{"id":"https://openalex.org/W2768654829","doi":"https://doi.org/10.1186/s40537-017-0102-7","title":"HCudaBLAST: an implementation of BLAST on Hadoop and Cuda","display_name":"HCudaBLAST: an implementation of BLAST on Hadoop and Cuda","publication_year":2017,"publication_date":"2017-11-16","ids":{"openalex":"https://openalex.org/W2768654829","doi":"https://doi.org/10.1186/s40537-017-0102-7","mag":"2768654829"},"language":"en","primary_location":{"id":"doi:10.1186/s40537-017-0102-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-017-0102-7","pdf_url":"https://journalofbigdata.springeropen.com/track/pdf/10.1186/s40537-017-0102-7","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journalofbigdata.springeropen.com/track/pdf/10.1186/s40537-017-0102-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030501294","display_name":"Nilay Khare","orcid":"https://orcid.org/0000-0003-0450-9157"},"institutions":[{"id":"https://openalex.org/I91277730","display_name":"Maulana Azad National Institute of Technology","ror":"https://ror.org/026vtd268","country_code":"IN","type":"education","lineage":["https://openalex.org/I91277730"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Nilay Khare","raw_affiliation_strings":["Maulana Azad National Institute of Technology, Bhopal, Madhya Pradesh, 462003, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Maulana Azad National Institute of Technology, Bhopal, Madhya Pradesh, 462003, India","institution_ids":["https://openalex.org/I91277730"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108953546","display_name":"Alind Khare","orcid":null},"institutions":[{"id":"https://openalex.org/I119939252","display_name":"Indraprastha Institute of Information Technology Delhi","ror":"https://ror.org/03vfp4g33","country_code":"IN","type":"education","lineage":["https://openalex.org/I119939252"]},{"id":"https://openalex.org/I68891433","display_name":"Indian Institute of Technology Delhi","ror":"https://ror.org/049tgcd06","country_code":"IN","type":"education","lineage":["https://openalex.org/I68891433"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Alind Khare","raw_affiliation_strings":["IIIT, Delhi, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IIIT, Delhi, India","institution_ids":["https://openalex.org/I119939252","https://openalex.org/I68891433"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101803510","display_name":"Farhan Khan","orcid":"https://orcid.org/0000-0002-2290-1067"},"institutions":[{"id":"https://openalex.org/I91277730","display_name":"Maulana Azad National Institute of Technology","ror":"https://ror.org/026vtd268","country_code":"IN","type":"education","lineage":["https://openalex.org/I91277730"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Farhan Khan","raw_affiliation_strings":["Maulana Azad National Institute of Technology, Bhopal, Madhya Pradesh, 462003, India"],"raw_orcid":"https://orcid.org/0000-0002-2290-1067","affiliations":[{"raw_affiliation_string":"Maulana Azad National Institute of Technology, Bhopal, Madhya Pradesh, 462003, India","institution_ids":["https://openalex.org/I91277730"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101803510"],"corresponding_institution_ids":["https://openalex.org/I91277730"],"apc_list":{"value":1060,"currency":"GBP","value_usd":1300},"apc_paid":{"value":1060,"currency":"GBP","value_usd":1300},"fwci":0.5609,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.67334397,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"4","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9754999876022339,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8175235390663147},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.7766735553741455},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.771891713142395},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.745718240737915},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5021467208862305},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.4412859380245209},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.41322576999664307},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32401853799819946},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.29210323095321655},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.2529676854610443},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10202404856681824},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.09175464510917664},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0786488950252533}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8175235390663147},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.7766735553741455},