{"id":"https://openalex.org/W2134123662","doi":"https://doi.org/10.1186/2041-1480-5-51","title":"Comparative analysis of knowledge representation and reasoning requirements across a range of life sciences textbooks","display_name":"Comparative analysis of knowledge representation and reasoning requirements across a range of life sciences textbooks","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2134123662","doi":"https://doi.org/10.1186/2041-1480-5-51","mag":"2134123662","pmid":"https://pubmed.ncbi.nlm.nih.gov/25785183"},"language":"en","primary_location":{"id":"doi:10.1186/2041-1480-5-51","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-51","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-51","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-51","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5021474475","display_name":"Vinay K. Chaudhri","orcid":"https://orcid.org/0000-0002-1363-645X"},"institutions":[{"id":"https://openalex.org/I4210099336","display_name":"Menlo School","ror":"https://ror.org/01240pn49","country_code":"US","type":"education","lineage":["https://openalex.org/I4210099336"]},{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vinay K Chaudhri","raw_affiliation_strings":["SRI International, Menlo Park, CA 94025 USA","SRI International, Menlo Park, CA, 94025, USA"],"affiliations":[{"raw_affiliation_string":"SRI International, Menlo Park, CA 94025 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210099336"]},{"raw_affiliation_string":"SRI International, Menlo Park, CA, 94025, USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210099336"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007525901","display_name":"Daniel Elenius","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099336","display_name":"Menlo School","ror":"https://ror.org/01240pn49","country_code":"US","type":"education","lineage":["https://openalex.org/I4210099336"]},{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Elenius","raw_affiliation_strings":["SRI International, Menlo Park, CA 94025 USA","SRI International, Menlo Park, CA, 94025, USA"],"affiliations":[{"raw_affiliation_string":"SRI International, Menlo Park, CA 94025 USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210099336"]},{"raw_affiliation_string":"SRI International, Menlo Park, CA, 94025, USA","institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210099336"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066106484","display_name":"Andrew Goldenkranz","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andrew Goldenkranz","raw_affiliation_strings":["Monta Vista High School, Cupertino, CA USA","Monta Vista High School, Cupertino, CA, USA"],"affiliations":[{"raw_affiliation_string":"Monta Vista High School, Cupertino, CA USA","institution_ids":[]},{"raw_affiliation_string":"Monta Vista High School, Cupertino, CA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008115300","display_name":"Allison Gong","orcid":null},"institutions":[{"id":"https://openalex.org/I118069387","display_name":"Cabrillo College","ror":"https://ror.org/04srpvh96","country_code":"US","type":"education","lineage":["https://openalex.org/I118069387"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Allison Gong","raw_affiliation_strings":["Cabrillo College, Aptos, CA USA","Cabrillo College, Aptos, CA, USA"],"affiliations":[{"raw_affiliation_string":"Cabrillo College, Aptos, CA USA","institution_ids":[]},{"raw_affiliation_string":"Cabrillo College, Aptos, CA, USA","institution_ids":["https://openalex.org/I118069387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061037631","display_name":"Maryann E. Martone","orcid":"https://orcid.org/0000-0002-8406-3871"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maryann E Martone","raw_affiliation_strings":["University of California, San Diego, CA USA","University of California, San Diego, CA, USA"],"affiliations":[{"raw_affiliation_string":"University of California, San Diego, CA USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"University of California, San Diego, CA, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110745952","display_name":"William Webb","orcid":null},"institutions":[{"id":"https://openalex.org/I26730717","display_name":"Foothill College","ror":"https://ror.org/00dhmq281","country_code":"US","type":"education","lineage":["https://openalex.org/I26730717"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Webb","raw_affiliation_strings":["Foothill Community College, Los Altos Hills, CA USA","Foothill Community College, Los Altos Hills, CA, USA"],"affiliations":[{"raw_affiliation_string":"Foothill Community College, Los Altos Hills, CA USA","institution_ids":[]},{"raw_affiliation_string":"Foothill Community College, Los Altos Hills, CA, USA","institution_ids":["https://openalex.org/I26730717"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006046553","display_name":"Neil Yorke\u2010Smith","orcid":"https://orcid.org/0000-0002-1814-3515"},"institutions":[{"id":"https://openalex.org/I98635879","display_name":"American University of Beirut","ror":"https://ror.org/04pznsd21","country_code":"LB","type":"education","lineage":["https://openalex.org/I98635879"]}],"countries":["LB"],"is_corresponding":false,"raw_author_name":"Neil Yorke-Smith","raw_affiliation_strings":["American University of Beirut, Beirut, Lebanon ; University of Cambridge, Cambridge, UK","American University of Beirut, Beirut, Lebanon"],"affiliations":[{"raw_affiliation_string":"American University of Beirut, Beirut, Lebanon ; University of Cambridge, Cambridge, UK","institution_ids":[]},{"raw_affiliation_string":"American University of Beirut, Beirut, Lebanon","institution_ids":["https://openalex.org/I98635879"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5021474475"],"corresponding_institution_ids":["https://openalex.org/I1298353152","https://openalex.org/I4210099336"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.2852,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.60798058,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"5","issue":"1","first_page":"51","last_page":"51"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.972100019454956,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6909828186035156},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6019162535667419},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.4772995710372925},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.46763160824775696},{"id":"https://openalex.org/keywords/range","display_name":"Range (aeronautics)","score":0.4340669810771942},{"id":"https://openalex.org/keywords/question-answering","display_name":"Question answering","score":0.4277370572090149},{"id":"https://openalex.org/keywords/mathematics-education","display_name":"Mathematics education","score":0.3571866750717163},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25957831740379333},{"id":"https://openalex.org/keywords/epistemology","display_name":"Epistemology","score":0.21856477856636047},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.20016133785247803}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6909828186035156},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6019162535667419},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.4772995710372925},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.46763160824775696},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.4340669810771942},{"id":"https://openalex.org/C44291984","wikidata":"https://www.wikidata.org/wiki/Q1074173","display_name":"Question answering","level":2,"score":0.4277370572090149},{"id":"https://openalex.org/C145420912","wikidata":"https://www.wikidata.org/wiki/Q853077","display_name":"Mathematics education","level":1,"score":0.3571866750717163},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25957831740379333},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.21856477856636047},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.20016133785247803},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/2041-1480-5-51","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-51","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-51","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:25785183","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25785183","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:ark:/13030/qt8718c5rn","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:escholarship.org/ark:/13030/qt8718c5rn","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/8718c5rn","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of biomedical semantics, vol 5, iss 1","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4362633","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4362633","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/2041-1480-5-51","is_oa":true,"landing_page_url":"https://doi.org/10.1186/2041-1480-5-51","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/2041-1480-5-51","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.550000011920929}],"awards":[{"id":"https://openalex.org/G1372945740","display_name":null,"funder_award_id":"Technology","funder_id":"https://openalex.org/F4320322015","funder_display_name":"University of Toronto"}],"funders":[{"id":"https://openalex.org/F4320308518","display_name":"Wellesley College","ror":"https://ror.org/01srpnj69"},{"id":"https://openalex.org/F4320309999","display_name":"American University of Beirut","ror":"https://ror.org/04pznsd21"},{"id":"https://openalex.org/F4320310094","display_name":"University of Washington","ror":"https://ror.org/00cvxb145"},{"id":"https://openalex.org/F4320320283","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10"},{"id":"https://openalex.org/F4320320712","display_name":"Indian Institute of Technology Kanpur","ror":"https://ror.org/05pjsgx75"},{"id":"https://openalex.org/F4320322015","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087"},{"id":"https://openalex.org/F4320322225","display_name":"Link\u00f6pings Universitet","ror":"https://ror.org/05ynxx418"},{"id":"https://openalex.org/F4320332180","display_name":"Defense Advanced Research Projects Agency","ror":"https://ror.org/02caytj08"},{"id":"https://openalex.org/F4320332603","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2134123662.pdf","grobid_xml":"https://content.openalex.org/works/W2134123662.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W106632145","https://openalex.org/W1484151351","https://openalex.org/W1503647529","https://openalex.org/W1530765221","https://openalex.org/W1530955258","https://openalex.org/W1619326861","https://openalex.org/W1983825849","https://openalex.org/W1990422054","https://openalex.org/W2018481848","https://openalex.org/W2051741066","https://openalex.org/W2054542377","https://openalex.org/W2080948989","https://openalex.org/W2081580037","https://openalex.org/W2099230441","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2110529160","https://openalex.org/W2113024448","https://openalex.org/W2113142309","https://openalex.org/W2127531772","https://openalex.org/W2130854946","https://openalex.org/W2144427809","https://openalex.org/W2150460334","https://openalex.org/W2156226590","https://openalex.org/W2171278097","https://openalex.org/W2185354949","https://openalex.org/W2201043149","https://openalex.org/W2339183141","https://openalex.org/W2395673464","https://openalex.org/W2396653483","https://openalex.org/W2399486411","https://openalex.org/W2407668501","https://openalex.org/W2408421176","https://openalex.org/W2735374180","https://openalex.org/W2965858921","https://openalex.org/W3098606030","https://openalex.org/W3192048314","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2384605597","https://openalex.org/W2387743295","https://openalex.org/W3082787378","https://openalex.org/W2136007095","https://openalex.org/W2366230879","https://openalex.org/W3208425359","https://openalex.org/W2349927912","https://openalex.org/W2045726866","https://openalex.org/W2354320020","https://openalex.org/W1998044538"],"abstract_inverted_index":{"With":[0],"some":[1],"additional":[2],"work,":[3],"our":[4,37],"representation":[5,19,38],"methodology":[6],"would":[7],"be":[8],"applicable":[9],"to":[10,55],"a":[11,26,52],"range":[12],"of":[13,61],"textbooks.":[14],"The":[15],"requirements":[16],"for":[17,30,46],"knowledge":[18],"are":[20],"common":[21],"across":[22],"textbooks,":[23],"suggesting":[24],"that":[25],"shared":[27],"semantic":[28],"infrastructure":[29],"the":[31,62],"life":[32,63],"sciences":[33,64],"is":[34],"feasible.":[35],"Because":[36],"overlaps":[39],"heavily":[40],"with":[41],"those":[42],"already":[43],"being":[44],"used":[45],"biomedical":[47],"ontologies,":[48],"this":[49],"work":[50],"suggests":[51],"natural":[53],"pathway":[54],"include":[56],"such":[57],"representations":[58],"as":[59],"part":[60],"curriculum":[65],"at":[66],"different":[67],"grade":[68],"levels.":[69]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
