{"id":"https://openalex.org/W2062610273","doi":"https://doi.org/10.1186/s12859-014-0357-3","title":"NeatFreq: reference-free data reduction and coverage normalization for De Novosequence assembly","display_name":"NeatFreq: reference-free data reduction and coverage normalization for De Novosequence assembly","publication_year":2014,"publication_date":"2014-11-18","ids":{"openalex":"https://openalex.org/W2062610273","doi":"https://doi.org/10.1186/s12859-014-0357-3","mag":"2062610273","pmid":"https://pubmed.ncbi.nlm.nih.gov/25407910"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-014-0357-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0357-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0357-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0357-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046196541","display_name":"Jamison McCorrison","orcid":"https://orcid.org/0000-0002-4807-0847"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jamison M McCorrison","raw_affiliation_strings":["Informatics Core Services, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD, 20850, USA. jmccorri@jcvi.org","Informatics Core Services, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, 20850, MD, USA"],"affiliations":[{"raw_affiliation_string":"Informatics Core Services, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD, 20850, USA. jmccorri@jcvi.org","institution_ids":[]},{"raw_affiliation_string":"Informatics Core Services, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, 20850, MD, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061018682","display_name":"Pratap Venepally","orcid":null},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pratap Venepally","raw_affiliation_strings":["Informatics Core Services, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD, 20850, USA. pratap@jcvi.org","Informatics Core Services, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, 20850, MD, USA"],"affiliations":[{"raw_affiliation_string":"Informatics Core Services, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD, 20850, USA. pratap@jcvi.org","institution_ids":[]},{"raw_affiliation_string":"Informatics Core Services, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, 20850, MD, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089982542","display_name":"Indresh Singh","orcid":"https://orcid.org/0000-0002-5522-0903"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Indresh Singh","raw_affiliation_strings":["Informatics Core Services, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD, 20850, USA. isingh@jcvi.org","Informatics Core Services, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, 20850, MD, USA"],"affiliations":[{"raw_affiliation_string":"Informatics Core Services, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD, 20850, USA. isingh@jcvi.org","institution_ids":[]},{"raw_affiliation_string":"Informatics Core Services, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, 20850, MD, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064828949","display_name":"Derrick E. Fouts","orcid":"https://orcid.org/0000-0003-4323-7668"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Derrick E Fouts","raw_affiliation_strings":["Department of Genomic Medicine, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD, 20850, USA. dfouts@jcvi.org","Department of Genomic Medicine, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, 20850, MD, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genomic Medicine, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD, 20850, USA. dfouts@jcvi.org","institution_ids":[]},{"raw_affiliation_string":"Department of Genomic Medicine, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, 20850, MD, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041386145","display_name":"Roger S. Lasken","orcid":null},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roger S Lasken","raw_affiliation_strings":["Department of Microbial & Environmental Genomics, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD20850, USA. rlasken@jcvi.org","Department of Microbial & Environmental Genomics, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD20850, USA"],"affiliations":[{"raw_affiliation_string":"Department of Microbial & Environmental Genomics, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD20850, USA. rlasken@jcvi.org","institution_ids":[]},{"raw_affiliation_string":"Department of Microbial & Environmental Genomics, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD20850, USA","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076389214","display_name":"Barbara A. Meth\u00e9","orcid":"https://orcid.org/0000-0001-8711-1448"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Barbara A Meth\u00e9","raw_affiliation_strings":["Department of Genomic Medicine, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD, 20850, USA. bmethe@jcvi.org","Department of Microbial & Environmental Genomics, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD20850, USA. bmethe@jcvi.org","Department of Microbial & Environmental Genomics, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD20850, USA"],"affiliations":[{"raw_affiliation_string":"Department of Genomic Medicine, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD, 20850, USA. bmethe@jcvi.org","institution_ids":[]},{"raw_affiliation_string":"Department of Microbial & Environmental Genomics, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD20850, USA. bmethe@jcvi.org","institution_ids":[]},{"raw_affiliation_string":"Department of Microbial & Environmental Genomics, The J. Craig Venter Institute (JCVI), 9704 Medical Center Drive, Rockville, MD20850, USA","institution_ids":["https://openalex.org/I1301553790"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5046196541"],"corresponding_institution_ids":["https://openalex.org/I1301553790"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7101,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.69999759,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"15","issue":"1","first_page":"357","last_page":"357"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.7123771905899048},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.6885068416595459},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.6086714863777161},{"id":"https://openalex.org/keywords/deep-sequencing","display_name":"Deep