{"id":"https://openalex.org/W4386552783","doi":"https://doi.org/10.1186/s40708-023-00202-x","title":"Automatic identification of scientific publications describing digital reconstructions of neural morphology","display_name":"Automatic identification of scientific publications describing digital reconstructions of neural morphology","publication_year":2023,"publication_date":"2023-09-08","ids":{"openalex":"https://openalex.org/W4386552783","doi":"https://doi.org/10.1186/s40708-023-00202-x","pmid":"https://pubmed.ncbi.nlm.nih.gov/37684527"},"language":"en","primary_location":{"id":"doi:10.1186/s40708-023-00202-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40708-023-00202-x","pdf_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-023-00202-x","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-023-00202-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057385529","display_name":"Patricia Maraver","orcid":null},"institutions":[{"id":"https://openalex.org/I4210145583","display_name":"Bioengineering Center","ror":"https://ror.org/04f0ydx59","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210145583"]},{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["RU","US"],"is_corresponding":true,"raw_author_name":"Patricia Maraver","raw_affiliation_strings":["Bioengineering Department; College of Engineering and Computing, George Mason University, Fairfax, VA, USA","Center for Neural Informatics, Structures, & Plasticity; Krasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA","Bioengineering Department","College of Engineering and Computing, George Mason University, Fairfax, VA, USA"],"affiliations":[{"raw_affiliation_string":"Bioengineering Department; College of Engineering and Computing, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631"]},{"raw_affiliation_string":"Center for Neural Informatics, Structures, & Plasticity; Krasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631"]},{"raw_affiliation_string":"Bioengineering Department","institution_ids":["https://openalex.org/I4210145583"]},{"raw_affiliation_string":"College of Engineering and Computing, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071544636","display_name":"Carolina Tecuatl","orcid":"https://orcid.org/0000-0001-6398-3444"},"institutions":[{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]},{"id":"https://openalex.org/I4210145583","display_name":"Bioengineering Center","ror":"https://ror.org/04f0ydx59","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210145583"]}],"countries":["RU","US"],"is_corresponding":false,"raw_author_name":"Carolina Tecuatl","raw_affiliation_strings":["Bioengineering Department; College of Engineering and Computing, George Mason University, Fairfax, VA, USA","Center for Neural Informatics, Structures, & Plasticity; Krasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA","Bioengineering Department","College of Engineering and Computing, George Mason University, Fairfax, VA, USA"],"affiliations":[{"raw_affiliation_string":"Bioengineering Department; College of Engineering and Computing, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631"]},{"raw_affiliation_string":"Center for Neural Informatics, Structures, & Plasticity; Krasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631"]},{"raw_affiliation_string":"Bioengineering Department","institution_ids":["https://openalex.org/I4210145583"]},{"raw_affiliation_string":"College of Engineering and Computing, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087672831","display_name":"Giorgio A. Ascoli","orcid":"https://orcid.org/0000-0002-0964-676X"},"institutions":[{"id":"https://openalex.org/I40036882","display_name":"Institute for Advanced Study","ror":"https://ror.org/00f809463","country_code":"US","type":"facility","lineage":["https://openalex.org/I40036882"]},{"id":"https://openalex.org/I162714631","display_name":"George Mason University","ror":"https://ror.org/02jqj7156","country_code":"US","type":"education","lineage":["https://openalex.org/I162714631"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Giorgio A. Ascoli","raw_affiliation_strings":["Bioengineering Department; College of Engineering and Computing, George Mason University, Fairfax, VA, USA. ascoli@gmu.edu","Center for Neural Informatics, Structures, & Plasticity; Krasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA. ascoli@gmu.edu","Krasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA","Center for Neural Informatics, Structures, & Plasticity"],"affiliations":[{"raw_affiliation_string":"Bioengineering Department; College of Engineering and Computing, George Mason University, Fairfax, VA, USA. ascoli@gmu.edu","institution_ids":["https://openalex.org/I162714631"]},{"raw_affiliation_string":"Center for Neural Informatics, Structures, & Plasticity; Krasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA. ascoli@gmu.edu","institution_ids":["https://openalex.org/I162714631"]},{"raw_affiliation_string":"Krasnow Institute for Advanced Study, George Mason University, Fairfax, VA, USA","institution_ids":["https://openalex.org/I162714631","https://openalex.org/I40036882"]},{"raw_affiliation_string":"Center for Neural Informatics, Structures, & Plasticity","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5057385529"],"corresponding_institution_ids":["https://openalex.org/I162714631","https://openalex.org/I4210145583"],"apc_list":{"value":790,"currency":"GBP","value_usd":969},"apc_paid":{"value":790,"currency":"GBP","value_usd":969},"fwci":0.7076,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.81629938,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"10","issue":"1","first_page":"23","last_page":"23"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9157999753952026,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9072999954223633,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6492574214935303},{"id":"https://openalex.org/keywords/morphology","display_name":"Morphology (biology)","score":0.5103775858879089},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4253450632095337},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39339232444763184},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3649265170097351},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.1381295919418335},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10945776104927063},{"id":"https://openalex.org/keywords/paleontology","display_name":"Paleontology","score":0.07503166794776917}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6492574214935303},{"id":"https://openalex.org/C499950583","wikidata":"https://www.wikidata.org/wiki/Q183252","display_name":"Morphology (biology)","level":2,"score":0.5103775858879089},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4253450632095337},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39339232444763184},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3649265170097351},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.1381295919418335},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10945776104927063},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.07503166794776917},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s40708-023-00202-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40708-023-00202-x","pdf_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-023-00202-x","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},{"id":"pmid:37684527","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37684527","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain informatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10491540","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10491540","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10491540/pdf/40708_2023_Article_202.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brain Inform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:a3c2509f89e2448499252814d444ad3e","is_oa":true,"landing_page_url":"https://doaj.org/article/a3c2509f89e2448499252814d444ad3e","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brain Informatics, Vol 10, Iss 1, Pp 1-11 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s40708-023-00202-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40708-023-00202-x","pdf_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-023-00202-x","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Decent work and economic growth","score":0.6399999856948853,"id":"https://metadata.un.org/sdg/8"}],"awards":[{"id":"https://openalex.org/G256142433","display_name":null,"funder_award_id":"MH114829","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3359890016","display_name":null,"funder_award_id":"NS39600","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3515618948","display_name":null,"funder_award_id":"U01MH114829","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4177482270","display_name":null,"funder_award_id":"R01NS086082","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5753608401","display_name":null,"funder_award_id":"R01NS39600","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8900822345","display_name":null,"funder_award_id":"NS086082","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4386552783.pdf"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W2043935419","https://openalex.org/W2061186544","https://openalex.org/W2062707524","https://openalex.org/W2091940856","https://openalex.org/W2094726706","https://openalex.org/W2114968414","https://openalex.org/W2252925835","https://openalex.org/W2546302380","https://openalex.org/W2583596256","https://openalex.org/W2602583424","https://openalex.org/W2606981059","https://openalex.org/W2789873027","https://openalex.org/W2884150790","https://openalex.org/W2887377515","https://openalex.org/W2915583118","https://openalex.org/W2919190028","https://openalex.org/W2933436187","https://openalex.org/W2936503027","https://openalex.org/W2941179688","https://openalex.org/W3013692235","https://openalex.org/W3017130159","https://openalex.org/W3119300086","https://openalex.org/W3123626380","https://openalex.org/W3161963266","https://openalex.org/W4225613566","https://openalex.org/W4250664506","https://openalex.org/W4280511273","https://openalex.org/W4301586056","https://openalex.org/W4307502375","https://openalex.org/W4308410749"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2033914206","https://openalex.org/W2042327336"],"abstract_inverted_index":{"The":[0,64,110,126],"increasing":[1],"number":[2,111],"of":[3,20,36,55,80,101,112],"peer-reviewed":[4],"publications":[5,82,103],"constitutes":[6],"a":[7,14,41,56],"challenge":[8],"for":[9,17,61],"biocuration.":[10],"For":[11],"example,":[12],"NeuroMorpho.Org,":[13],"sharing":[15],"platform":[16],"digital":[18],"reconstructions":[19],"neural":[21,72],"morphology,":[22],"must":[23],"evaluate":[24],"more":[25],"than":[26],"6000":[27],"potentially":[28],"relevant":[29,60],"articles":[30,68],"per":[31,83],"year":[32],"to":[33,51,58,90,106,135,140],"identify":[34],"data":[35],"interest.":[37],"Here,":[38],"we":[39],"describe":[40],"tool":[42,65,118,128],"that":[43],"uses":[44],"natural":[45],"language":[46],"processing":[47,78],"and":[48,133],"deep":[49],"learning":[50],"assess":[52],"the":[53,62,98,117],"likelihood":[54],"publication":[57],"be":[59],"project.":[63],"automatically":[66],"identifies":[67],"describing":[69],"digitally":[70],"reconstructed":[71],"morphologies":[73],"with":[74],"high":[75],"accuracy.":[76],"Its":[77],"rate":[79],"900":[81],"hour":[84],"is":[85,129],"not":[86],"only":[87],"amply":[88],"sufficient":[89],"autonomously":[91],"track":[92],"new":[93],"research,":[94],"but":[95],"also":[96],"allowed":[97],"successful":[99],"evaluation":[100],"older":[102],"backlogged":[104],"due":[105],"limited":[107],"human":[108],"resources.":[109],"bio-entities":[113],"found":[114],"since":[115],"launching":[116],"almost":[119],"doubled":[120],"while":[121],"greatly":[122],"reducing":[123],"manual":[124],"labor.":[125],"classification":[127],"open":[130],"source,":[131],"configurable,":[132],"simple":[134],"use,":[136],"making":[137],"it":[138],"extensible":[139],"other":[141],"biocuration":[142],"projects.":[143]},"counts_by_year":[{"year":2024,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
