{"id":"https://openalex.org/W4309509159","doi":"https://doi.org/10.1186/s12859-022-05022-0","title":"Semantic interoperability: ontological unpacking of a viral conceptual model","display_name":"Semantic interoperability: ontological unpacking of a viral conceptual model","publication_year":2022,"publication_date":"2022-11-17","ids":{"openalex":"https://openalex.org/W4309509159","doi":"https://doi.org/10.1186/s12859-022-05022-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/36396980"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-022-05022-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-05022-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-05022-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-05022-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078800193","display_name":"Anna Bernasconi","orcid":"https://orcid.org/0000-0001-8016-5750"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]},{"id":"https://openalex.org/I93860229","display_name":"Politecnico di Milano","ror":"https://ror.org/01nffqt88","country_code":"IT","type":"education","lineage":["https://openalex.org/I93860229"]}],"countries":["ES","IT"],"is_corresponding":true,"raw_author_name":"Anna Bernasconi","raw_affiliation_strings":["Department of Electronics, Information and Bioengineering, Politecnico di Milano, Milan, Italy. anna.bernasconi@polimi.it","PROS Research Center, VRAIN Research Institute, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain. anna.bernasconi@polimi.it","Department of Electronics, Information and Bioengineering, Politecnico di Milano, Milan, Italy"],"raw_orcid":"https://orcid.org/0000-0001-8016-5750","affiliations":[{"raw_affiliation_string":"Department of Electronics, Information and Bioengineering, Politecnico di Milano, Milan, Italy. anna.bernasconi@polimi.it","institution_ids":["https://openalex.org/I93860229"]},{"raw_affiliation_string":"PROS Research Center, VRAIN Research Institute, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain. anna.bernasconi@polimi.it","institution_ids":["https://openalex.org/I60053951"]},{"raw_affiliation_string":"Department of Electronics, Information and Bioengineering, Politecnico di Milano, Milan, Italy","institution_ids":["https://openalex.org/I93860229"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065297243","display_name":"Giancarlo Guizzardi","orcid":"https://orcid.org/0000-0002-3452-553X"},"institutions":[{"id":"https://openalex.org/I171543936","display_name":"Free University of Bozen-Bolzano","ror":"https://ror.org/012ajp527","country_code":"IT","type":"education","lineage":["https://openalex.org/I171543936"]},{"id":"https://openalex.org/I94624287","display_name":"University of Twente","ror":"https://ror.org/006hf6230","country_code":"NL","type":"education","lineage":["https://openalex.org/I94624287"]}],"countries":["IT","NL"],"is_corresponding":false,"raw_author_name":"Giancarlo Guizzardi","raw_affiliation_strings":["Conceptual and Cognitive Modeling Research Group, Free University of Bozen-Bolzano, Bolzano, Italy","Services and Cybersecurity Group, University of Twente, Enschede, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Conceptual and Cognitive Modeling Research Group, Free University of Bozen-Bolzano, Bolzano, Italy","institution_ids":["https://openalex.org/I171543936"]},{"raw_affiliation_string":"Services and Cybersecurity Group, University of Twente, Enschede, The Netherlands","institution_ids":["https://openalex.org/I94624287"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028443098","display_name":"\u00d3scar Pastor","orcid":"https://orcid.org/0000-0002-1320-8471"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Oscar Pastor","raw_affiliation_strings":["PROS Research Center, VRAIN Research Institute, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"PROS Research Center, VRAIN Research Institute, Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002282690","display_name":"Veda C. Storey","orcid":"https://orcid.org/0000-0002-8735-1553"},"institutions":[{"id":"https://openalex.org/I181565077","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18","country_code":"US","type":"education","lineage":["https://openalex.org/I181565077"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Veda C. Storey","raw_affiliation_strings":["J. Mack Robinson College of Business, Georgia State University, Atlanta, Georgia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"J. Mack