sequencing","score":0.579699695110321},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5581402778625488},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.5369458198547363},{"id":"https://openalex.org/keywords/hybrid-genome-assembly","display_name":"Hybrid genome assembly","score":0.5159452557563782},{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.5152207016944885},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4948987364768982},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4644221365451813},{"id":"https://openalex.org/keywords/single-cell-sequencing","display_name":"Single cell sequencing","score":0.45578426122665405},{"id":"https://openalex.org/keywords/normalization","display_name":"Normalization (sociology)","score":0.43491899967193604},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4244332015514374},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4075632095336914},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3928696811199188},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23060289025306702},{"id":"https://openalex.org/keywords/exome-sequencing","display_name":"Exome sequencing","score":0.2088426649570465},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.1277739405632019},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.11424398422241211},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10580486059188843}],"concepts":[{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.7123771905899048},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.6885068416595459},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.6086714863777161},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.579699695110321},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5581402778625488},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.5369458198547363},{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.5159452557563782},{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.5152207016944885},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4948987364768982},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4644221365451813},{"id":"https://openalex.org/C174749747","wikidata":"https://www.wikidata.org/wiki/Q15917269","display_name":"Single cell sequencing","level":5,"score":0.45578426122665405},{"id":"https://openalex.org/C136886441","wikidata":"https://www.wikidata.org/wiki/Q926129","display_name":"Normalization (sociology)","level":2,"score":0.43491899967193604},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4244332015514374},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4075632095336914},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3928696811199188},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23060289025306702},{"id":"https://openalex.org/C16671776","wikidata":"https://www.wikidata.org/wiki/Q5420592","display_name":"Exome sequencing","level":4,"score":0.2088426649570465},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.1277739405632019},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.11424398422241211},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10580486059188843},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.0},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C19165224","wikidata":"https://www.wikidata.org/wiki/Q23404","display_name":"Anthropology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s12859-014-0357-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0357-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0357-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25407910","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25407910","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3212513","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4245761","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4245761","is_oa":true,"landing_page_url":"http://doi.org/10.1186/s12859-014-0357-3","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s12859-014-0357-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-014-0357-3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/s12859-014-0357-3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306085","display_name":"U.S. Department of Health and Human Services","ror":"https://ror.org/033jnv181"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2062610273.pdf","grobid_xml":"https://content.openalex.org/works/W2062610273.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1578516052","https://openalex.org/W1912338927","https://openalex.org/W1968762427","https://openalex.org/W1973862547","https://openalex.org/W1979761600","https://openalex.org/W1998663222","https://openalex.org/W2009391851","https://openalex.org/W2013935032","https://openalex.org/W2036897871","https://openalex.org/W2037444377","https://openalex.org/W2041943305","https://openalex.org/W2051397417","https://openalex.org/W2091245185","https://openalex.org/W2112515280","https://openalex.org/W2113287691","https://openalex.org/W2120902911","https://openalex.org/W2122080645","https://openalex.org/W2124451996","https://openalex.org/W2127230663","https://openalex.org/W2133956160","https://openalex.org/W2141920662","https://openalex.org/W2142749416","https://openalex.org/W2146918217","https://openalex.org/W2151017710","https://openalex.org/W2156125289","https://openalex.org/W2159591897","https://openalex.org/W2169242924","https://openalex.org/W4285719527","https://openalex.org/W6602124240"],"related_works":["https://openalex.org/W367034151","https://openalex.org/W4376136792","https://openalex.org/W2008090296","https://openalex.org/W4250418529","https://openalex.org/W4322485252","https://openalex.org/W2951076599","https://openalex.org/W2165847428","https://openalex.org/W2119446082","https://openalex.org/W2778510927","https://openalex.org/W4223616223"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-08T08:50:53.379069","created_date":"2025-10-10T00:00:00"}
