{"id":"https://openalex.org/W3138163342","doi":"https://doi.org/10.1186/s40537-021-00477-z","title":"Prediction of chemoresistance trait of cancer cell lines using machine learning algorithms and systems biology analysis","display_name":"Prediction of chemoresistance trait of cancer cell lines using machine learning algorithms and systems biology analysis","publication_year":2021,"publication_date":"2021-07-05","ids":{"openalex":"https://openalex.org/W3138163342","doi":"https://doi.org/10.1186/s40537-021-00477-z","mag":"3138163342"},"language":"en","primary_location":{"id":"doi:10.1186/s40537-021-00477-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-021-00477-z","pdf_url":"https://journalofbigdata.springeropen.com/counter/pdf/10.1186/s40537-021-00477-z","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journalofbigdata.springeropen.com/counter/pdf/10.1186/s40537-021-00477-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008714410","display_name":"Atousa Ataei","orcid":null},"institutions":[{"id":"https://openalex.org/I21203515","display_name":"Kazan Federal University","ror":"https://ror.org/05256ym39","country_code":"RU","type":"education","lineage":["https://openalex.org/I21203515"]}],"countries":["RU"],"is_corresponding":true,"raw_author_name":"Atousa Ataei","raw_affiliation_strings":["Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia"],"affiliations":[{"raw_affiliation_string":"Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia","institution_ids":["https://openalex.org/I21203515"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049101583","display_name":"Niloufar Seyed Majidi","orcid":"https://orcid.org/0009-0002-3979-4832"},"institutions":[{"id":"https://openalex.org/I1516879","display_name":"Tarbiat Modares University","ror":"https://ror.org/03mwgfy56","country_code":"IR","type":"education","lineage":["https://openalex.org/I1516879"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Niloufar Seyed Majidi","raw_affiliation_strings":["Department of Biophysics, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Biophysics, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran","institution_ids":["https://openalex.org/I1516879"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051260584","display_name":"Javad Zahiri","orcid":null},"institutions":[{"id":"https://openalex.org/I1516879","display_name":"Tarbiat Modares University","ror":"https://ror.org/03mwgfy56","country_code":"IR","type":"education","lineage":["https://openalex.org/I1516879"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Javad Zahiri","raw_affiliation_strings":["Bioinformatics and Computational Omics Lab (BioCOOL), Department of Biophysics, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Bioinformatics and Computational Omics Lab (BioCOOL), Department of Biophysics, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran","institution_ids":["https://openalex.org/I1516879"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013127809","display_name":"Mehrdad Rostami","orcid":"https://orcid.org/0000-0001-5710-217X"},"institutions":[{"id":"https://openalex.org/I3124704065","display_name":"University of Kurdistan","ror":"https://ror.org/04k89yk85","country_code":"IR","type":"education","lineage":["https://openalex.org/I3124704065"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Mehrdad Rostami","raw_affiliation_strings":["Depart-ment of Computer Engineering, University of Kurdistan, Sanandaj, Iran","Department of Computer Engineering, University of Kurdistan, Sanandaj, Iran"],"affiliations":[{"raw_affiliation_string":"Depart-ment of Computer Engineering, University of Kurdistan, Sanandaj, Iran","institution_ids":["https://openalex.org/I3124704065"]},{"raw_affiliation_string":"Department of Computer Engineering, University of Kurdistan, Sanandaj, Iran","institution_ids":["https://openalex.org/I3124704065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003496440","display_name":"Seyed Shahriar Arab","orcid":"https://orcid.org/0000-0002-2739-1617"},"institutions":[{"id":"https://openalex.org/I1516879","display_name":"Tarbiat Modares University","ror":"https://ror.org/03mwgfy56","country_code":"IR","type":"education","lineage":["https://openalex.org/I1516879"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"S. Shahriar Arab","raw_affiliation_strings":["Department of Biophysics, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran"],"affiliations":[{"raw_affiliation_string":"Department of Biophysics, Faculty of Biological Sciences, Tarbiat Modares University, Tehran, Iran","institution_ids":["https://openalex.org/I1516879"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066414193","display_name":"Albert A. Rizvanov","orcid":"https://orcid.org/0000-0002-9427-5739"},"institutions":[{"id":"https://openalex.org/I21203515","display_name":"Kazan Federal University","ror":"https://ror.org/05256ym39","country_code":"RU","type":"education","lineage":["https://openalex.org/I21203515"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Albert