{"id":"https://openalex.org/W2605328193","doi":"https://doi.org/10.1186/s40537-017-0067-6","title":"Big data driven co-occurring evidence discovery in chronic obstructive pulmonary disease patients","display_name":"Big data driven co-occurring evidence discovery in chronic obstructive pulmonary disease patients","publication_year":2017,"publication_date":"2017-04-04","ids":{"openalex":"https://openalex.org/W2605328193","doi":"https://doi.org/10.1186/s40537-017-0067-6","mag":"2605328193"},"language":"en","primary_location":{"id":"doi:10.1186/s40537-017-0067-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-017-0067-6","pdf_url":"https://journalofbigdata.springeropen.com/track/pdf/10.1186/s40537-017-0067-6","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journalofbigdata.springeropen.com/track/pdf/10.1186/s40537-017-0067-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004639572","display_name":"Christopher Baechle","orcid":"https://orcid.org/0000-0002-6018-066X"},"institutions":[{"id":"https://openalex.org/I63772739","display_name":"Florida Atlantic University","ror":"https://ror.org/05p8w6387","country_code":"US","type":"education","lineage":["https://openalex.org/I63772739"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christopher Baechle","raw_affiliation_strings":["Department of Computer & Electrical Engineering and Computer Science, College of Engineering, Florida Atlantic University, Boca Raton, FL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer & Electrical Engineering and Computer Science, College of Engineering, Florida Atlantic University, Boca Raton, FL, USA","institution_ids":["https://openalex.org/I63772739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043608352","display_name":"Ankur Agarwal","orcid":"https://orcid.org/0000-0003-4454-2963"},"institutions":[{"id":"https://openalex.org/I63772739","display_name":"Florida Atlantic University","ror":"https://ror.org/05p8w6387","country_code":"US","type":"education","lineage":["https://openalex.org/I63772739"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ankur Agarwal","raw_affiliation_strings":["Department of Computer & Electrical Engineering and Computer Science, College of Engineering, Florida Atlantic University, Boca Raton, FL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer & Electrical Engineering and Computer Science, College of Engineering, Florida Atlantic University, Boca Raton, FL, USA","institution_ids":["https://openalex.org/I63772739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084641325","display_name":"Xingquan Zhu","orcid":"https://orcid.org/0000-0003-4129-9611"},"institutions":[{"id":"https://openalex.org/I63772739","display_name":"Florida Atlantic University","ror":"https://ror.org/05p8w6387","country_code":"US","type":"education","lineage":["https://openalex.org/I63772739"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xingquan Zhu","raw_affiliation_strings":["Department of Computer & Electrical Engineering and Computer Science, College of Engineering, Florida Atlantic University, Boca Raton, FL, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer & Electrical Engineering and Computer Science, College of Engineering, Florida Atlantic University, Boca Raton, FL, USA","institution_ids":["https://openalex.org/I63772739"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5004639572"],"corresponding_institution_ids":["https://openalex.org/I63772739"],"apc_list":{"value":1060,"currency":"GBP","value_usd":1300},"apc_paid":{"value":1060,"currency":"GBP","value_usd":1300},"fwci":1.2089,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.79010771,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"4","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12246","display_name":"Chronic Disease Management Strategies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12246","display_name":"Chronic Disease Management Strategies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T14400","display_name":"Medical Coding and Health Information","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10143","display_name":"Chronic Obstructive Pulmonary Disease (COPD) Research","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/copd","display_name":"COPD","score":0.7897830009460449},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5792276859283447},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.5164304375648499},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.46111392974853516},{"id":"https://openalex.org/keywords/pulmonary-disease","display_name":"Pulmonary disease","score":0.43815404176712036},{"id":"https://openalex.org/keywords/medical-record","display_name":"Medical