{"id":"https://openalex.org/W4289783543","doi":"https://doi.org/10.1186/s40708-022-00166-4","title":"SmaRT2P: a software for generating and processing smart line recording trajectories for population two-photon calcium imaging","display_name":"SmaRT2P: a software for generating and processing smart line recording trajectories for population two-photon calcium imaging","publication_year":2022,"publication_date":"2022-08-04","ids":{"openalex":"https://openalex.org/W4289783543","doi":"https://doi.org/10.1186/s40708-022-00166-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/35927517"},"language":"en","primary_location":{"id":"doi:10.1186/s40708-022-00166-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40708-022-00166-4","pdf_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-022-00166-4","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-022-00166-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047767005","display_name":"Monica Moroni","orcid":"https://orcid.org/0000-0003-1852-7217"},"institutions":[{"id":"https://openalex.org/I4210127676","display_name":"Center for Neuroscience and Cognitive Systems","ror":"https://ror.org/045yf0774","country_code":"IT","type":"facility","lineage":["https://openalex.org/I30771326","https://openalex.org/I4210127676"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Monica Moroni","raw_affiliation_strings":["Neural Computation Laboratory, Center for Neuroscience and Cognitive Systems, UniTn, Istituto Italiano Di Tecnologia, 38068, Rovereto, Italy. monica.moroni@outlook.com","Neural Computation Laboratory, Center for Neuroscience and Cognitive Systems, UniTn, Istituto Italiano Di Tecnologia, 38068, Rovereto, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neural Computation Laboratory, Center for Neuroscience and Cognitive Systems, UniTn, Istituto Italiano Di Tecnologia, 38068, Rovereto, Italy. monica.moroni@outlook.com","institution_ids":["https://openalex.org/I4210127676"]},{"raw_affiliation_string":"Neural Computation Laboratory, Center for Neuroscience and Cognitive Systems, UniTn, Istituto Italiano Di Tecnologia, 38068, Rovereto, Italy","institution_ids":["https://openalex.org/I4210127676"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035734765","display_name":"Marco Brondi","orcid":"https://orcid.org/0000-0002-3464-0095"},"institutions":[{"id":"https://openalex.org/I138689650","display_name":"University of Padua","ror":"https://ror.org/00240q980","country_code":"IT","type":"education","lineage":["https://openalex.org/I138689650"]},{"id":"https://openalex.org/I30771326","display_name":"Italian Institute of Technology","ror":"https://ror.org/042t93s57","country_code":"IT","type":"facility","lineage":["https://openalex.org/I30771326"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Brondi","raw_affiliation_strings":["Department of Biomedical Sciences-UNIPD, Universit\u00e0 Degli Studi Di Padova, 35121, Padua, Italy","Optical Approaches to Brain Function Laboratory, Istituto Italiano Di Tecnologia, 16163, Genoa, Italy","Padova Neuroscience Center (PNC), Universit\u00e0 Degli Studi Di Padova, 35129, Padua, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Sciences-UNIPD, Universit\u00e0 Degli Studi Di Padova, 35121, Padua, Italy","institution_ids":["https://openalex.org/I138689650"]},{"raw_affiliation_string":"Optical Approaches to Brain Function Laboratory, Istituto Italiano Di Tecnologia, 16163, Genoa, Italy","institution_ids":["https://openalex.org/I30771326"]},{"raw_affiliation_string":"Padova Neuroscience Center (PNC), Universit\u00e0 Degli Studi Di Padova, 35129, Padua, Italy","institution_ids":["https://openalex.org/I138689650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032412662","display_name":"Tommaso Fellin","orcid":"https://orcid.org/0000-0003-2718-7533"},"institutions":[{"id":"https://openalex.org/I30771326","display_name":"Italian Institute of Technology","ror":"https://ror.org/042t93s57","country_code":"IT","type":"facility","lineage":["https://openalex.org/I30771326"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Tommaso Fellin","raw_affiliation_strings":["Optical Approaches to Brain Function Laboratory, Istituto Italiano Di Tecnologia, 16163, Genoa, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Optical Approaches to Brain Function Laboratory, Istituto