","https://openalex.org/W2043672855","https://openalex.org/W2095927032","https://openalex.org/W2123696077","https://openalex.org/W2131593373","https://openalex.org/W2133464976","https://openalex.org/W2138644182","https://openalex.org/W2141414987","https://openalex.org/W2157630129","https://openalex.org/W2160953558","https://openalex.org/W2172358623","https://openalex.org/W2179438025","https://openalex.org/W2214074259","https://openalex.org/W2533508881","https://openalex.org/W2605820045","https://openalex.org/W2617865703","https://openalex.org/W2761180418","https://openalex.org/W2806267204","https://openalex.org/W2810239069","https://openalex.org/W2913268845","https://openalex.org/W2952001873","https://openalex.org/W2964315448","https://openalex.org/W2995773591","https://openalex.org/W3036427315","https://openalex.org/W3036895040","https://openalex.org/W3164303435","https://openalex.org/W3178934170","https://openalex.org/W4220766413","https://openalex.org/W4280566607","https://openalex.org/W4281960705","https://openalex.org/W4313680974","https://openalex.org/W4379206960","https://openalex.org/W4389639397","https://openalex.org/W4398182689"],"related_works":["https://openalex.org/W2329167577","https://openalex.org/W1991458056","https://openalex.org/W4230565969","https://openalex.org/W2375683817","https://openalex.org/W4400618263","https://openalex.org/W2356273915","https://openalex.org/W2390302961","https://openalex.org/W2122634638","https://openalex.org/W4246784297","https://openalex.org/W3096923108"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-03-12T06:13:28.667946","created_date":"2025-10-10T00:00:00"}