A. Rizvanov","raw_affiliation_strings":["Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia"],"affiliations":[{"raw_affiliation_string":"Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia","institution_ids":["https://openalex.org/I21203515"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5008714410"],"corresponding_institution_ids":["https://openalex.org/I21203515"],"apc_list":{"value":1060,"currency":"GBP","value_usd":1300},"apc_paid":{"value":1060,"currency":"GBP","value_usd":1300},"fwci":0.9051,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.77517753,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"8","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13526","display_name":"14-3-3 protein interactions","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.7068932056427002},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6695705652236938},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5990864038467407},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5621199011802673},{"id":"https://openalex.org/keywords/naive-bayes-classifier","display_name":"Naive Bayes classifier","score":0.5586865544319153},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.49734118580818176},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.4866648316383362},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4548538029193878},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.42430412769317627},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3078465163707733},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2661929726600647},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.20413607358932495}],"concepts":[{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.7068932056427002},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6695705652236938},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5990864038467407},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5621199011802673},{"id":"https://openalex.org/C52001869","wikidata":"https://www.wikidata.org/wiki/Q812530","display_name":"Naive Bayes classifier","level":3,"score":0.5586865544319153},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.49734118580818176},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.4866648316383362},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4548538029193878},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.42430412769317627},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3078465163707733},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2661929726600647},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.20413607358932495},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/s40537-021-00477-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-021-00477-z","pdf_url":"https://journalofbigdata.springeropen.com/counter/pdf/10.1186/s40537-021-00477-z","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:d59c9afaf2f1488aad436b49fc3d2533","is_oa":true,"landing_page_url":"https://doaj.org/article/d59c9afaf2f1488aad436b49fc3d2533","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Big Data, Vol 8, Iss 1, Pp 1-21 (2021)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s40537-021-00477-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-021-00477-z","pdf_url":"https://journalofbigdata.springeropen.com/counter/pdf/10.1186/s40537-021-00477-z","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.7599999904632568,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3138163342.pdf","grobid_xml":"https://content.openalex.org/works/W3138163342.grobid-xml"},"referenced_works_count":97,"referenced_works":["https://openalex.org/W70383152","https://openalex.org/W81419320","https://openalex.org/W84548433","https://openalex.org/W351296582","https://openalex.org/W780055371","https://openalex.org/W1520812622","https://openalex.org/W1544868720","https://openalex.org/W1609044025","https://openalex.org/W1644997609","https://openalex.org/W1909141355","https://openalex.org/W1924689489","https://openalex.org/W1967040415","https://openalex.org/W1968523955","https://openalex.org/W1976457549","https://openalex.org/W1990013637","https://openalex.org/W2010819084","https://openalex.org/W2015561372","https://openalex.org/W2016226316","https://openalex.org/W2025807499","https://openalex.org/W2027707030","https://openalex.org/W2028634149","https://openalex.org/W2033923013","https://openalex.org/W2044328492","https://openalex.org/W2047245698","https://openalex.org/W2047265596","https://openalex.org/W2052301181","https://openalex.org/W2054686114","https://openalex.org/W2058743530","https://openalex.org/W2066730945","https://openalex.org/W2070050178","https://openalex.org/W2070302019","https://openalex.org/W2088670355","https://openalex.org/W2092506313","https://openalex.org/W2092677877","https://openalex.org/W2095433244","https://openalex.org/W2100117628","https://openalex.org/W2103151642","https://openalex.org/W2105499314","https://openalex.org/W2107665951","https://openalex.org/W2108234281","https://openalex.org/W2110216592","https://openalex.org/W2112916072","https://openalex.org/W2117236995","https://openalex.org/W2119387367