{"id":"https://openalex.org/W2075283200","doi":"https://doi.org/10.1186/1471-2105-11-213","title":"BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions","display_name":"BiGG: a Biochemical Genetic and Genomic knowledgebase of large scale metabolic reconstructions","publication_year":2010,"publication_date":"2010-04-29","ids":{"openalex":"https://openalex.org/W2075283200","doi":"https://doi.org/10.1186/1471-2105-11-213","mag":"2075283200","pmid":"https://pubmed.ncbi.nlm.nih.gov/20426874"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-11-213","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-213","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-213","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-213","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073396198","display_name":"Jan Schellenberger","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jan Schellenberger","raw_affiliation_strings":["Bioinformatics Program, University of California San Diego, La Jolla, California, 92093-0419, USA","Bioinformatics Program, University of California San Diego, La Jolla, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Program, University of California San Diego, La Jolla, California, 92093-0419, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Bioinformatics Program, University of California San Diego, La Jolla, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073092382","display_name":"Junyoung O. Park","orcid":"https://orcid.org/0000-0001-9869-8993"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Junyoung O Park","raw_affiliation_strings":["Bioengineering Department, University of California San Diego, 9500 Gilman Dr, La Jolla, California, 92093-0412, USA","Bioengineering Department, University of California San Diego, La Jolla, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Department, University of California San Diego, 9500 Gilman Dr, La Jolla, California, 92093-0412, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Bioengineering Department, University of California San Diego, La Jolla, USA","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070206040","display_name":"Tom M Conrad","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tom M Conrad","raw_affiliation_strings":["Department of Chemistry and Biochemistry, University of California San Diego, 9500 Gilman Dr, La Jolla, California, 92093-0332, USA","Department of Chemistry & Biochemistry, University of California San Diego,La Jolla,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry, University of California San Diego, 9500 Gilman Dr, La Jolla, California, 92093-0332, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Chemistry & Biochemistry, University of California San Diego,La Jolla,USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051097609","display_name":"Bernhard \u00d8. Palsson","orcid":"https://orcid.org/0000-0003-2357-6785"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210133661","display_name":"La Jolla Bioengineering Institute","ror":"https://ror.org/03sgbh608","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210133661"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bernhard \u00d8 Palsson","raw_affiliation_strings":["Bioengineering Department, University of California San Diego, 9500 Gilman Dr, La Jolla, California, 92093-0412, USA","Bioengineering Department, University of California San Diego, La Jolla, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioengineering Department, University of California San Diego, 9500 Gilman Dr, La Jolla, California, 92093-0412, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Bioengineering Department, University of California San Diego, La Jolla, USA","institution_ids":["https://openalex.org/I4210133661","https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5051097609"],"corresponding_institution_ids":["https://openalex.org/I36258959","https://openalex.org/I4210133661"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":23.0902,"has_fulltext":true,"cited_by_count":601,"citation_normalized_percentile":{"value":0.9975315,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"11","issue":"1","first_page":"213","last_page":"213"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11882","display_name":"Plant biochemistry and biosynthesis","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.9818634986877441},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.6083239316940308},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.6011506915092468},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5764304399490356},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.574857234954834},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.5270897150039673},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5138214230537415},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48346930742263794},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.45464903116226196},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.447237491607666},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4282635450363159},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.39582890272140503},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2459966242313385},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17082208395004272},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.15800315141677856},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.15238431096076965}],"concepts":[{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.9818634986877441},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.6083239316940308},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.6011506915092468},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5764304399490356},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.574857234954834},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.5270897150039673},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5138214230537415},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48346930742263794},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.45464903116226196},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.447237491607666},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4282635450363159},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39582890272140503},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2459966242313385},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17082208395004272},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.15800315141677856},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.15238431096076965},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-11-213","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-213","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-213","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:20426874","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/20426874","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:ark:/13030/qt5rf0w8df","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:doaj.org/article:6da36c8a39c54603b19a66d25a124806","is_oa":true,"landing_page_url":"https://doaj.org/article/6da36c8a39c54603b19a66d25a124806","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 