Robinson College of Business, Georgia State University, Atlanta, Georgia, USA","institution_ids":["https://openalex.org/I181565077"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5078800193"],"corresponding_institution_ids":["https://openalex.org/I60053951","https://openalex.org/I93860229"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.3867,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.81050995,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"23","issue":"S11","first_page":"491","last_page":"491"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.47029998898506165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.47029998898506165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.09740000218153,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.038100000470876694,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7010063529014587},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6478362679481506},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5744994282722473},{"id":"https://openalex.org/keywords/semantic-interoperability","display_name":"Semantic interoperability","score":0.5650383234024048},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5236727595329285},{"id":"https://openalex.org/keywords/unpacking","display_name":"Unpacking","score":0.5108391642570496},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.4887838065624237},{"id":"https://openalex.org/keywords/conceptual-model","display_name":"Conceptual model","score":0.4825241267681122},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.42280369997024536},{"id":"https://openalex.org/keywords/knowledge-management","display_name":"Knowledge management","score":0.32760465145111084},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2445245385169983},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2109569013118744},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.13422361016273499},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.10837307572364807}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7010063529014587},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6478362679481506},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5744994282722473},{"id":"https://openalex.org/C192800085","wikidata":"https://www.wikidata.org/wiki/Q5258530","display_name":"Semantic interoperability","level":3,"score":0.5650383234024048},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5236727595329285},{"id":"https://openalex.org/C2777256151","wikidata":"https://www.wikidata.org/wiki/Q7897273","display_name":"Unpacking","level":2,"score":0.5108391642570496},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.4887838065624237},{"id":"https://openalex.org/C13606891","wikidata":"https://www.wikidata.org/wiki/Q2623243","display_name":"Conceptual model","level":2,"score":0.4825241267681122},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.42280369997024536},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.32760465145111084},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2445245385169983},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2109569013118744},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.13422361016273499},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.10837307572364807},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/s12859-022-05022-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-05022-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-05022-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:36396980","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36396980","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:ris.utwente.nl:openaire_cris_publications/c8d578f6-00e0-4172-a4e1-fc7e5754d113","is_oa":true,"landing_page_url":"https://research.utwente.nl/en/publications/c8d578f6-00e0-4172-a4e1-fc7e5754d113","pdf_url":"https://ris.utwente.nl/ws/files/299618459/s12859_022_05022_0.pdf","source":{"id":"https://openalex.org/S4406922991","display_name":"University of Twente Research Information","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Benasconi, A, Guizzardi, G, Pastor, O & Storey, V C 2022, 'Semantic interoperability : Ontological unpacking of a viral conceptual model', BMC bioinformatics, vol. 23, no. Suppl. 