{"id":"https://openalex.org/W3164934299","doi":"https://doi.org/10.1186/s12859-021-04211-7","title":"RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis","display_name":"RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis","publication_year":2021,"publication_date":"2021-06-03","ids":{"openalex":"https://openalex.org/W3164934299","doi":"https://doi.org/10.1186/s12859-021-04211-7","mag":"3164934299","pmid":"https://pubmed.ncbi.nlm.nih.gov/34082707"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-021-04211-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04211-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04211-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04211-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056591256","display_name":"Alessandro La Ferlita","orcid":"https://orcid.org/0000-0002-3680-3177"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]},{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["IT","US"],"is_corresponding":true,"raw_author_name":"Alessandro La Ferlita","raw_affiliation_strings":["Department of Cancer Biology and Genetics, The Ohio State University, Columbus, OH, USA","Department of Clinical and Experimental Medicine, Bioinformatics Unit, University of Catania, Catania, Italy","Department of Physics and Astronomy, University of Catania, Catania, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Cancer Biology and Genetics, The Ohio State University, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Department of Clinical and Experimental Medicine, Bioinformatics Unit, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]},{"raw_affiliation_string":"Department of Physics and Astronomy, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023263135","display_name":"Salvatore Alaimo","orcid":"https://orcid.org/0000-0003-4825-7617"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Salvatore Alaimo","raw_affiliation_strings":["Department of Clinical and Experimental Medicine, Bioinformatics Unit, University of Catania, Catania, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Clinical and Experimental Medicine, Bioinformatics Unit, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078707861","display_name":"Sebastiano Di Bella","orcid":"https://orcid.org/0000-0001-7161-303X"},"institutions":[{"id":"https://openalex.org/I4210127540","display_name":"Nerviano Medical Sciences","ror":"https://ror.org/038mzt421","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210127540"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Sebastiano Di Bella","raw_affiliation_strings":["Nerviano Medical Sciences, Nerviano, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Nerviano Medical Sciences, Nerviano, Milan, Italy","institution_ids":["https://openalex.org/I4210127540"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015403411","display_name":"Emanuele Martorana","orcid":"https://orcid.org/0000-0001-9760-887X"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]},{"id":"https://openalex.org/I4210160210","display_name":"Azienda Ospedaliero-Universitaria Policlinico - Vittorio Emanuele","ror":"https://ror.org/051tt6c85","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210160210"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Emanuele Martorana","raw_affiliation_strings":["Regional Referral Centre for Rare Lung Diseases, A. O. U. \"Policlinico-Vittorio Emanuele\", Department of Clinical and Experimental Medicine, University of Catania, Catania, Italy"],"affiliations":[{"raw_affiliation_string":"Regional Referral Centre for Rare Lung Diseases, A. O. U. \"Policlinico-Vittorio Emanuele\", Department of Clinical and Experimental Medicine, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I4210160210","https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039568881","display_name":"George Laliotis","orcid":"https://orcid.org/0000-0001-9205-8258"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Georgios I. Laliotis","raw_affiliation_strings":["Department of Cancer Biology and Genetics, The Ohio State University, Columbus, OH, USA"],"affiliations":[{"raw_affiliation_string":"Department of Cancer Biology and Genetics, The Ohio State University, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066518317","display_name":"Francesco Bertoni","orcid":"https://orcid.org/0000-0001-5637-8983"},"institutions":[{"id":"https://openalex.org/I4210101830","display_name":"Institute of Oncology Research","ror":"https://ror.org/01dpyn972","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210101830","https://openalex.org/I57201433"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Francesco Bertoni","raw_affiliation_strings":["Institute of Oncology Research, Bellinzona, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Oncology Research, Bellinzona, Switzerland","institution_ids":["https://openalex.org/I4210101830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012537023","display_name":"Luciano Cascione","orcid":"https://orcid.org/0000-0002-4606-0637"},"institutions":[{"id":"https://openalex.org/I4210101830","display_name":"Institute of Oncology Research","ror":"https://ror.org/01dpyn972","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210101830","https://openalex.org/I57201433"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Luciano Cascione","raw_affiliation_strings":["Institute of Oncology Research, Bellinzona, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Oncology Research, Bellinzona, Switzerland","institution_ids":["https://openalex.org/I4210101830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090059379","display_name":"Philip