{"id":"https://openalex.org/W4388574810","doi":"https://doi.org/10.1186/s40708-023-00208-5","title":"Semantic representation of neural circuit knowledge in Caenorhabditis elegans","display_name":"Semantic representation of neural circuit knowledge in Caenorhabditis elegans","publication_year":2023,"publication_date":"2023-11-10","ids":{"openalex":"https://openalex.org/W4388574810","doi":"https://doi.org/10.1186/s40708-023-00208-5","pmid":"https://pubmed.ncbi.nlm.nih.gov/37947958"},"language":"en","primary_location":{"id":"doi:10.1186/s40708-023-00208-5","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s40708-023-00208-5","pdf_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-023-00208-5","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-023-00208-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022993375","display_name":"Sharan J. Prakash","orcid":"https://orcid.org/0000-0003-1777-0987"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sharan J. Prakash","raw_affiliation_strings":["Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA"],"raw_orcid":"https://orcid.org/0000-0003-1777-0987","affiliations":[{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034108611","display_name":"Kimberly Van Auken","orcid":"https://orcid.org/0000-0002-1706-4196"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kimberly M. Van Auken","raw_affiliation_strings":["Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA"],"raw_orcid":"https://orcid.org/0000-0002-1706-4196","affiliations":[{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029292423","display_name":"David P. Hill","orcid":"https://orcid.org/0000-0001-7476-6306"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David P. Hill","raw_affiliation_strings":["The Jackson Laboratory, Bar Harbor, ME, 04609, USA"],"raw_orcid":"https://orcid.org/0000-0001-7476-6306","affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, ME, 04609, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033624132","display_name":"Paul W. Sternberg","orcid":"https://orcid.org/0000-0002-7699-0173"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Paul W. Sternberg","raw_affiliation_strings":["Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA. pws@caltech.edu","Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA"],"raw_orcid":"https://orcid.org/0000-0002-7699-0173","affiliations":[{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA. pws@caltech.edu","institution_ids":["https://openalex.org/I122411786"]},{"raw_affiliation_string":"Division of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA, 91125, USA","institution_ids":["https://openalex.org/I122411786"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5033624132"],"corresponding_institution_ids":["https://openalex.org/I122411786"],"apc_list":{"value":990,"currency":"USD","value_usd":990},"apc_paid":{"value":990,"currency":"USD","value_usd":990},"fwci":0.1394,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.42052426,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"10","issue":"1","first_page":"30","last_page":"30"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9771000146865845,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.715268075466156},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6605606079101562},{"id":"https://openalex.org/keywords/caenorhabditis-elegans","display_name":"Caenorhabditis elegans","score":0.6324774622917175},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.538986086845398},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.5369588732719421},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.48266035318374634},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.44095444679260254},{"id":"https://openalex.org/keywords/semantic-network","display_name":"Semantic network","score":0.42997413873672485},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4210670292377472},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.33474063873291016},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32975858449935913},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14450958371162415},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1348864734172821},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09258812665939331}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.715268075466156},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6605606079101562},{"id":"https://openalex.org/C2778944004","wikidata":"https://www.wikidata.org/wiki/Q91703","display_name":"Caenorhabditis elegans","level":3,"score":0.6324774622917175},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.538986086845398},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.5369588732719421},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48266035318374634},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.44095444679260254},{"id":"https://openalex.org/C85407183","wikidata":"https://www.wikidata.org/wiki/Q1045785","display_name":"Semantic