{"id":"https://openalex.org/W2890626854","doi":"https://doi.org/10.1186/s40537-018-0139-2","title":"Ontology boosted deep learning for disease name extraction from Twitter messages","display_name":"Ontology boosted deep learning for disease name extraction from Twitter messages","publication_year":2018,"publication_date":"2018-09-10","ids":{"openalex":"https://openalex.org/W2890626854","doi":"https://doi.org/10.1186/s40537-018-0139-2","mag":"2890626854"},"language":"en","primary_location":{"id":"doi:10.1186/s40537-018-0139-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-018-0139-2","pdf_url":"https://journalofbigdata.springeropen.com/track/pdf/10.1186/s40537-018-0139-2","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journalofbigdata.springeropen.com/track/pdf/10.1186/s40537-018-0139-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071762093","display_name":"Mark Abraham Magumba","orcid":"https://orcid.org/0000-0002-2060-8625"},"institutions":[{"id":"https://openalex.org/I72227227","display_name":"Makerere University","ror":"https://ror.org/03dmz0111","country_code":"UG","type":"education","lineage":["https://openalex.org/I72227227"]}],"countries":["UG"],"is_corresponding":true,"raw_author_name":"Mark Abraham Magumba","raw_affiliation_strings":["Department of Information Systems, Makerere University College of Computing and Information Sciences, Kampala, Uganda"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Systems, Makerere University College of Computing and Information Sciences, Kampala, Uganda","institution_ids":["https://openalex.org/I72227227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005950162","display_name":"Peter Nabende","orcid":"https://orcid.org/0000-0003-2141-7940"},"institutions":[{"id":"https://openalex.org/I72227227","display_name":"Makerere University","ror":"https://ror.org/03dmz0111","country_code":"UG","type":"education","lineage":["https://openalex.org/I72227227"]}],"countries":["UG"],"is_corresponding":false,"raw_author_name":"Peter Nabende","raw_affiliation_strings":["Department of Information Systems, Makerere University College of Computing and Information Sciences, Kampala, Uganda"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Systems, Makerere University College of Computing and Information Sciences, Kampala, Uganda","institution_ids":["https://openalex.org/I72227227"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006965550","display_name":"Ernest Mwebaze","orcid":"https://orcid.org/0000-0002-1305-6367"},"institutions":[{"id":"https://openalex.org/I72227227","display_name":"Makerere University","ror":"https://ror.org/03dmz0111","country_code":"UG","type":"education","lineage":["https://openalex.org/I72227227"]}],"countries":["UG"],"is_corresponding":false,"raw_author_name":"Ernest Mwebaze","raw_affiliation_strings":["Department of Computer Science, Makerere University College of Computing and Information Sciences, Kampala, Uganda"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Makerere University College of Computing and Information Sciences, Kampala, Uganda","institution_ids":["https://openalex.org/I72227227"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5071762093"],"corresponding_institution_ids":["https://openalex.org/I72227227"],"apc_list":{"value":1060,"currency":"GBP","value_usd":1300},"apc_paid":{"value":1060,"currency":"GBP","value_usd":1300},"fwci":1.1135,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.77820132,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"5","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11819","display_name":"Data-Driven Disease Surveillance","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8987864255905151},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8442450761795044},{"id":"https://openalex.org/keywords/lexicon","display_name":"Lexicon","score":0.7380367517471313},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5515706539154053},{"id":"https://openalex.org/keywords/ontology-learning","display_name":"Ontology learning","score":0.551264226436615},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.46298280358314514},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.45718950033187866},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4564410150051117},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.439861536026001},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.41192707419395447},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.3345901072025299},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.32298585772514343},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.2577718496322632},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.1867426037788391}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8987864255905151},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8442450761795044},{"id":"https://openalex.org/C2778121359","wikidata":"https://www.wikidata.org/wiki/Q8096","display_name":"Lexicon","level":2,"score":0.7380367517471313},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5515706539154053},{"id":"https://openalex.org/C2777002027","wikidata":"https://www.wikidata.org/wiki/Q3620938","display_name":"Ontology