record","score":0.4313593804836273},{"id":"https://openalex.org/keywords/obstructive-lung-disease","display_name":"Obstructive lung disease","score":0.42872756719589233},{"id":"https://openalex.org/keywords/cohort","display_name":"Cohort","score":0.42518681287765503},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.4104008674621582},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4098644554615021},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.2662045359611511},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.12199726700782776}],"concepts":[{"id":"https://openalex.org/C2776780178","wikidata":"https://www.wikidata.org/wiki/Q199804","display_name":"COPD","level":2,"score":0.7897830009460449},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5792276859283447},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.5164304375648499},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.46111392974853516},{"id":"https://openalex.org/C2992779976","wikidata":"https://www.wikidata.org/wiki/Q3286546","display_name":"Pulmonary disease","level":2,"score":0.43815404176712036},{"id":"https://openalex.org/C195910791","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Medical record","level":2,"score":0.4313593804836273},{"id":"https://openalex.org/C2777104659","wikidata":"https://www.wikidata.org/wiki/Q3508797","display_name":"Obstructive lung disease","level":3,"score":0.42872756719589233},{"id":"https://openalex.org/C72563966","wikidata":"https://www.wikidata.org/wiki/Q1303415","display_name":"Cohort","level":2,"score":0.42518681287765503},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.4104008674621582},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4098644554615021},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.2662045359611511},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.12199726700782776},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C180747234","wikidata":"https://www.wikidata.org/wiki/Q23373","display_name":"Cognitive psychology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s40537-017-0067-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-017-0067-6","pdf_url":"https://journalofbigdata.springeropen.com/track/pdf/10.1186/s40537-017-0067-6","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:9dc8c9bc64044894a18299eefd4ed511","is_oa":true,"landing_page_url":"https://doaj.org/article/9dc8c9bc64044894a18299eefd4ed511","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Big Data, Vol 4, Iss 1, Pp 1-18 (2017)","raw_type":"article"},{"id":"pmh:oai:opus.lib.uts.edu.au:10453/123646","is_oa":false,"landing_page_url":"http://hdl.handle.net/10453/123646","pdf_url":null,"source":{"id":"https://openalex.org/S4377196279","display_name":"OPUS - Open Publications of UTS Scholars (University of Technology Sydney)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114017466","host_organization_name":"University of Technology Sydney","host_organization_lineage":["https://openalex.org/I114017466"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/s40537-017-0067-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-017-0067-6","pdf_url":"https://journalofbigdata.springeropen.com/track/pdf/10.1186/s40537-017-0067-6","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.6600000262260437}],"awards":[{"id":"https://openalex.org/G2273913964","display_name":"Phase II I/UCRC Florida Atlantic University Site: Center for Health Organization Transformation.","funder_award_id":"1624497","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3131236173","display_name":null,"funder_award_id":"IIP-1624497","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G3721180833","display_name":null,"funder_award_id":"IIP-1444949","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6868167314","display_name":"PFI:AIR - TT:  A Clinical Predictive Model Based Smart Decision Support System for Congestive Obstructive Pulmonary Disease (COPD) related Re-hospitalization","funder_award_id":"1444949","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7361114035","display_name":null,"funder_award_id":"162449","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2605328193.pdf","grobid_xml":"https://content.openalex.org/works/W2605328193.