Italiano Di Tecnologia, 16163, Genoa, Italy","institution_ids":["https://openalex.org/I30771326"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014847103","display_name":"Stefano Panzeri","orcid":"https://orcid.org/0000-0003-1700-8909"},"institutions":[{"id":"https://openalex.org/I159176309","display_name":"Universit\u00e4t Hamburg","ror":"https://ror.org/00g30e956","country_code":"DE","type":"education","lineage":["https://openalex.org/I159176309"]},{"id":"https://openalex.org/I4210108711","display_name":"University Medical Center Hamburg-Eppendorf","ror":"https://ror.org/01zgy1s35","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I159176309","https://openalex.org/I4210108711"]},{"id":"https://openalex.org/I4210127676","display_name":"Center for Neuroscience and Cognitive Systems","ror":"https://ror.org/045yf0774","country_code":"IT","type":"facility","lineage":["https://openalex.org/I30771326","https://openalex.org/I4210127676"]}],"countries":["DE","IT"],"is_corresponding":true,"raw_author_name":"Stefano Panzeri","raw_affiliation_strings":["Department of Excellence for Neural Information Processing, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf (UKE), 20251, Hamburg, Germany. s.panzeri@uke.de","Neural Computation Laboratory, Center for Neuroscience and Cognitive Systems, UniTn, Istituto Italiano Di Tecnologia, 38068, Rovereto, Italy. s.panzeri@uke.de","Neural Computation Laboratory, Center for Neuroscience and Cognitive Systems, UniTn, Istituto Italiano Di Tecnologia, 38068, Rovereto, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Excellence for Neural Information Processing, Center for Molecular Neurobiology (ZMNH), University Medical Center Hamburg-Eppendorf (UKE), 20251, Hamburg, Germany. s.panzeri@uke.de","institution_ids":["https://openalex.org/I159176309","https://openalex.org/I4210108711"]},{"raw_affiliation_string":"Neural Computation Laboratory, Center for Neuroscience and Cognitive Systems, UniTn, Istituto Italiano Di Tecnologia, 38068, Rovereto, Italy. s.panzeri@uke.de","institution_ids":["https://openalex.org/I4210127676"]},{"raw_affiliation_string":"Neural Computation Laboratory, Center for Neuroscience and Cognitive Systems, UniTn, Istituto Italiano Di Tecnologia, 38068, Rovereto, Italy","institution_ids":["https://openalex.org/I4210127676"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5014847103","https://openalex.org/A5047767005"],"corresponding_institution_ids":["https://openalex.org/I159176309","https://openalex.org/I4210108711","https://openalex.org/I4210127676"],"apc_list":{"value":790,"currency":"GBP","value_usd":969},"apc_paid":{"value":790,"currency":"GBP","value_usd":969},"fwci":0.4845,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.76528354,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"9","issue":"1","first_page":"18","last_page":"18"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10691","display_name":"Retinal Development and Disorders","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12561","display_name":"bioluminescence and chemiluminescence research","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/calcium-imaging","display_name":"Calcium imaging","score":0.704227089881897},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5898538827896118},{"id":"https://openalex.org/keywords/line","display_name":"Line (geometry)","score":0.5003998279571533},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4727645516395569},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4366914927959442},{"id":"https://openalex.org/keywords/calcium","display_name":"Calcium","score":0.38816970586776733},{"id":"https://openalex.org/keywords/nuclear-magnetic-resonance","display_name":"Nuclear magnetic resonance","score":0.35046806931495667},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.33357149362564087},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.29881298542022705},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16064435243606567},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.13277822732925415}],"concepts":[{"id":"https://openalex.org/C2776032975","wikidata":"https://www.wikidata.org/wiki/Q5018833","display_name":"Calcium imaging","level":3,"score":0.704227089881897},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5898538827896118},{"id":"https://openalex.org/C198352243","wikidata":"https://www.wikidata.org/wiki/Q37105","display_name":"Line (geometry)","level":2,"score":0.5003998279571533},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4727645516395569},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4366914927959442},{"id":"https://openalex.org/C519063684","wikidata":"https://www.wikidata.org/wiki/Q706","display_name":"Calcium","level":2,"score":0.38816970586776733},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.35046806931495667},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.33357149362564087},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.29881298542022705},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16064435243606567},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.13277822732925415},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1186/s40708-022-00166-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40708-022-00166-4","pdf_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-022-00166-4","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},{"id":"pmid:35927517","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35927517","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain informatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:867f9f37a9c948b8a7b66bb2fa7bf453","is_oa":true,"landing_page_url":"https://doaj.org/article/867f9f37a9c948b8a7b66bb2fa7bf453","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brain Informatics, Vol 9, Iss 1, Pp 1-19 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9352634","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9352634","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Brain Inform","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s40708-022-00166-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40708-022-00166-4","pdf_url":"https://braininformatics.springeropen.com/counter/pdf/10.1186/s40708-022-00166-4","source":{"id":"https://openalex.org/S2498492389","display_name":"Brain Informatics","issn_l":"2198-4018","issn":["2198-4018","2198-4026"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Brain Informatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2724681169","display_name":null,"funder_award_id":"945539","funder_id":"https://openalex.org/F4320337662","funder_display_name":"H2020 Excellent Science"},{"id":"https://openalex.org/G5066920302","display_name":null,"funder_award_id":"U19 NS107464","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G6783654672","display_name":null,"funder_award_id":"NS107464","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"},{"id":"https://openalex.org/F4320337662","display_name":"H2020 Excellent Science","ror":null},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4289783543.pdf","grobid_xml":"https://content.openalex.org/works/W4289783543.grobid-xml"},"referenced_works_count":77,"referenced_works":["https://openalex.org/W648226467","https://openalex.org/W1993355218","https://openalex.org/W1994572841","https://openalex.org/W1995360097","https://openalex.org/W2004900646","https://openalex.org/W2011973215","https://openalex.org/W2019601442","https://openalex.org/W2022800322","https://openalex.org/W2030913473","https://openalex.org/W2044286534","https://openalex.org/W2057755912","https://openalex.org/W2062619493","https://openalex.org/W2067003767","https://openalex.org/W2067474937","https://openalex.org/W2067732678","https://openalex.org/W2069024107","https://openalex.org/W2074967846","https://openalex.org/W2076464479","https://openalex.org/W2079785206","https://openalex.org/W2081321639","https://openalex.org/W2094045132","https://openalex.org/W2099540110","https://openalex.org/W2105875129","https://openalex.org/W2106924853","https://openalex.org/W2118128164","https://openalex.org/W2121071682","https://openalex.org/W2127388521","https://openalex.org/W2144494088","https://openalex.org/W2147607085","https://openalex.org/W2150236487","https://openalex.org/W2167279371","https://openalex.org/W2171332611","https://openalex.org/W2231009150","https://openalex.org/W2303815889","https://openalex.org/W2469581795","https://openalex.org/W2502163955","https://openalex.org/W2508029759","https://openalex.org/W2512047842","https://openalex.org/W2547554208","https://openalex.org/W2595012769","https://openalex.org/W2614257994","