network","level":2,"score":0.42997413873672485},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4210670292377472},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.33474063873291016},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32975858449935913},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14450958371162415},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1348864734172821},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09258812665939331},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s40708-023-00208-5","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s40708-023-00208-5","pdf_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-023-00208-5","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},{"id":"pmid:37947958","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37947958","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain informatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10638142","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10638142","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10638142/pdf/40708_2023_Article_208.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brain Inform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:976e3ce1efe248fdb45b9f9a72b4f0bf","is_oa":true,"landing_page_url":"https://doaj.org/article/976e3ce1efe248fdb45b9f9a72b4f0bf","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brain Informatics, Vol 10, Iss 1, Pp 1-26 (2023)","raw_type":"article"},{"id":"pmh:oai:mouseion.jax.org:stfb2023-1295","is_oa":true,"landing_page_url":"https://mouseion.jax.org/stfb2023/319","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2023","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1186/s40708-023-00208-5","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1186/s40708-023-00208-5","pdf_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-023-00208-5","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1365423410","display_name":null,"funder_award_id":"U24HG010859","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2820513190","display_name":null,"funder_award_id":"U41 HG002273","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G3713641797","display_name":null,"funder_award_id":"U24 HG012212","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G3978529930","display_name":null,"funder_award_id":"U24 HG010859","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G4771238671","display_name":null,"funder_award_id":"U24HG010859-03S2","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5170952278","display_name":null,"funder_award_id":"P41 HG002273","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G6340323725","display_name":null,"funder_award_id":"R01 HG002273","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G832945463","display_name":null,"funder_award_id":"U24HG012212","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"}],"funders":[{"id":"https://openalex.org/F4320309398","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4388574810.pdf","grobid_xml":"https://content.openalex.org/works/W4388574810.grobid-xml"},"referenced_works_count":79,"referenced_works":["https://openalex.org/W43478227","https://openalex.org/W1486592449","https://openalex.org/W1612484725","https://openalex.org/W1652342837","https://openalex.org/W1770716405","https://openalex.org/W1790499166","https://openalex.org/W1840564118","https://openalex.org/W1904902384","https://openalex.org/W1904905451","https://openalex.org/W1935434993","https://openalex.org/W1948927501","https://openalex.org/W1967293029","https://openalex.org/W1969085803","https://openalex.org/W1989783465","https://openalex.org/W1993272672","https://openalex.org/W1997846079","https://openalex.org/W2008785965","https://openalex.org/W2009821005","https://openalex.org/W2009912939","https://openalex.org/W2019518843","https://openalex.org/W2023368750","https://openalex.org/W2025681452","https://openalex.org/W2031282466","https://openalex.org/W2033579242","https://openalex.org/W2038870041","https://openalex.org/W2041294372","https://openalex.org/W2041321444","https://openalex.org/W2054712073","https://openalex.org/W2054914622","https://openalex.org/W2061425021","https://openalex.org/W2064401954","https://openalex.org/W2065624887","https://openalex.org/W2066682414","https://openalex.org/W2069157810","https://openalex.org/W2070083683","https://openalex.org/W2076789430","https://openalex.org/W2078683173","https://openalex.org/W2083529598","https://openalex.org/W2094185980","https://openalex