11, 491. https://doi.org/10.1186/s12859-022-05022-0","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:5234b25b416a4eb6abb942c61935d434","is_oa":true,"landing_page_url":"https://doaj.org/article/5234b25b416a4eb6abb942c61935d434","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 23, Iss S11, Pp 1-22 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9672571","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9672571","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:re.public.polimi.it:11311/1224028","is_oa":true,"landing_page_url":"https://hdl.handle.net/11311/1224028","pdf_url":null,"source":{"id":"https://openalex.org/S4306400312","display_name":"Virtual Community of Pathological Anatomy (University of Castilla La Mancha)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79189158","host_organization_name":"University of Castilla-La Mancha","host_organization_lineage":["https://openalex.org/I79189158"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s12859-022-05022-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-022-05022-0","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-022-05022-0","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2279835902","display_name":null,"funder_award_id":"INNEST/2021/57","funder_id":"https://openalex.org/F4320321864","funder_display_name":"Generalitat Valenciana"},{"id":"https://openalex.org/G4998220388","display_name":null,"funder_award_id":"CIPROM/2021/023","funder_id":"https://openalex.org/F4320321864","funder_display_name":"Generalitat Valenciana"},{"id":"https://openalex.org/G8154664624","display_name":null,"funder_award_id":"15010001-10","funder_id":"https://openalex.org/F4320321015","funder_display_name":"University of Twente"}],"funders":[{"id":"https://openalex.org/F4320310607","display_name":"Georgia State University","ror":"https://ror.org/03qt6ba18"},{"id":"https://openalex.org/F4320321015","display_name":"University of Twente","ror":"https://ror.org/006hf6230"},{"id":"https://openalex.org/F4320321864","display_name":"Generalitat Valenciana","ror":"https://ror.org/0097mvx21"},{"id":"https://openalex.org/F4320325400","display_name":"Libera Universit\u00e0 di Bolzano","ror":"https://ror.org/012ajp527"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4309509159.pdf","grobid_xml":"https://content.openalex.org/works/W4309509159.grobid-xml"},"referenced_works_count":83,"referenced_works":["https://openalex.org/W5067071","https://openalex.org/W42907978","https://openalex.org/W225255289","https://openalex.org/W1606398357","https://openalex.org/W1802346448","https://openalex.org/W1989277387","https://openalex.org/W1992673035","https://openalex.org/W2005129098","https://openalex.org/W2013623410","https://openalex.org/W2033233381","https://openalex.org/W2103017472","https://openalex.org/W2106578986","https://openalex.org/W2123171788","https://openalex.org/W2123694583","https://openalex.org/W2125615283","https://openalex.org/W2147018385","https://openalex.org/W2148984584","https://openalex.org/W2159482845","https://openalex.org/W2252710622","https://openalex.org/W2254472215","https://openalex.org/W2302501749","https://openalex.org/W2346673125","https://openalex.org/W2474051009","https://openalex.org/W2528915120","https://openalex.org/W2596063216","https://openalex.org/W2605343262","https://openalex.org/W2765397040","https://openalex.org/W2945526390","https://openalex.org/W2981790391","https://openalex.org/W2982638054","https://openalex.org/W2986620768","https://openalex.org/W2988998130","https://openalex.org/W3003217347","https://openalex.org/W3004280078","https://openalex.org/W3007156983","https://openalex.org/W3010256223","https://openalex.org/W3018965582","https://openalex.org/W3033301286","https://openalex.org/W3035434194","https://openalex.org/W3039901154","https://openalex.org/W3041275674","https://openalex.org/W3049452588","https://openalex.org/W3088646411","https://openalex.org/W3091816512","https://openalex.org/W3096895768","https://openalex.org/W3111998662","https://openalex.org/W3112376646","https://openalex.org/W3112600195","https://openalex.org/W3116596851","https://openalex.org/W3116954766","https://openalex.org/W3117220677","https://openalex.org/W3124772303","https://openalex.org/W3138966307","https://openalex.org/W3141128290","https://openalex.org/W3156220950","https://openalex.org/W3161754048","https://openalex.org/W3166766123","https://openalex.org/W3167729433","https://openalex.org/W3170771812","https://openalex.org/W3175812678","https://openalex.org/W3176589197","https://openalex.org/W3185291249","https://openalex.org/W3197