11, Iss 1, p 213 (2010)","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt5rf0w8df","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/5rf0w8df","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC bioinformatics, vol 11, iss 1","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:2874806","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/2874806","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-11-213","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-11-213","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-11-213","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7117962851","display_name":null,"funder_award_id":"GM00806-06","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2075283200.pdf","grobid_xml":"https://content.openalex.org/works/W2075283200.grobid-xml"},"referenced_works_count":55,"referenced_works":["https://openalex.org/W23768266","https://openalex.org/W1492801100","https://openalex.org/W1525055187","https://openalex.org/W1543388089","https://openalex.org/W1982195171","https://openalex.org/W1993861616","https://openalex.org/W1996529795","https://openalex.org/W1996791690","https://openalex.org/W2004548026","https://openalex.org/W2004964623","https://openalex.org/W2009940763","https://openalex.org/W2017260253","https://openalex.org/W2047632644","https://openalex.org/W2048214825","https://openalex.org/W2056735082","https://openalex.org/W2083011190","https://openalex.org/W2083543502","https://openalex.org/W2085993965","https://openalex.org/W2086016524","https://openalex.org/W2088226054","https://openalex.org/W2096245011","https://openalex.org/W2097588479","https://openalex.org/W2098609989","https://openalex.org/W2102164505","https://openalex.org/W2104108767","https://openalex.org/W2107062718","https://openalex.org/W2107580398","https://openalex.org/W2113329733","https://openalex.org/W2114034054","https://openalex.org/W2119828149","https://openalex.org/W2126175129","https://openalex.org/W2131067724","https://openalex.org/W2133298156","https://openalex.org/W2139924741","https://openalex.org/W2143534289","https://openalex.org/W2144000913","https://openalex.org/W2147472054","https://openalex.org/W2147714160","https://openalex.org/W2150908245","https://openalex.org/W2151023149","https://openalex.org/W2155331065","https://openalex.org/W2156481615","https://openalex.org/W2157635835","https://openalex.org/W2159482845","https://openalex.org/W2161062388","https://openalex.org/W2162237022","https://openalex.org/W2170427655","https://openalex.org/W2315135172","https://openalex.org/W2413290897","https://openalex.org/W2413370696","https://openalex.org/W2472408477","https://openalex.org/W3145366215","https://openalex.org/W4213060373","https://openalex.org/W4238101851","https://openalex.org/W6683775605"],"related_works":["https://openalex.org/W2082621456","https://openalex.org/W2128782793","https://openalex.org/W2981332207","https://openalex.org/W2150908245","https://openalex.org/W2211443823","https://openalex.org/W2043776573","https://openalex.org/W2216418212","https://openalex.org/W2020641517","https://openalex.org/W2075919068","https://openalex.org/W2047632644"],"abstract_inverted_index":{"BACKGROUND:":[0],"Genome-scale":[1],"metabolic":[2,19,64,72,98,155],"reconstructions":[3,32],"under":[4],"the":[5,18,28,106,144],"Constraint":[6],"Based":[7],"Reconstruction":[8],"and":[9,23,33,45,49,60,101,134,157],"Analysis":[10],"(COBRA)":[11],"framework":[12],"are":[13],"valuable":[14],"tools":[15],"for":[16,42,108,163],"analyzing":[17],"capabilities":[20],"of":[21,30,47,57,105,136],"organisms":[22],"interpreting":[24],"experimental":[25],"data.":[26],"As":[27],"number":[29],"such":[31],"analysis":[34,110],"methods":[35],"increases,":[36],"there":[37],"is":[38,160],"a":[39,55,141],"greater":[40],"need":[41,142],"data":[43],"uniformity":[44],"ease":[46],"distribution":[48],"use.":[50],"DESCRIPTION:":[51],"We":[52],"describe":[53],"BiGG,":[54],"knowledgebase":[56],"Biochemically,":[58],"Genetically":[59],"Genomically":[61],"structured":[62],"genome-scale":[63,71],"network":[65],"reconstructions.":[66,158],"BiGG":[67,89,120,139],"integrates":[68],"several":[69,122],"published":[70],"networks":[73],"into":[74],"one":[75],"resource":[76],"with":[77],"standard":[78],"nomenclature":[79],"which":[80],"allows":[81],"components":[82],"to":[83,93,121,125,148,151],"be":[84,91],"compared":[85],"across":[86],"different":[87],"organisms.":[88],"can":[90],"used":[92],"browse":[94],"model":[95],"content,":[96],"visualize":[97],"pathway":[99],"maps,":[100],"export":[102],"SBML":[103],"files":[104],"models":[107,156],"further":[109],"by":[111],"external":[112,123],"software":[113],"packages.":[114],"Users":[115],"may":[116],"follow":[117],"links":[118],"from":[119],"databases":[124],"obtain":[126],"additional":[127],"information":[128],"on":[129],"genes,":[130],"proteins,":[131],"reactions,":[132],"metabolites":[133],"citations":[135],"interest.":[137],"CONCLUSIONS:":[138],"addresses":[140],"in":[143],"systems":[145],"biology":[146],"community":[147],"have":[149],"access":[150],"high":[152],"quality":[153],"curated":[154],"It":[159],"freely":[161],"available":[162],"academic":[164],"use":[165],"at":[166],"http://bigg.ucsd.edu.":[167]},"counts_by_year":[{"year":2026,"cited_by_count":10},{"year":2025,"cited_by_count":22},{"year":2024,"cited_by_count":19},{"year":2023,"cited_by_count":33},{"year":2022,"cited_by_count":22},{"year":2021,"cited_by_count":26},{"year":2020,"cited_by_count":35},{"year":2019,"cited_by_count":28},{"year":2018,"cited_by_count":41},{"year":2017,"cited_by_count":30},{"year":2016,"cited_by_count":48},{"year":2015,"cited_by_count":55},{"year":2014,"cited_by_count":60},{"year":2013,"cited_by_count":60},{"year":2012,"cited_by_count":58}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