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.771891713142395},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.745718240737915},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5021467208862305},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.4412859380245209},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.41322576999664307},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32401853799819946},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.29210323095321655},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.2529676854610443},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10202404856681824},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.09175464510917664},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0786488950252533}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/s40537-017-0102-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-017-0102-7","pdf_url":"https://journalofbigdata.springeropen.com/track/pdf/10.1186/s40537-017-0102-7","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:c5ebb937e92e48beaf051d8f3f9d9575","is_oa":true,"landing_page_url":"https://doaj.org/article/c5ebb937e92e48beaf051d8f3f9d9575","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Big Data, Vol 4, Iss 1, Pp 1-8 (2017)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s40537-017-0102-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-017-0102-7","pdf_url":"https://journalofbigdata.springeropen.com/track/pdf/10.1186/s40537-017-0102-7","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320318908","display_name":"Maulana Azad National Institute of Technology","ror":"https://ror.org/026vtd268"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2768654829.pdf","grobid_xml":"https://content.openalex.org/works/W2768654829.grobid-xml"},"referenced_works_count":12,"referenced_works":["https://openalex.org/W1494271578","https://openalex.org/W2011652244","https://openalex.org/W2029195137","https://openalex.org/W2048113526","https://openalex.org/W2055043387","https://openalex.org/W2060312180","https://openalex.org/W2087064593","https://openalex.org/W2096041635","https://openalex.org/W2131229759","https://openalex.org/W2158865579","https://openalex.org/W2173213060","https://openalex.org/W4245224366"],"related_works":["https://openalex.org/W2983282793","https://openalex.org/W1973046741","https://openalex.org/W2317245370","https://openalex.org/W3138386522","https://openalex.org/W2499279132","https://openalex.org/W4249323025","https://openalex.org/W198851386","https://openalex.org/W2030310580","https://openalex.org/W947442053","https://openalex.org/W1980160788"],"abstract_inverted_index":{"The":[0,27,148],"world":[1],"of":[2,29,49,78,82,112,162],"DNA":[3,33,117,136],"sequencing":[4,118],"has":[5],"not":[6,43],"only":[7],"been":[8,105],"a":[9,54,131],"difficult":[10],"field":[11],"since":[12],"it":[13,19],"was":[14],"first":[15],"worked":[16],"upon,":[17],"but":[18],"is":[20,35,53],"also":[21,121],"growing":[22],"at":[23],"an":[24],"exponential":[25],"rate.":[26],"amount":[28,111],"data":[30,50,113],"involved":[31,114],"in":[32,115],"searching":[34,116,124,135],"huge,":[36],"thereby":[37],"normal":[38],"tools":[39],"or":[40,67],"algorithms":[41],"are":[42,90,154],"suitable":[44],"to":[45,64,70,92,107],"handle":[46,108],"this":[47,127],"degree":[48],"processing.":[51],"BLAST":[52,83],"tool":[55],"given":[56],"by":[57,169],"National":[58],"Center":[59],"for":[60,94,134,145],"Biotechnology":[61],"Information":[62],"(NCBI)":[63],"compare":[65],"nucleotide":[66],"protein":[68],"sequences":[69,98],"sequence":[71],"databases":[72],"and":[73,101,119,142,164],"calculate":[74],"the":[75,109,123,159,165,170],"statistical":[76],"significance":[77],"matches.":[79],"Many":[80],"variants":[81],"such":[84],"as":[85],"blastn,":[86],"blastp,":[87],"blastx,":[88],"etc.":[89],"used":[91],"search":[93],"nucleotides,":[95],"proteins,":[96],"nucleotides-to-proteins":[97],"respectively.":[99],"GPU-BLAST":[100],"HBLAST":[102],"have":[103],"already":[104],"proposed":[106],"vast":[110],"they":[120],"speedup":[122],"process.":[125],"In":[126],"article,":[128],"we":[129],"propose":[130],"new":[132],"model":[133],"sequences\u2014HCudaBLAST.":[137],"It":[138],"involves":[139],"CUDA":[140],"processing":[141],"Hadoop":[143,171],"combined":[144],"efficient":[146],"searching.":[147],"results":[149],"recorded":[150],"after":[151],"implementing":[152],"HCudaBLAST":[153],"shown.":[155],"This":[156],"solution":[157],"combines":[158],"multi-core":[160],"parallelism":[161],"GPGPUs":[163],"scalability":[166],"feature":[167],"provided":[168],"framework.":[172]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