learning","level":5,"score":0.551264226436615},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.46298280358314514},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.45718950033187866},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4564410150051117},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.439861536026001},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.41192707419395447},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.3345901072025299},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.32298585772514343},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.2577718496322632},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.1867426037788391},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/s40537-018-0139-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-018-0139-2","pdf_url":"https://journalofbigdata.springeropen.com/track/pdf/10.1186/s40537-018-0139-2","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:66f2098fea4744d49dfc0aaa7c429dfe","is_oa":true,"landing_page_url":"https://doaj.org/article/66f2098fea4744d49dfc0aaa7c429dfe","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Big Data, Vol 5, Iss 1, Pp 1-19 (2018)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s40537-018-0139-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-018-0139-2","pdf_url":"https://journalofbigdata.springeropen.com/track/pdf/10.1186/s40537-018-0139-2","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6200000047683716}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2890626854.pdf","grobid_xml":"https://content.openalex.org/works/W2890626854.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1136513136","https://openalex.org/W1494567425","https://openalex.org/W1502957213","https://openalex.org/W1521422465","https://openalex.org/W1614298861","https://openalex.org/W1976323204","https://openalex.org/W1988115241","https://openalex.org/W1989784624","https://openalex.org/W2014409502","https://openalex.org/W2053039860","https://openalex.org/W2075878045","https://openalex.org/W2103235794","https://openalex.org/W2117239687","https://openalex.org/W2120467164","https://openalex.org/W2151932005","https://openalex.org/W2229162816","https://openalex.org/W2277302289","https://openalex.org/W2426119782","https://openalex.org/W2617029790","https://openalex.org/W2774989123"],"related_works":["https://openalex.org/W2024342824","https://openalex.org/W4255991504","https://openalex.org/W1771592750","https://openalex.org/W169590660","https://openalex.org/W4251889114","https://openalex.org/W2159818280","https://openalex.org/W2227378261","https://openalex.org/W2811119308","https://openalex.org/W2711668034","https://openalex.org/W1543655656"],"abstract_inverted_index":{"This":[0,86],"paper":[1],"presents":[2],"an":[3],"ontology":[4,66,77],"based":[5],"deep":[6],"learning":[7],"approach":[8,17],"for":[9,129,133],"extracting":[10],"disease":[11],"names":[12],"from":[13,34],"Twitter":[14,99],"messages.":[15],"The":[16,38],"relies":[18],"on":[19],"simple":[20],"features":[21],"obtained":[22],"via":[23],"conceptual":[24,74],"representations":[25],"of":[26,40,51,61,88,127],"messages":[27,100],"to":[28,80,94,122],"obtain":[29],"results":[30],"that":[31,44,117],"out-perform":[32],"those":[33],"word":[35],"level":[36,75],"models.":[37],"significance":[39],"this":[41],"development":[42],"is":[43,68,78,87],"it":[45,92,119],"can":[46],"potentially":[47],"reduce":[48],"the":[49,59,73,76],"cost":[50,60,71],"generating":[52],"named":[53],"entity":[54],"recognition":[55],"models":[56,132],"by":[57],"reducing":[58],"annotating":[62],"training":[63],"data":[64],"since":[65],"creation":[67],"a":[69,104,124],"one-time":[70],"as":[72],"meant":[79],"be":[81],"fairly":[82],"static":[83],"and":[84,110,113],"reusable.":[85],"great":[89],"importance":[90],"when":[91],"comes":[93],"social":[95],"media":[96],"text":[97,128],"like":[98],"where":[101],"you":[102],"have":[103],"large,":[105],"unbounded":[106],"lexicon":[107],"with":[108],"spatial":[109],"temporal":[111],"variations":[112],"other":[114],"inherent":[115],"biases":[116],"make":[118],"logistically":[120],"untenable":[121],"annotate":[123],"representative":[125],"amount":[126],"general":[130],"purpose":[131],"live":[134],"applications.":[135]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