https://openalex.org/W2622256805","https://openalex.org/W2732612903","https://openalex.org/W2737137727","https://openalex.org/W2743961201","https://openalex.org/W2745070225","https://openalex.org/W2747228919","https://openalex.org/W2768956845","https://openalex.org/W2785016696","https://openalex.org/W2794648976","https://openalex.org/W2805271873","https://openalex.org/W2889718262","https://openalex.org/W2919574227","https://openalex.org/W2936929958","https://openalex.org/W2937274403","https://openalex.org/W2940115943","https://openalex.org/W2949620450","https://openalex.org/W2950205567","https://openalex.org/W2950569309","https://openalex.org/W2950849463","https://openalex.org/W2955564464","https://openalex.org/W3008539609","https://openalex.org/W3011209639","https://openalex.org/W3025414101","https://openalex.org/W3035963907","https://openalex.org/W3080647613","https://openalex.org/W3095668735","https://openalex.org/W3105014772","https://openalex.org/W3121212723","https://openalex.org/W3133698431","https://openalex.org/W3162417332","https://openalex.org/W3164365580","https://openalex.org/W4206792024","https://openalex.org/W4221025960","https://openalex.org/W4253268830","https://openalex.org/W4283364078","https://openalex.org/W6945190431"],"related_works":["https://openalex.org/W1499732058","https://openalex.org/W2048213734","https://openalex.org/W1989673413","https://openalex.org/W1568635045","https://openalex.org/W4226087776","https://openalex.org/W2371794589","https://openalex.org/W2315373624","https://openalex.org/W1967736413","https://openalex.org/W2140812068","https://openalex.org/W2442410633"],"abstract_inverted_index":{"Two-photon":[0],"fluorescence":[1,66],"calcium":[2,138],"imaging":[3,77,139],"allows":[4],"recording":[5,90],"the":[6,58,64,69,186,205,209,223],"activity":[7],"of":[8,39,60,71,198,212,225],"large":[9,37,213],"neural":[10],"populations":[11,215],"with":[12,93,110,146,216],"subcellular":[13],"spatial":[14],"resolution,":[15],"but":[16],"it":[17],"is":[18,142,176],"typically":[19],"characterized":[20],"by":[21],"low":[22],"signal-to-noise":[23],"ratio":[24],"(SNR)":[25],"and":[26,68,96,113,119,125,152,163,219,227],"poor":[27],"accuracy":[28,70,220],"in":[29,75,78,136,178,185,193,221],"detecting":[30,222],"single":[31,72,226],"or":[32],"few":[33,228],"action":[34,229],"potentials":[35],"when":[36],"number":[38],"neurons":[40],"are":[41],"imaged.":[42],"We":[43],"recently":[44],"showed":[45],"that":[46,55],"implementing":[47],"a":[48,179],"smart":[49,81,102,133,201],"line":[50,82,103,134,202],"scanning":[51,83,104,135,203],"approach":[52],"using":[53],"trajectories":[54],"optimally":[56],"sample":[57],"regions":[59],"interest":[61],"increases":[62],"both":[63],"SNR":[65,218],"signals":[67,169],"spike":[73],"detection":[74],"population":[76,173],"vivo.":[79],"However,":[80],"requires":[84],"highly":[85],"specialised":[86],"software":[87,128,149],"to":[88,108,130,144,156,182,207],"design":[89],"trajectories,":[91],"interface":[92,145],"acquisition":[94,148],"hardware,":[95],"efficiently":[97],"process":[98],"acquired":[99],"data.":[100],"Furthermore,":[101],"needs":[105],"optimized":[106,132],"strategies":[107,155],"cope":[109],"movement":[111],"artefacts":[112],"neuropil":[114,161],"contamination.":[115],"Here,":[116],"we":[117],"develop":[118],"validate":[120],"SmaRT2P,":[121],"an":[122],"open-source,":[123],"user-friendly":[124],"easy-to-interface":[126],"Matlab-based":[127],"environment":[129],"perform":[131],"two-photon":[137],"experiments.":[140],"SmaRT2P":[141,175,199],"designed":[143],"popular":[147],"(e.g.,":[150],"ScanImage)":[151],"implements":[153],"novel":[154],"detect":[157],"motion":[158],"artefacts,":[159],"estimate":[160],"contamination,":[162],"minimize":[164],"their":[165],"impact":[166],"on":[167],"functional":[168,210],"extracted":[170],"from":[171],"neuronal":[172,214],"imaging.":[174],"structured":[177],"modular":[180],"way":[181],"allow":[183],"flexibility":[184],"processing":[187],"pipeline,":[188],"requiring":[189],"minimal":[190],"user":[191],"intervention":[192],"parameter":[194],"setting.":[195],"The":[196],"use":[197],"for":[200],"has":[204],"potential":[206],"facilitate":[208],"investigation":[211],"increased":[217],"discharge":[224],"potentials.":[230]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
