{"id":"https://openalex.org/W4362704149","doi":"https://doi.org/10.1186/s40708-023-00189-5","title":"Quantifying numerical and spatial reliability of hippocampal and amygdala subdivisions in FreeSurfer","display_name":"Quantifying numerical and spatial reliability of hippocampal and amygdala subdivisions in FreeSurfer","publication_year":2023,"publication_date":"2023-04-07","ids":{"openalex":"https://openalex.org/W4362704149","doi":"https://doi.org/10.1186/s40708-023-00189-5","pmid":"https://pubmed.ncbi.nlm.nih.gov/37029203"},"language":"en","primary_location":{"id":"doi:10.1186/s40708-023-00189-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40708-023-00189-5","pdf_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-023-00189-5","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-023-00189-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063914249","display_name":"Isabella Kahhal\u00e9","orcid":"https://orcid.org/0000-0002-0963-9738"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Isabella Kahhale","raw_affiliation_strings":["University of Pittsburgh, Pittsburgh, PA, USA"],"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021253819","display_name":"Nicholas J. Buser","orcid":"https://orcid.org/0000-0002-0116-2533"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas J. Buser","raw_affiliation_strings":["University of Pittsburgh, Pittsburgh, PA, USA"],"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020772022","display_name":"Christopher R. Madan","orcid":"https://orcid.org/0000-0003-3228-6501"},"institutions":[{"id":"https://openalex.org/I142263535","display_name":"University of Nottingham","ror":"https://ror.org/01ee9ar58","country_code":"GB","type":"education","lineage":["https://openalex.org/I142263535"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christopher R. Madan","raw_affiliation_strings":["University of Nottingham, Nottingham, UK"],"affiliations":[{"raw_affiliation_string":"University of Nottingham, Nottingham, UK","institution_ids":["https://openalex.org/I142263535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048158896","display_name":"Jamie L. Hanson","orcid":"https://orcid.org/0000-0002-0469-8886"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jamie L. Hanson","raw_affiliation_strings":["University of Pittsburgh, Pittsburgh, PA, USA. jamie.hanson@pitt.edu","University of Pittsburgh, Pittsburgh, PA, USA"],"affiliations":[{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, PA, USA. jamie.hanson@pitt.edu","institution_ids":[]},{"raw_affiliation_string":"University of Pittsburgh, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5063914249"],"corresponding_institution_ids":["https://openalex.org/I170201317"],"apc_list":{"value":790,"currency":"GBP","value_usd":969},"apc_paid":{"value":790,"currency":"GBP","value_usd":969},"fwci":4.8774,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.95991011,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"10","issue":"1","first_page":"9","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10581","display_name":"Neural dynamics and brain function","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10448","display_name":"Memory and Neural Mechanisms","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hippocampal-formation","display_name":"Hippocampal formation","score":0.7110203504562378},{"id":"https://openalex.org/keywords/amygdala","display_name":"Amygdala","score":0.632788896560669},{"id":"https://openalex.org/keywords/reliability","display_name":"Reliability (semiconductor)","score":0.528988242149353},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.5131979584693909},{"id":"https://openalex.org/keywords/hippocampus","display_name":"Hippocampus","score":0.5108201503753662},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.36832404136657715},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.31428807973861694},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1733686923980713}],"concepts":[{"id":"https://openalex.org/C148762608","wikidata":"https://www.wikidata.org/wiki/Q3748185","display_name":"Hippocampal formation","level":2,"score":0.7110203504562378},{"id":"https://openalex.org/C2779144063","wikidata":"https://www.wikidata.org/wiki/Q338924","display_name":"Amygdala","level":2,"score":0.632788896560669},{"id":"https://openalex.org/C43214815","wikidata":"https://www.wikidata.org/wiki/Q7310987","display_name":"Reliability (semiconductor)","level":3,"score":0.528988242149353},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.5131979584693909},{"id":"https://openalex.org/C2781161787","wikidata":"https://www.wikidata.org/wiki/Q48360","display_name":"Hippocampus","level":2,"score":0.5108201503753662},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.36832404136657715},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.31428807973861694},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1733686923980713},{"id":"https://openalex.org/C163258240","wikidata":"https://www.wikidata.org/wiki/Q25342","display_name":"Power (physics)","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s40708-023-00189-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40708-023-00189-5","pdf_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-023-00189-5","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},{"id":"pmid:37029203","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37029203","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain informatics","raw_type":null},{"id":"pmh:oai:nottingham-repository.worktribe.com:19454522","is_oa":true,"landing_page_url":"https://nottingham-repository.worktribe.com/output/19454522","pdf_url":"https://nottingham-repository.worktribe.com/file/19454522/1/s40708-023-00189-5","source":{"id":"https://openalex.org/S4306402483","display_name":"Repository@Nottingham (University of Nottingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I142263535","host_organization_name":"University of Nottingham","host_organization_lineage":["https://openalex.org/I142263535"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:10082143","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10082143","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10082143/pdf/40708_2023_Article_189.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brain Inform","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:4948eaa682764660868aac3fe1ca13ef","is_oa":true,"landing_page_url":"https://doaj.org/article/4948eaa682764660868aac3fe1ca13ef","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brain Informatics, Vol 10, Iss 1, Pp 1-18 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s40708-023-00189-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40708-023-00189-5","pdf_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-023-00189-5","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"No poverty","id":"https://metadata.un.org/sdg/1","score":0.7599999904632568}],"awards":[{"id":"https://openalex.org/G2525627679","display_name":null,"funder_award_id":"BCS-1734853","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4562372863","display_name":null,"funder_award_id":"IIS-1912270","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4742160287","display_name":null,"funder_award_id":"1912270","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G836630860","display_name":null,"funder_award_id":"IIS-1636893","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8446028771","display_name":null,"funder_award_id":"1734853","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320310174","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305"},{"id":"https://openalex.org/F4320310620","display_name":"University of Texas at Austin","ror":"https://ror.org/00hj54h04"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4362704149.pdf"},"referenced_works_count":88,"referenced_works":["https://openalex.org/W954230352","https://openalex.org/W1566415063","https://openalex.org/W1907233035","https://openalex.org/W1971662253","https://openalex.org/W1990792527","https://openalex.org/W1993947467","https://openalex.org/W2000428819","https://openalex.org/W2001676187","https://openalex.org/W2004293194","https://openalex.org/W2008106418","https://openalex.org/W2015227273","https://openalex.org/W2029913622","https://openalex.org/W2052318063","https://openalex.org/W2054732019","https://openalex.org/W2058397180","https://openalex.org/W2063085086","https://openalex.org/W2067145795","https://openalex.org/W2067724039","https://openalex.org/W2067774627","https://openalex.org/W2073206710","https://openalex.org/W2078524519","https://openalex.org/W2084443965","https://openalex.org/W2089017079","https://openalex.org/W2089059900","https://openalex.org/W2091845323","https://openalex.org/W2093925183","https://openalex.org/W2097864095","https://openalex.org/W2102033269","https://openalex.org/W2103481737","https://openalex.org/W2104637120","https://openalex.org/W2106106014","https://openalex.org/W2107516821","https://openalex.org/W2108412665","https://openalex.org/W2110437310","https://openalex.org/W2113319997","https://openalex.org/W2117140276","https