{"id":"https://openalex.org/W4407279068","doi":"https://doi.org/10.1186/s40537-024-01047-9","title":"A GDPR-compliant solution for analysis of large-scale genomics datasets on HPC cloud infrastructure","display_name":"A GDPR-compliant solution for analysis of large-scale genomics datasets on HPC cloud infrastructure","publication_year":2025,"publication_date":"2025-02-09","ids":{"openalex":"https://openalex.org/W4407279068","doi":"https://doi.org/10.1186/s40537-024-01047-9"},"language":"en","primary_location":{"id":"doi:10.1186/s40537-024-01047-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-024-01047-9","pdf_url":"https://link.springer.com/content/pdf/10.1186/s40537-024-01047-9.pdf","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s40537-024-01047-9.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015232893","display_name":"Silvia Gioiosa","orcid":"https://orcid.org/0000-0003-1302-8320"},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Silvia Gioiosa","raw_affiliation_strings":["HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy","institution_ids":["https://openalex.org/I4210119786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025698847","display_name":"Beatrice Chiavarini","orcid":"https://orcid.org/0000-0002-0530-309X"},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Beatrice Chiavarini","raw_affiliation_strings":["HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy","institution_ids":["https://openalex.org/I4210119786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049391887","display_name":"Mattia D\u2019Antonio","orcid":"https://orcid.org/0000-0003-2470-9797"},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Mattia D\u2019Antonio","raw_affiliation_strings":["HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy","institution_ids":["https://openalex.org/I4210119786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005164071","display_name":"Giuseppe Trotta","orcid":"https://orcid.org/0000-0002-6603-9106"},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppe Trotta","raw_affiliation_strings":["HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy","institution_ids":["https://openalex.org/I4210119786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055726071","display_name":"Balasubramanian Chandramouli","orcid":"https://orcid.org/0000-0002-6837-4709"},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Balasubramanian Chandramouli","raw_affiliation_strings":["HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy","institution_ids":["https://openalex.org/I4210119786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022703430","display_name":"Juan Mata Naranjo","orcid":"https://orcid.org/0009-0006-2113-4560"},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Juan Mata Naranjo","raw_affiliation_strings":["HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy","institution_ids":["https://openalex.org/I4210119786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082177477","display_name":"Giuseppa Muscianisi","orcid":"https://orcid.org/0000-0003-4108-395X"},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppa Muscianisi","raw_affiliation_strings":["HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy","institution_ids":["https://openalex.org/I4210119786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004690941","display_name":"Mirko Cestari","orcid":"https://orcid.org/0000-0002-6291-9720"},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Mirko Cestari","raw_affiliation_strings":["HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy","institution_ids":["https://openalex.org/I4210119786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050858475","display_name":"Elisa Rossi","orcid":"https://orcid.org/0000-0001-5767-7256"},"institutions":[{"id":"https://openalex.org/I4210119786","display_name":"Cineca","ror":"https://ror.org/02f013h18","country_code":"IT","type":"other","lineage":["https://openalex.org/I4210119786"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Elisa Rossi","raw_affiliation_strings":["HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"HPC High Performance Computing Department, CINECA, Casalecchio di Reno, Italy","institution_ids":["https://openalex.org/I4210119786"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5015232893"],"corresponding_institution_ids":["https://openalex.org/I4210119786"],"apc_list":{"value":1060,"currency":"GBP","value_usd":1300},"apc_paid":{"value":1060,"currency":"GBP","value_usd":1300},"fwci":1.3955,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.78431689,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"12","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14347","display_name":"Big Data and Digital Economy","score":0.9797000288963318,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.972599983215332,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.8254141807556152},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7992592453956604},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.6048452854156494},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4401613771915436},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.43426963686943054},{"id":"https://openalex.org/keywords/computational-science-and-engineering","display_name":"Computational Science and Engineering","score":0.42601096630096436},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.33078253269195557},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.2845653295516968},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.21643143892288208}],"concepts":[{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.8254141807556152},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7992592453956604},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.6048452854156494},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4401613771915436},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.43426963686943054},{"id":"https://openalex.org/C68597687","wikidata":"https://www.wikidata.org/wiki/Q362601","display_name":"Computational