.org/W2097557113","https://openalex.org/W2097921303","https://openalex.org/W2102784154","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2105182699","https://openalex.org/W2105326400","https://openalex.org/W2107518572","https://openalex.org/W2110458673","https://openalex.org/W2112357421","https://openalex.org/W2128155158","https://openalex.org/W2129420942","https://openalex.org/W2137600012","https://openalex.org/W2141752067","https://openalex.org/W2159675211","https://openalex.org/W2161758212","https://openalex.org/W2164693027","https://openalex.org/W2169623616","https://openalex.org/W2171247261","https://openalex.org/W2345615595","https://openalex.org/W2514803758","https://openalex.org/W2592109946","https://openalex.org/W2605252168","https://openalex.org/W2802053346","https://openalex.org/W2900353268","https://openalex.org/W2948949781","https://openalex.org/W2949785376","https://openalex.org/W2973232653","https://openalex.org/W3038601808","https://openalex.org/W3087217357","https://openalex.org/W3112600195","https://openalex.org/W3134935755","https://openalex.org/W3159931622","https://openalex.org/W3163048757","https://openalex.org/W3199707790","https://openalex.org/W3208338710","https://openalex.org/W3209873373","https://openalex.org/W4225892120","https://openalex.org/W4318046676","https://openalex.org/W4321748975"],"related_works":["https://openalex.org/W2045726866","https://openalex.org/W2354320020","https://openalex.org/W4247277368","https://openalex.org/W1998044538","https://openalex.org/W2057110953","https://openalex.org/W2170494265","https://openalex.org/W2080395062","https://openalex.org/W2323995692","https://openalex.org/W2103804958","https://openalex.org/W2381282227"],"abstract_inverted_index":{"Abstract":[0,245],"In":[1,115],"modern":[2],"biology,":[3],"new":[4,19],"knowledge":[5,45,64,126],"is":[6],"generated":[7],"quickly,":[8],"making":[9],"it":[10],"challenging":[11],"for":[12,78,206],"researchers":[13],"to":[14,75,100,160,201,221,236],"efficiently":[15],"acquire":[16],"and":[17,62,136,180],"synthesise":[18],"information":[20],"from":[21,59,170],"the":[22,42,121,128,139,171,174,224,234],"large":[23],"volume":[24],"of":[25,38,44,56,103,127,167,178,209,241],"primary":[26],"publications.":[27],"To":[28],"address":[29],"this":[30,116,196],"problem,":[31],"computational":[32],"approaches":[33],"that":[34,94],"generate":[35,202],"machine-readable":[36,239],"representations":[37,51,240],"scientific":[39],"findings":[40],"in":[41,66,138],"form":[43],"graphs":[46],"have":[47],"been":[48],"developed.":[49],"These":[50],"can":[52],"integrate":[53],"different":[54],"types":[55],"experimental":[57,210],"data":[58,69,204],"multiple":[60],"papers":[61],"biological":[63,107],"bases":[65],"a":[67,72,90,164],"unifying":[68],"model,":[70],"providing":[71],"complementary":[73],"method":[74],"manual":[76],"review":[77],"interacting":[79],"with":[80,192],"published":[81],"knowledge.":[82,243],"The":[83],"Gene":[84,229],"Ontology":[85],"Consortium":[86],"(GOC)":[87],"has":[88,233],"created":[89],"semantic":[91,216,231],"modelling":[92,217,232],"framework":[93,123],"extends":[95],"individual":[96],"functional":[97],"gene":[98],"annotations":[99],"structured":[101],"descriptions":[102],"causal":[104,129],"networks":[105],"representing":[106],"processes":[108],"(Gene":[109],"Ontology\u2013Causal":[110],"Activity":[111,149],"Modelling,":[112],"or":[113],"GO\u2013CAM).":[114],"study,":[117],"we":[118,198],"explored":[119],"whether":[120],"GO\u2013CAM":[122],"could":[124,188],"represent":[125],"relationships":[130],"between":[131],"environmental":[132],"inputs,":[133],"neural":[134,175],"circuits":[135],"behavior":[137],"model":[140],"nematode":[141],"C.":[142,145,225],"elegans":[143,146,226],"[":[144],"Neural\u2013Circuit":[147],"Causal":[148],"Modelling":[150],"(":[151],"Ce":[152,193],"N\u2013CAM)]":[153],".":[154],"We":[155,212],"found":[156],"that,":[157],"given":[158],"extensions":[159],"several":[161,207],"relevant":[162],"ontologies,":[163],"wide":[165],"variety":[166],"author":[168],"statements":[169],"literature":[172],"about":[173],"circuit":[176],"basis":[177],"egg-laying":[179],"carbon":[181],"dioxide":[182],"(CO":[183],"2":[184],")":[185],"avoidance":[186],"behaviors":[187],"be":[189,219],"faithfully":[190],"represented":[191],"N\u2013CAM.":[194],"Through":[195],"process,":[197],"were":[199],"able":[200],"generic":[203],"models":[205],"categories":[208],"results.":[211],"also":[213],"discuss":[214],"how":[215],"may":[218],"used":[220],"functionally":[222],"annotate":[223],"connectome.":[227],"Thus,":[228],"Ontology-based":[230],"potential":[235],"support":[237],"various":[238],"neurobiological":[242],"Graphical":[244]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