://openalex.org/W2117959021","https://openalex.org/W2120032880","https://openalex.org/W2121369614","https://openalex.org/W2125375538","https://openalex.org/W2129047299","https://openalex.org/W2129253531","https://openalex.org/W2129574992","https://openalex.org/W2132513126","https://openalex.org/W2138101541","https://openalex.org/W2139886607","https://openalex.org/W2142903958","https://openalex.org/W2151721316","https://openalex.org/W2157270343","https://openalex.org/W2157885417","https://openalex.org/W2159772210","https://openalex.org/W2161144725","https://openalex.org/W2165570456","https://openalex.org/W2167868121","https://openalex.org/W2170071464","https://openalex.org/W2213781658","https://openalex.org/W2274252588","https://openalex.org/W2327037637","https://openalex.org/W2487103609","https://openalex.org/W2516395101","https://openalex.org/W2517175011","https://openalex.org/W2539685118","https://openalex.org/W2559813826","https://openalex.org/W2570276620","https://openalex.org/W2591922411","https://openalex.org/W2611096323","https://openalex.org/W2745419144","https://openalex.org/W2772371211","https://openalex.org/W2776686071","https://openalex.org/W2783797800","https://openalex.org/W2802071754","https://openalex.org/W2902974746","https://openalex.org/W2942968229","https://openalex.org/W2946239819","https://openalex.org/W2948927035","https://openalex.org/W2950001420","https://openalex.org/W2950613646","https://openalex.org/W2995750352","https://openalex.org/W3001520180","https://openalex.org/W3025427190","https://openalex.org/W3093158055","https://openalex.org/W3112084228","https://openalex.org/W3139408336","https://openalex.org/W3156232532","https://openalex.org/W3161481128","https://openalex.org/W4241074797","https://openalex.org/W4310030124","https://openalex.org/W6931504492"],"related_works":["https://openalex.org/W2413922126","https://openalex.org/W2090370544","https://openalex.org/W2076813149","https://openalex.org/W197414524","https://openalex.org/W2467418326","https://openalex.org/W1870728998","https://openalex.org/W2391750868","https://openalex.org/W17166845","https://openalex.org/W2061706623","https://openalex.org/W4385683675"],"abstract_inverted_index":{"On-going,":[0],"large-scale":[1],"neuroimaging":[2],"initiatives":[3],"can":[4],"aid":[5],"in":[6,26,71,175],"uncovering":[7],"neurobiological":[8],"causes":[9],"and":[10,18,35,57,68,130,156,167,193],"correlates":[11],"of":[12,32,39,65,77,101,114,123,127,132],"poor":[13,144],"mental":[14],"health,":[15],"disease":[16],"pathology,":[17],"many":[19],"other":[20],"important":[21],"conditions.":[22],"As":[23],"projects":[24],"grow":[25],"scale":[27],"with":[28,79,196],"hundreds,":[29],"even":[30],"thousands,":[31],"individual":[33],"participants":[34,78],"scans":[36,83],"collected,":[37],"quantification":[38],"brain":[40],"structures":[41],"by":[42,93],"automated":[43,63],"algorithms":[44],"is":[45],"becoming":[46],"the":[47,55],"only":[48,112],"truly":[49],"tractable":[50],"approach.":[51],"Here,":[52],"we":[53,87],"assessed":[54,92],"spatial":[56,124,147,154,176],"numerical":[58,89,106,145],"reliability":[59,90,107,155,177],"for":[60,188],"newly":[61],"deployed":[62],"segmentation":[64],"hippocampal":[66,102,128,191],"subfields":[67,103,129,192],"amygdala":[69,115,133,194],"nuclei":[70,195],"FreeSurfer":[72],"7.":[73],"In":[74,121],"a":[75,189],"sample":[76],"repeated":[80],"structural":[81],"imaging":[82],"(N":[84],"=":[85],"928),":[86],"found":[88],"(as":[91],"intraclass":[94],"correlations,":[95],"ICCs)":[96],"was":[97],"reasonable.":[98],"Approximately":[99],"95%":[100],"had":[104,135,143],"\"excellent\"":[105],"(ICCs":[108],"\u2265":[109,138],"0.90),":[110],"while":[111],"67%":[113],"subnuclei":[116,134],"met":[117],"this":[118],"same":[119],"threshold.":[120],"terms":[122],"reliability,":[125],"58%":[126],"44%":[131],"Dice":[136],"coefficients":[137],"0.70.":[139],"Notably,":[140],"multiple":[141],"regions":[142],"and/or":[146],"reliability.":[148,199],"We":[149],"also":[150],"examined":[151],"correlations":[152],"between":[153],"person-level":[157],"factors":[158],"(e.g.,":[159],"participant":[160],"age;":[161],"T1":[162],"image":[163,168],"quality).":[164],"Both":[165],"sex":[166],"scan":[169],"quality":[170],"were":[171],"related":[172],"to":[173],"variations":[174],"metrics.":[178],"Examined":[179],"collectively,":[180],"our":[181],"work":[182],"suggests":[183],"caution":[184],"should":[185],"be":[186],"exercised":[187],"few":[190],"more":[197],"variable":[198]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}