Science and Engineering","level":2,"score":0.42601096630096436},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.33078253269195557},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.2845653295516968},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.21643143892288208},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/s40537-024-01047-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-024-01047-9","pdf_url":"https://link.springer.com/content/pdf/10.1186/s40537-024-01047-9.pdf","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:20f5ad0ffaff405cb659e3dbf24aee5f","is_oa":true,"landing_page_url":"https://doaj.org/article/20f5ad0ffaff405cb659e3dbf24aee5f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Big Data, Vol 12, Iss 1, Pp 1-16 (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s40537-024-01047-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-024-01047-9","pdf_url":"https://link.springer.com/content/pdf/10.1186/s40537-024-01047-9.pdf","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4407279068.pdf","grobid_xml":"https://content.openalex.org/works/W4407279068.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1479918017","https://openalex.org/W1907868928","https://openalex.org/W1919257374","https://openalex.org/W1980132682","https://openalex.org/W1984068087","https://openalex.org/W2018838463","https://openalex.org/W2038473742","https://openalex.org/W2040228409","https://openalex.org/W2049081061","https://openalex.org/W2051643755","https://openalex.org/W2080406530","https://openalex.org/W2087588809","https://openalex.org/W2096435507","https://openalex.org/W2104549677","https://openalex.org/W2104846587","https://openalex.org/W2110417468","https://openalex.org/W2116868464","https://openalex.org/W2151372451","https://openalex.org/W2154866190","https://openalex.org/W2168133698","https://openalex.org/W2259938310","https://openalex.org/W2286816102","https://openalex.org/W2302501749","https://openalex.org/W2417483443","https://openalex.org/W2525873504","https://openalex.org/W2566134098","https://openalex.org/W2768112689","https://openalex.org/W2785694006","https://openalex.org/W2795680056","https://openalex.org/W2802548157","https://openalex.org/W2898789672","https://openalex.org/W2905452503","https://openalex.org/W2909194804","https://openalex.org/W2946488372","https://openalex.org/W2972056595","https://openalex.org/W3014080287","https://openalex.org/W3107322429","https://openalex.org/W3122109253","https://openalex.org/W3216782976","https://openalex.org/W4220976523","https://openalex.org/W4315490163","https://openalex.org/W4378907379"],"related_works":["https://openalex.org/W2384867379","https://openalex.org/W4400094300","https://openalex.org/W2329539859","https://openalex.org/W2227905990","https://openalex.org/W2765823764","https://openalex.org/W3214280620","https://openalex.org/W3191490922","https://openalex.org/W2794038527","https://openalex.org/W2327638088","https://openalex.org/W2151092287"],"abstract_inverted_index":{"This":[0,148],"paper":[1],"outlines":[2],"the":[3,10,29,49,60,130,155],"technical":[4],"and":[5,19,112,146,166],"organizational":[6],"measures":[7],"implemented":[8],"by":[9],"Italian":[11,158],"supercomputing":[12],"center,":[13],"CINECA,":[14],"to":[15,68,82,98,129,154,163],"efficiently":[16],"collect,":[17],"process,":[18],"store":[20],"sensitive-omics":[21],"data":[22,44,116,122,127,144],"in":[23,35,169],"compliance":[24],"with":[25,59,138,173],"GDPR":[26],"regulations.":[27],"Indeed,":[28],"explosion":[30],"of":[31,51,55,62,76,92,115],"High":[32,99],"Throughput":[33],"Sequencing":[34],"medicine":[36],"has":[37,150],"raised":[38],"tremendous":[39],"opportunities":[40],"for":[41,110,157],"large-scale":[42],"genomic":[43,121,175],"analysis.":[45],"Cohort":[46],"studies":[47],"involving":[48],"processing":[50],"hundreds":[52],"or":[53,102],"thousands":[54],"input":[56],"samples,":[57],"combined":[58],"integration":[61],"diverse":[63],"diagnostic":[64],"data,":[65,93],"enable":[66],"researchers":[67],"conduct":[69],"integrative":[70],"analyses":[71],"at":[72],"an":[73],"unprecedented":[74],"level":[75],"detail":[77],"would":[78],"have":[79,96,106],"been":[80,151],"impossible":[81],"achieve":[83],"through":[84],"single":[85],"sample":[86],"studies.":[87],"To":[88],"analyse":[89],"such":[90],"amount":[91],"centres":[94,137],"that":[95],"access":[97],"Performance":[100],"Computing":[101],"extensive":[103],"cloud":[104],"resources":[105],"become":[107],"crucial":[108],"both":[109],"storage":[111],"efficient":[113],"execution":[114],"analysis":[117],"pipelines.":[118],"Nevertheless,":[119],"since":[120],"are":[123],"considered":[124],"sensitive":[125,174],"personal":[126],"according":[128],"EU":[131],"General":[132],"Data":[133],"Protection":[134],"Regulation,":[135],"computational":[136],"high":[139],"resource":[140],"capabilities":[141],"must":[142],"prioritize":[143],"security":[145],"protection.":[147],"solution":[149],"successfully":[152],"applied":[153],"Network":[156],"Genomes":[159],"use-case,":[160],"demonstrating":[161],"scalability":[162],"other":[164],"hospitals":[165],"universities":[167],"involved":[168],"research":[170],"projects":[171],"dealing":[172],"data.":[176]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1}],"updated_date":"2026-04-30T09:15:22.047038","created_date":"2025-10-10T00:00:00"}