824792","https://openalex.org/W3202281227","https://openalex.org/W3203727037","https://openalex.org/W3204102762","https://openalex.org/W3204762995","https://openalex.org/W3205620409","https://openalex.org/W3206700383","https://openalex.org/W3209071171","https://openalex.org/W3209343845","https://openalex.org/W3211389268","https://openalex.org/W3212233507","https://openalex.org/W4200329746","https://openalex.org/W4200557031","https://openalex.org/W4210555484","https://openalex.org/W4233698560","https://openalex.org/W4236459334","https://openalex.org/W4281749551","https://openalex.org/W4285264268","https://openalex.org/W4294216483","https://openalex.org/W4387099623","https://openalex.org/W6713485353"],"related_works":["https://openalex.org/W4386953431","https://openalex.org/W2355850745","https://openalex.org/W2109385585","https://openalex.org/W2157800466","https://openalex.org/W2388051831","https://openalex.org/W4292980915","https://openalex.org/W2531681040","https://openalex.org/W2908350895","https://openalex.org/W3209454962","https://openalex.org/W2885367039"],"abstract_inverted_index":{"BACKGROUND:":[0],"Genomics":[1],"and":[2,22,65,100,126,224,264],"virology":[3],"are":[4,58],"unquestionably":[5],"important,":[6],"but":[7,210,283],"complex,":[8],"domains":[9,27],"being":[10],"investigated":[11],"by":[12,115,133,183,247],"a":[13,62,71,160,177,194,198],"large":[14],"number":[15],"of":[16,30,41,67,91,130,141,162,170,187,229,243,261,274],"scientists.":[17],"The":[18,253],"need":[19,135],"to":[20,37,94,105,118,136,238,294],"facilitate":[21],"support":[23,95,106],"work":[24],"within":[25,258],"these":[26],"requires":[28],"sharing":[29],"databases,":[31],"although":[32],"it":[33],"is":[34,48,113,174,181,245],"often":[35],"difficult":[36],"do":[38],"so":[39,73],"because":[40],"the":[42,51,68,75,89,119,128,134,138,142,152,156,167,171,185,188,207,215,227,230,241,248,259,269,289],"different":[43],"ways":[44],"in":[45,70,176,250,279],"which":[46,244],"data":[47,76,216,263],"represented":[49,175],"across":[50],"databases.":[52],"To":[53],"foster":[54],"semantic":[55,96,149,239],"interoperability,":[56,240],"models":[57,93,276],"needed":[59,291],"that":[60,74,124,165,173,218],"provide":[61],"deep":[63],"understanding":[64],"interpretation":[66],"concepts":[69],"domain,":[72],"can":[77],"be":[78],"consistently":[79],"interpreted":[80],"among":[81,98,214],"researchers.":[82],"RESULTS:":[83],"In":[84],"this":[85],"research,":[86],"we":[87,154,196],"propose":[88,197,223],"use":[90],"conceptual":[92,178,191,256],"interoperability":[97,213,290],"databases":[99],"assess":[101],"their":[102,107,296],"ontological":[103,163,168,285],"clarity":[104,150],"effective":[108],"use.":[109],"This":[110,180],"modeling":[111,192],"effort":[112],"illustrated":[114],"its":[116],"application":[117],"Viral":[120,231],"Conceptual":[121,232],"Model":[122,233],"(VCM)":[123],"captures":[125],"represents":[127],"sequencing":[129],"viruses,":[131],"inspired":[132],"understand":[137],"genomic":[139],"aspects":[140],"virus":[143],"responsible":[144],"for":[145,271,292],"COVID-19.":[146],"For":[147],"achieving":[148],"on":[151,206],"VCM,":[153,209],"leverage":[155],"\"ontological":[157],"unpacking\"":[158],"method,":[159],"process":[161],"analysis":[164],"reveals":[166],"foundation":[169],"information":[172],"model.":[179],"accomplished":[182],"applying":[184],"stereotypes":[186],"OntoUML":[189],"ontology-driven":[190],"language.As":[193],"result,":[195],"new":[199],"OntoVCM,":[200],"an":[201],"ontologically":[202],"grounded":[203],"model,":[204],"based":[205],"initial":[208],"with":[211],"guaranteed":[212],"sources":[217],"employ":[219],"it.":[220],"CONCLUSIONS:":[221],"We":[222],"illustrate":[225],"how":[226],"unpacking":[228],"resolves":[234],"several":[235],"issues":[236],"related":[237],"importance":[242],"recognized":[246],"\"I\"":[249],"FAIR":[251],"principles.":[252],"research":[254],"addresses":[255],"uncertainty":[257],"domain":[260],"SARS-CoV-2":[262],"knowledge.The":[265],"method":[266],"employed":[267],"provides":[268],"basis":[270],"further":[272],"analyses":[273],"complex":[275],"currently":[277],"used":[278],"life":[280],"science":[281],"applications,":[282],"lacking":[284],"grounding,":[286],"subsequently":[287],"hindering":[288],"scientists":[293],"progress":[295],"research.":[297]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":7}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
