{"id":"https://openalex.org/W2120655738","doi":"https://doi.org/10.1186/1471-2105-13-183","title":"Short-read reading-frame predictors are not created equal: sequence error causes loss of signal","display_name":"Short-read reading-frame predictors are not created equal: sequence error causes loss of signal","publication_year":2012,"publication_date":"2012-07-28","ids":{"openalex":"https://openalex.org/W2120655738","doi":"https://doi.org/10.1186/1471-2105-13-183","mag":"2120655738","pmid":"https://pubmed.ncbi.nlm.nih.gov/22839106"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-183","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-183","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-183","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-183","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067783602","display_name":"W. Trimble","orcid":"https://orcid.org/0000-0001-7029-2676"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"William L Trimble","raw_affiliation_strings":["Computation Institute, University of Chicago, Chicago, IL 60637, USA. trimble@anl.gov","Computation Institute, University of Chicago, Chicago, USA","Argonne National Laboratory, Argonne, USA"],"affiliations":[{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL 60637, USA. trimble@anl.gov","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Argonne National Laboratory, Argonne, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000209758","display_name":"Kevin Keegan","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin P Keegan","raw_affiliation_strings":["Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, IL, 60439, USA","Computation Institute, University of Chicago, Chicago, IL, 60637, USA","Argonne National Laboratory, Argonne, USA","Computation Institute, University of Chicago, Chicago, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, IL, 60439, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL, 60637, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Argonne National Laboratory, Argonne, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113574097","display_name":"Mark D\u2019Souza","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark D\u2019Souza","raw_affiliation_strings":["Argonne National Laboratory, Argonne, USA","Computation Institute, University of Chicago, Chicago, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, Argonne, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027887614","display_name":"Andreas Wilke","orcid":"https://orcid.org/0000-0002-7699-2267"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andreas Wilke","raw_affiliation_strings":["Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, IL, 60439, USA","Computation Institute, University of Chicago, Chicago, IL, 60637, USA","Computation Institute, University of Chicago, Chicago, USA","Argonne National Laboratory, Argonne, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, IL, 60439, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL, 60637, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Argonne National Laboratory, Argonne, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050332036","display_name":"Jared Wilkening","orcid":null},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jared Wilkening","raw_affiliation_strings":["Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, IL, 60439, USA","Argonne National laboratory, Argonne, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, IL, 60439, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Argonne National laboratory, Argonne, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057060580","display_name":"Jack A. Gilbert","orcid":"https://orcid.org/0000-0001-7920-7001"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jack Gilbert","raw_affiliation_strings":["Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, IL, 60439, USA","Argonne National laboratory, Argonne, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, IL, 60439, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Argonne National laboratory, Argonne, USA","institution_ids":["https://openalex.org/I1282105669"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086419862","display_name":"Folker Meyer","orcid":"https://orcid.org/0000-0003-1112-2284"},"institutions":[{"id":"https://openalex.org/I1282105669","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1282105669","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I40347166"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Folker Meyer","raw_affiliation_strings":["Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, IL, 60439, USA","Computation Institute, University of Chicago, Chicago, IL, 60637, USA","Argonne National Laboratory, Argonne, USA","Computation Institute, University of Chicago, Chicago, USA"],"affiliations":[{"raw_affiliation_string":"Argonne National Laboratory, 9700 S. Cass Avenue, Argonne, IL, 60439, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, IL, 60637, USA","institution_ids":["https://openalex.org/I40347166"]},{"raw_affiliation_string":"Argonne National Laboratory, Argonne, USA","institution_ids":["https://openalex.org/I1282105669"]},{"raw_affiliation_string":"Computation Institute, University of Chicago, Chicago, USA","institution_ids":["https://openalex.org/I40347166"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5067783602"],"corresponding_institution_ids":["https://openalex.org/I1282105669","https://openalex.org/I40347166"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.1514,"has_fulltext":true,"cited_by_count":53,"citation_normalized_percentile":{"value":0.87599641,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"13","issue":"1","first_page":"183","last_page":"183"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-prediction","display_name":"Gene prediction","score":0.8216438889503479},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5775567889213562},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5572696328163147},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.5392893552780151},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.5189383029937744},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4870029091835022},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.48270535469055176},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.4792775809764862},{"id":"https://openalex.org/keywords/open-reading-frame","display_name":"Open