N. Tsichlis","orcid":"https://orcid.org/0000-0002-5300-0448"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Philip N. Tsichlis","raw_affiliation_strings":["Department of Cancer Biology and Genetics, The Ohio State University, Columbus, OH, USA"],"affiliations":[{"raw_affiliation_string":"Department of Cancer Biology and Genetics, The Ohio State University, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000272110","display_name":"Alfredo Ferro","orcid":"https://orcid.org/0000-0002-9431-5788"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alfredo Ferro","raw_affiliation_strings":["Department of Clinical and Experimental Medicine, Bioinformatics Unit, University of Catania, Catania, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Clinical and Experimental Medicine, Bioinformatics Unit, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034617053","display_name":"Roberta Bosotti","orcid":"https://orcid.org/0000-0002-5467-6212"},"institutions":[{"id":"https://openalex.org/I4210127540","display_name":"Nerviano Medical Sciences","ror":"https://ror.org/038mzt421","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210127540"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Roberta Bosotti","raw_affiliation_strings":["Nerviano Medical Sciences, Nerviano, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Nerviano Medical Sciences, Nerviano, Milan, Italy","institution_ids":["https://openalex.org/I4210127540"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057481978","display_name":"Alfredo Pulvirenti","orcid":"https://orcid.org/0000-0002-9764-0295"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alfredo Pulvirenti","raw_affiliation_strings":["Department of Clinical and Experimental Medicine, Bioinformatics Unit, University of Catania, Catania, Italy. alfredo.pulvirenti@unict.it","Department of Clinical and Experimental Medicine, Bioinformatics Unit, University of Catania, Catania, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Clinical and Experimental Medicine, Bioinformatics Unit, University of Catania, Catania, Italy. alfredo.pulvirenti@unict.it","institution_ids":["https://openalex.org/I39063666"]},{"raw_affiliation_string":"Department of Clinical and Experimental Medicine, Bioinformatics Unit, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5056591256"],"corresponding_institution_ids":["https://openalex.org/I39063666","https://openalex.org/I52357470"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.2199,"has_fulltext":true,"cited_by_count":30,"citation_normalized_percentile":{"value":0.78642156,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"22","issue":"1","first_page":"298","last_page":"298"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.6718127727508545},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6596949100494385},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5685479640960693},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.5393625497817993},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5198026895523071},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.44943439960479736},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.4406147599220276},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.4381794035434723},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.3381345570087433},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3372015953063965},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14400053024291992},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10005521774291992},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09474024176597595},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09472408890724182}],"concepts":[{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.6718127727508545},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6596949100494385},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5685479640960693},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.5393625497817993},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5198026895523071},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.44943439960479736},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.4406147599220276},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.4381794035434723},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.3381345570087433},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3372015953063965},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14400053024291992},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10005521774291992},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09474024176597595},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09472408890724182},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000067917","descriptor_name":"Cloud Computing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000081246","descriptor_name":"RNA-Seq","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/s12859-021-04211-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04211-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04211-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:34082707","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34082707","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:4e360b93746c4bf4a5e05628bf5e1e7a","is_oa":true,"landing_page_url":"https://doaj.org/article/4e360b93746c4bf4a5e05628bf5e1e7a","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 22, Iss 1, Pp 1-16 (2021)","raw_type":"article"},{"id":"pmh:oai:iris.unipa.it:10447/624023","is_oa":true,"landing_page_url":"https://hdl.handle.net/10447/624023","pdf_url":null,"source":{"id":"https://openalex.org/S4306401065","display_name":"Nova Science Publishers (Nova Science Publishers, Inc.)