","https://openalex.org/W2128215249","https://openalex.org/W2131487381","https://openalex.org/W2137255856","https://openalex.org/W2145261833","https://openalex.org/W2158087245","https://openalex.org/W2158926375","https://openalex.org/W2159675211","https://openalex.org/W2187089797","https://openalex.org/W2203664521","https://openalex.org/W2302088846","https://openalex.org/W2303680209","https://openalex.org/W2321738746","https://openalex.org/W2342603028","https://openalex.org/W2497633722","https://openalex.org/W2522313999","https://openalex.org/W2549637445","https://openalex.org/W2582743722","https://openalex.org/W2722321450","https://openalex.org/W2725171488","https://openalex.org/W2744936891","https://openalex.org/W2752105816","https://openalex.org/W2782196486","https://openalex.org/W2782454362","https://openalex.org/W2788631472","https://openalex.org/W2794532950","https://openalex.org/W2806295587","https://openalex.org/W2883856958","https://openalex.org/W2887685819","https://openalex.org/W2889321024","https://openalex.org/W2891762718","https://openalex.org/W2896312938","https://openalex.org/W2899057363","https://openalex.org/W2899134575","https://openalex.org/W2900278036","https://openalex.org/W2900332767","https://openalex.org/W2902487302","https://openalex.org/W2905779127","https://openalex.org/W2910727582","https://openalex.org/W2915433652","https://openalex.org/W2925005147","https://openalex.org/W2949066452","https://openalex.org/W2971534815","https://openalex.org/W2997055652","https://openalex.org/W2999309192","https://openalex.org/W3004100526","https://openalex.org/W3033038651","https://openalex.org/W3044416185","https://openalex.org/W3049707914","https://openalex.org/W3082811123","https://openalex.org/W3089379360","https://openalex.org/W3127179929","https://openalex.org/W3132451580","https://openalex.org/W4250831585"],"related_works":["https://openalex.org/W2394466068","https://openalex.org/W1987683558","https://openalex.org/W2726838704","https://openalex.org/W4220802396","https://openalex.org/W2393473353","https://openalex.org/W2373790322","https://openalex.org/W2171665309","https://openalex.org/W4386564352","https://openalex.org/W4378417285","https://openalex.org/W2952668426"],"abstract_inverted_index":{"Abstract":[0],"Most":[1],"of":[2,15,38,161,213],"the":[3,36,51,62,74,81,87,94,126,142,151,158,162,166,175,188,191,194,201,211,214,243],"current":[4],"cancer":[5,19,40,116],"treatment":[6],"approaches":[7],"are":[8,234],"invasive":[9],"along":[10],"with":[11],"a":[12,26,43],"broad":[13],"spectrum":[14],"side":[16],"effects.":[17],"Furthermore,":[18,210],"drug":[20,44],"resistance":[21,37,129,185],"known":[22,45],"as":[23,46,104,200],"chemoresistance":[24,221],"is":[25],"huge":[27],"obstacle":[28],"during":[29],"treatment.":[30],"This":[31],"study":[32],"aims":[33],"to":[34,42,57,79,108,181,206],"predict":[35],"several":[39,219],"cell-lines":[41],"Cisplatin.":[47],"In":[48,77],"this":[49],"papers":[50],"NCBI":[52],"GEO":[53],"database":[54],"was":[55,65,90,147,169],"used":[56,103],"obtain":[58],"data":[59,64],"and":[60,67,112,128,187,193],"then":[61,102,148],"harvested":[63],"normalized":[66],"its":[68],"batch":[69],"effects":[70],"were":[71,101,131,136,179,198],"corrected":[72],"by":[73,141],"Combat":[75],"software.":[76,156],"order":[78],"select":[80],"appropriate":[82],"features":[83],"for":[84,245],"machine":[85,105],"learning,":[86],"feature":[88],"selection/reduction":[89],"performed":[91,149,167],"based":[92],"on":[93,150],"Fisher":[95],"Score":[96],"method.":[97],"Six":[98],"different":[99],"algorithms":[100,107,197],"learning":[106],"detect":[109],"Cisplatin":[110],"resistant":[111],"sensitive":[113,127,189],"samples":[114,130,186],"in":[115,138],"cell":[117],"lines.":[118],"Moreover,":[119],"Differentially":[120],"Expressed":[121],"Genes":[122],"(DEGs)":[123],"between":[124,183],"all":[125],"harvested.":[132],"The":[133],"selected":[134],"genes":[135,164,222],"enriched":[137],"biological":[139,159],"pathways":[140],"enrichr":[143],"database.":[144],"Topological":[145],"analysis":[146,217],"constructed":[152],"networks":[153],"using":[154],"Cytoscape":[155],"Finally,":[157],"description":[160],"output":[163],"from":[165],"analyses":[168],"investigated":[170],"through":[171],"literature":[172],"review.":[173],"Among":[174],"six":[176],"classifiers":[177],"which":[178,224],"trained":[180],"distinguish":[182],"cisplatin":[184],"ones,":[190],"KNN":[192],"Na\u00efve":[195],"Bayes":[196],"proposed":[199],"most":[202],"convenient":[203],"machines":[204],"according":[205],"some":[207],"calculated":[208],"measures.":[209],"results":[212],"systems":[215],"biology":[216],"determined":[218],"potential":[220],"among":[223],"PTGER3,":[225],"YWHAH,":[226],"CTNNB1,":[227],"ANKRD50,":[228],"EDNRB,":[229],"ACSL6,":[230],"IFNG":[231],"and,":[232],"CTNNB1":[233],"topologically":[235],"more":[236],"important":[237],"than":[238],"others.":[239],"These":[240],"predictions":[241],"pave":[242],"way":[244],"further":[246],"experimental":[247],"researches.":[248]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