reading frame","score":0.4675914943218231},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4640580415725708},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4619837701320648},{"id":"https://openalex.org/keywords/gene-annotation","display_name":"Gene Annotation","score":0.4166983664035797},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41358792781829834},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3603980541229248},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.33792734146118164},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.3262766897678375},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.31847479939460754},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3040073812007904},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2948150038719177},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.23830223083496094},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.11913415789604187}],"concepts":[{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.8216438889503479},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5775567889213562},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5572696328163147},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.5392893552780151},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.5189383029937744},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4870029091835022},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.48270535469055176},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.4792775809764862},{"id":"https://openalex.org/C47289529","wikidata":"https://www.wikidata.org/wiki/Q908550","display_name":"Open reading frame","level":4,"score":0.4675914943218231},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4640580415725708},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4619837701320648},{"id":"https://openalex.org/C2908923196","wikidata":"https://www.wikidata.org/wiki/Q5205742","display_name":"Gene Annotation","level":4,"score":0.4166983664035797},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41358792781829834},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3603980541229248},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.33792734146118164},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.3262766897678375},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.31847479939460754},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3040073812007904},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2948150038719177},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.23830223083496094},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.11913415789604187},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016364","descriptor_name":"Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016364","descriptor_name":"Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016364","descriptor_name":"Reading Frames","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-13-183","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-183","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-183","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22839106","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22839106","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:39acb6de28ea4443ba7eb36c02e7509b","is_oa":true,"landing_page_url":"https://doaj.org/article/39acb6de28ea4443ba7eb36c02e7509b","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss 1, p 183 (2012)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3526449","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3526449","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-183","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-183","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-183","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.8700000047683716,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G1015216249","display_name":null,"funder_award_id":"DE-AC02-06CH1135","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G1116540683","display_name":null,"funder_award_id":"DE-AC02-06CH11","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G1313983767","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320338284","funder_display_name":"Argonne National Laboratory"},{"id":"https://openalex.org/G1844751952","display_name":null,"funder_award_id":"DE-AC02_06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G2094404041","display_name":"MRI:   Acquisition of PADS - A Petscale Active Data Store","funder_award_id":"0821678","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2101401529","display_name":null,"funder_award_id":"Contract No. DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G2542267371","display_name":null,"funder_award_id":"DE-AC02-06CH11357)","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G2777053550","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2887060908","display_name":null,"funder_award_id":"No. DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320338284","funder_display_name":"Argonne National Laboratory"},{"id":"https://openalex.org/G3000213308","display_name":null,"funder_award_id":"DE-AC02-06CH113","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G3075337988","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320338284","funder_display_name":"Argonne National Laboratory"},{"id":"https://openalex.org/G3311144436","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320337509","funder_display_name":"Biological and Environmental Research"},{"id":"https://openalex.org/G3497591915","display_name":null,"funder_award_id":"(NIH)","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3801222974","display_name":null,"funder_award_id":"DE-AC02-06CH1135","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G4145457401","display_name":null,"funder_award_id":"DE-AC02-06CH113","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4679938283","display_name":null,"funder_award_id":"Contract No. DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G4790718960","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320338284","funder_display_name":"Argonne National Laboratory"},{"id":"https://openalex.org/G498139845","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G5085543421","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320338284","funder_display_name":"Argonne National Laboratory"},{"id":"https://openalex.org/G5817817810","display_name":null,"funder_award_id":"No. DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6085113958","display_name":null,"funder_award_id":"E-AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G650626725","display_name":null,"funder_award_id":"E-AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G6558272803","display_name":null,"funder_award_id":"DE-AC02","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6699942780","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6848031779","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6918803902","display_name":null,"funder_award_id":"06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G7110520577","display_name":null,"funder_award_id":"DE-AC02-06CH11357)","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G7230044214","display_name":null,"funder_award_id":"DE-AC02-06CH1135","funder_id":"https://openalex.org/F4320338284","funder_display_name":"Argonne National Laboratory"},{"id":"https://openalex.org/G7348371488","display_name":null,"funder_award_id":"OCI-0821678","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7351994996","display_name":null,"funder_award_id":"DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7368700025","display_name":null,"funder_award_id":"No. DE-AC02-06CH11357","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8143874970","display_name":null,"funder_award_id":"AC02-06CH11357","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8314672274","display_name":null,"funder_award_id":"DE-AC02-06CH11","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8320508866","display_name":null,"funder_award_id":"DE-AC02-06CH11357,","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G8414908677","display_name":null,"funder_award_id":"DE-AC0","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G969889393","display_name":null,"funder_award_id":"DE-AC02-","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320306151","display_name":"Alfred P. Sloan Foundation","ror":"https://ror.org/052csg198"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337506","display_name":"Advanced Scientific Computing Research","ror":"https://ror.org/0012c7r22"},{"id":"https://openalex.org/F4320337509","display_name":"Biological and Environmental Research","ror":"https://ror.org/0114b2m14"},{"id":"https://openalex.org/F4320338284","display_name":"Argonne National Laboratory","ror":"https://ror.org/05gvnxz63"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2120655738.pdf","grobid_xml":"https://content.openalex.org/works/W2120655738.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W1969346416","https://openalex.org/W1970684977","https://openalex.org/W1973067335","https://openalex.org/W1978637977","https://openalex.org/W1980355960","https://openalex.org/W1989348205","https://openalex.org/W2007239153","https://openalex.org/W2011407606","https://openalex.org/W2018526864","https://openalex.org/W2031207772","https://openalex.org/W2032870665","https://openalex.org/W2033705779","https://openalex.org/W2034054753","https://openalex.org/W2040805829","https://openalex.org/W2041117131","https://openalex.org/W2042893247","https://openalex.org/W2048673910","https://openalex.org/W2048818637","https://openalex.org/W2061581770","https://openalex.org/W2061680337","https://openalex.org/W2069689025","https://openalex.org/W2078598330","https://openalex.org/W2099006507","https://openalex.org/W2100670078","https://openalex.org/W2103970813","https://openalex.org/W2105199251","https://openalex.org/W2107903949","https://openalex.org/W2108166985","https://openalex.org/W2128114769","https://openalex.org/W2130077037","https://openalex.org/W2132415967","https://openalex.org/W2135277010","https://openalex.org/W2136145671","https://openalex.org/W2139830149","https://openalex.org/W2143235667","https://openalex.org/W2143485490","https://openalex.org/W2149573313","https://openalex.org/W2151671981","https://openalex.org/W2156296225","https://openalex.org/W2156701707","https://openalex.org/W2159406441","https://openalex.org/W2159788862","https://openalex.org/W2162704968","https://openalex.org/W2164507782","https://openalex.org/W2169035256","https://openalex.org/W2169230701","https://openalex.org/W2170089054","https://openalex.org/W2171575570","https://openalex.org/W2914081640"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2133116680","https://openalex.org/W2141411672","https://openalex.org/W2029514038","https://openalex.org/W2101269698","https://openalex.org/W148719309","https://openalex.org/W2161078126","https://openalex.org/W2125625789","https://openalex.org/W1978156257","https://openalex.org/W3112202720"],"abstract_inverted_index":{"Ab":[0],"initio":[1],"gene":[2,47],"callers":[3],"offer":[4],"a":[5],"significant":[6],"reduction":[7],"in":[8,21,40],"the":[9,35],"computational":[10],"burden":[11],"of":[12],"annotating":[13],"individual":[14],"nucleic":[15],"acid":[16],"reads":[17],"and":[18,53],"are":[19,55],"used":[20],"many":[22],"metagenomic":[23],"annotation":[24],"systems.":[25],"For":[26],"predicting":[27],"reading":[28],"frames":[29],"on":[30],"raw":[31],"reads,":[32],"we":[33],"find":[34],"hidden":[36],"Markov":[37],"model":[38],"approach":[39],"FragGeneScan":[41],"is":[42],"more":[43],"sensitive":[44],"than":[45],"other":[46],"prediction":[48],"tools,":[49],"while":[50],"Prodigal,":[51],"MGA,":[52],"MGM":[54],"better":[56],"suited":[57],"for":[58],"higher-quality":[59],"sequences":[60],"such":[61],"as":[62],"assembled":[63],"contigs.":[64]},"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":5}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