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8173825","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8173825","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-021-04211-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-021-04211-7","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/s12859-021-04211-7","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4399999976158142}],"awards":[{"id":"https://openalex.org/G1464101492","display_name":null,"funder_award_id":"FESR 2014-2020","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G1864859138","display_name":null,"funder_award_id":"PO-FESR Sicilia 2014-2020","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G1900673990","display_name":null,"funder_award_id":"PON RI FSE-FESR 2014-2020","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G2484832597","display_name":null,"funder_award_id":"2014-2020","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G453067482","display_name":null,"funder_award_id":"014-2020","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G5634946813","display_name":null,"funder_award_id":"2014-2020","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G7910729340","display_name":null,"funder_award_id":"B96G18000590005","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"}],"funders":[{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3164934299.pdf","grobid_xml":"https://content.openalex.org/works/W3164934299.grobid-xml"},"referenced_works_count":76,"referenced_works":["https://openalex.org/W1575937113","https://openalex.org/W1588187133","https://openalex.org/W1875404178","https://openalex.org/W1954530082","https://openalex.org/W1964916549","https://openalex.org/W1969435367","https://openalex.org/W1981509058","https://openalex.org/W1993165035","https://openalex.org/W2007159807","https://openalex.org/W2014208702","https://openalex.org/W2021137575","https://openalex.org/W2024643935","https://openalex.org/W2027622269","https://openalex.org/W2053782598","https://openalex.org/W2075863097","https://openalex.org/W2077280260","https://openalex.org/W2077327925","https://openalex.org/W2084821192","https://openalex.org/W2095932050","https://openalex.org/W2100819808","https://openalex.org/W2100966665","https://openalex.org/W2102278945","https://openalex.org/W2103441770","https://openalex.org/W2109288169","https://openalex.org/W2112810020","https://openalex.org/W2114104545","https://openalex.org/W2115662330","https://openalex.org/W2119298573","https://openalex.org/W2119884047","https://openalex.org/W2120500419","https://openalex.org/W2124093250","https://openalex.org/W2130305733","https://openalex.org/W2131136499","https://openalex.org/W2132832769","https://openalex.org/W2134513968","https://openalex.org/W2134526812","https://openalex.org/W2138207763","https://openalex.org/W2142380702","https://openalex.org/W2143051000","https://openalex.org/W2146512944","https://openalex.org/W2146728635","https://openalex.org/W2147625377","https://openalex.org/W2147761046","https://openalex.org/W2160828096","https://openalex.org/W2162816478","https://openalex.org/W2162977292","https://openalex.org/W2169456326","https://openalex.org/W2179438025","https://openalex.org/W2228647225","https://openalex.org/W2336957559","https://openalex.org/W2350123421","https://openalex.org/W2571119285","https://openalex.org/W2592811885","https://openalex.org/W2599812844","https://openalex.org/W2765884490","https://openalex.org/W2765992771","https://openalex.org/W2776048895","https://openalex.org/W2777208796","https://openalex.org/W2801332475","https://openalex.org/W2883981220","https://openalex.org/W2887110521","https://openalex.org/W2898731714","https://openalex.org/W2916646804","https://openalex.org/W2936913987","https://openalex.org/W2949583997","https://openalex.org/W2950215920","https://openalex.org/W2952421891","https://openalex.org/W2964849163","https://openalex.org/W2990598339","https://openalex.org/W2992839032","https://openalex.org/W2996796392","https://openalex.org/W3012595987","https://openalex.org/W3156600719","https://openalex.org/W4239699492","https://openalex.org/W4241673858","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W4394359997","https://openalex.org/W4362511652","https://openalex.org/W4362511917","https://openalex.org/W4362511922","https://openalex.org/W4362485688","https://openalex.org/W4362530184","https://openalex.org/W4362530193","https://openalex.org/W2904597490","https://openalex.org/W4362485661","https://openalex.org/W4394365953"],"abstract_inverted_index":{"RNAdetector":[0],"is":[1],"a":[2],"new":[3],"software":[4],"that":[5],"fills":[6],"an":[7],"essential":[8],"gap":[9],"between":[10],"the":[11],"needs":[12],"of":[13,26],"biomedical":[14],"and":[15,22],"research":[16],"labs":[17],"to":[18,40],"process":[19],"RNA-Seq":[20],"data":[21],"their":[23],"common":[24],"lack":[25],"technical":[27],"background":[28],"in":[29],"performing":[30],"such":[31,38],"analysis,":[32],"which":[33],"usually":[34],"relies":[35],"on":[36],"outsourcing":[37],"steps":[39],"third":[41],"party":[42],"bioinformatics":[43],"facilities":[44],"or":[45],"using":[46],"expensive":[47],"commercial":[48],"software.":[49]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":1}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}