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W42510333","https://openalex.org/W1502607570","https://openalex.org/W1541954861","https://openalex.org/W1602694398","https://openalex.org/W1608277397","https://openalex.org/W1637593105","https://openalex.org/W1728920319","https://openalex.org/W1986327445","https://openalex.org/W2002514548","https://openalex.org/W2046913611","https://openalex.org/W2076125518","https://openalex.org/W2087779040","https://openalex.org/W2094791001","https://openalex.org/W2098162425","https://openalex.org/W2121131527","https://openalex.org/W2121784101","https://openalex.org/W2146089916","https://openalex.org/W2171548451","https://openalex.org/W2335613150","https://openalex.org/W2401521228","https://openalex.org/W2977393556","https://openalex.org/W4231131962"],"related_works":["https://openalex.org/W2326585857","https://openalex.org/W142525846","https://openalex.org/W2312602415","https://openalex.org/W2312864656","https://openalex.org/W2472126364","https://openalex.org/W2320098543","https://openalex.org/W2585009645","https://openalex.org/W2333131755","https://openalex.org/W4401482945","https://openalex.org/W2372297656"],"abstract_inverted_index":{"Chronic":[0],"Obstructive":[1],"Pulmonary":[2],"Disease":[3],"(COPD)":[4],"is":[5,27,92,94,134,162],"a":[6,50,87,104,175,344,357,378],"chronic":[7],"lung":[8,227],"disease":[9,47],"that":[10,91],"affects":[11],"airflow":[12],"to":[13,29,108,118,136,144,149,315],"the":[14,17,151,259,330,348],"lungs.":[15],"Discovering":[16],"co-occurrence":[18,33,160,236],"of":[19,77,79,84,153,156,192,347,370,381],"COPD":[20,40,62,128,371],"with":[21,39,239,248,354],"other":[22],"diseases,":[23,197,266,281,296,349],"symptoms,":[24,265,280,295,350],"and":[25,35,86,106,124,129,138,199,209,217,228,245,267,272,282,287,297,302,309,336,351,359],"medications":[26,268,283,298,352],"invaluable":[28],"medical":[30,130],"staff.":[31],"Building":[32],"indexes":[34],"finding":[36,181],"causal":[37],"relationships":[38],"can":[41,57,165,374],"be":[42,68,316,375],"difficult":[43],"because":[44],"often":[45],"times":[46],"prevalence":[48,66,242],"within":[49,61],"population":[51,65,241],"influences":[52],"results.":[53,252],"A":[54,159,304],"method":[55,177],"which":[56,164,325],"better":[58,334,345],"separate":[59],"occurrence":[60],"patients":[63],"from":[64],"would":[67],"desirable.":[69,95],"Large":[70],"hospital":[71],"systems":[72,185],"may":[73],"potentially":[74],"have":[75,146,201],"tens":[76],"millions":[78],"patient":[80],"records":[81],"spanning":[82],"decades":[83],"collection":[85],"big":[88],"data":[89],"approach":[90,361],"scalable":[93],"The":[96,220,274],"presented":[97,163],"method,":[98],"Co-Occurring":[99],"Evidence":[100],"Discovery":[101],"(COED),":[102],"presents":[103],"methodology":[105],"framework":[107],"address":[109],"these":[110],"issues.":[111],"Natural":[112],"Language":[113],"Processing":[114],"methods":[115,211,234],"are":[116,186,212,226,326],"used":[117,179],"examine":[119],"64,371":[120],"deidentified":[121],"clinical":[122,140,157,205],"notes":[123],"discover":[125],"associations":[126],"between":[127],"terms.":[131],"Apache":[132,189],"cTAKES":[133,145],"leveraged":[135],"annotate":[137],"structure":[139],"notes.":[141,158],"Several":[142],"extensions":[143],"been":[147,202],"written":[148],"parallelize":[150],"annotation":[152],"large":[154,368],"sets":[155],"score":[161,293,311],"penalize":[166],"scores":[167],"based":[168],"on":[169],"term":[170],"prevalence,":[171],"as":[172,174],"well":[173],"baseline":[176,210,233],"traditionally":[178],"for":[180,196,235,264,279,294],"co-occurrence.":[182],"These":[183],"scoring":[184,222],"implemented":[187],"using":[188,204,214,224],"Spark.":[190],"Dictionaries":[191],"ground":[193,256],"truth":[194,257],"terms":[195,324,342,373],"medications,":[198],"symptoms":[200,246],"created":[203],"domain":[206],"knowledge.":[207],"COED":[208,225,249],"compared":[213],"precision,":[215],"recall,":[216],"F1":[218,292,310],"score.":[219],"highest":[221],"diseases":[223,238],"respiratory":[229],"diseases.":[230],"In":[231],"contrast,":[232],"rank":[237],"high":[240],"highest.":[243],"Medications":[244],"evaluated":[247,254],"share":[250],"similar":[251],"When":[253],"against":[255],"dictionaries,":[258],"maximum":[260,275],"improvements":[261,276],"in":[262,277,291,329,333,377],"recall":[263,337],"were":[269,284,299,313],"0.212,":[270],"0.130,":[271],"0.174.":[273],"precision":[278,335],"0.303,":[285],"0.333,":[286],"0.180.":[288],"Median":[289],"increase":[290],"38.1%,":[300],"23.0%,":[301],"17.1%.":[303],"paired":[305],"t-test":[306],"was":[307],"performed":[308],"increases":[312],"found":[314],"statistically":[317],"significant,":[318],"where":[319],"p":[320],"<":[321],"0.01.":[322],"Penalizing":[323,339],"highly":[327],"frequent":[328],"corpus":[331],"results":[332],"performance.":[338],"frequently":[340],"occurring":[341],"gives":[343],"picture":[346],"co-occurring":[353],"COPD.":[355],"Using":[356],"mathematical":[358],"computational":[360],"rather":[362],"than":[363],"purely":[364],"expert":[365],"driven":[366],"approach,":[367],"dictionaries":[369],"related":[372],"assembled":[376],"short":[379],"amount":[380],"time.":[382]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
