{"id":"https://openalex.org/W2538364106","doi":"https://doi.org/10.1186/s40537-016-0055-2","title":"Data-aware optimization of bioinformatics workflows in hybrid clouds","display_name":"Data-aware optimization of bioinformatics workflows in hybrid clouds","publication_year":2016,"publication_date":"2016-10-20","ids":{"openalex":"https://openalex.org/W2538364106","doi":"https://doi.org/10.1186/s40537-016-0055-2","mag":"2538364106"},"language":"en","primary_location":{"id":"doi:10.1186/s40537-016-0055-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-016-0055-2","pdf_url":"https://journalofbigdata.springeropen.com/counter/pdf/10.1186/s40537-016-0055-2","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journalofbigdata.springeropen.com/counter/pdf/10.1186/s40537-016-0055-2","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033172194","display_name":"Athanassios M. Kintsakis","orcid":null},"institutions":[{"id":"https://openalex.org/I21370196","display_name":"Aristotle University of Thessaloniki","ror":"https://ror.org/02j61yw88","country_code":"GR","type":"education","lineage":["https://openalex.org/I21370196"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Athanassios M. Kintsakis","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece","institution_ids":["https://openalex.org/I21370196"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078171708","display_name":"Fotis Psomopoulos","orcid":"https://orcid.org/0000-0002-0222-4273"},"institutions":[{"id":"https://openalex.org/I21370196","display_name":"Aristotle University of Thessaloniki","ror":"https://ror.org/02j61yw88","country_code":"GR","type":"education","lineage":["https://openalex.org/I21370196"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Fotis E. Psomopoulos","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece","institution_ids":["https://openalex.org/I21370196"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014906615","display_name":"Pericles A. Mitkas","orcid":"https://orcid.org/0000-0003-2090-4202"},"institutions":[{"id":"https://openalex.org/I21370196","display_name":"Aristotle University of Thessaloniki","ror":"https://ror.org/02j61yw88","country_code":"GR","type":"education","lineage":["https://openalex.org/I21370196"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Pericles A. Mitkas","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Aristotle University of Thessaloniki, 54124, Thessaloniki, Greece","institution_ids":["https://openalex.org/I21370196"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5033172194"],"corresponding_institution_ids":["https://openalex.org/I21370196"],"apc_list":{"value":1060,"currency":"GBP","value_usd":1300},"apc_paid":{"value":1060,"currency":"GBP","value_usd":1300},"fwci":1.7724,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.90768586,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"3","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10101","display_name":"Cloud Computing and Resource Management","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8942806720733643},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8159466981887817},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.8143020868301392},{"id":"https://openalex.org/keywords/cloud-computing","display_name":"Cloud computing","score":0.6881336569786072},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.6021484136581421},{"id":"https://openalex.org/keywords/scheduling","display_name":"Scheduling (production processes)","score":0.5771069526672363},{"id":"https://openalex.org/keywords/supercomputer","display_name":"Supercomputer","score":0.5709654688835144},{"id":"https://openalex.org/keywords/load-balancing","display_name":"Load balancing (electrical power)","score":0.5609193444252014},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.5415440201759338},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36982080340385437},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.33981114625930786},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2792455852031708},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.25921517610549927},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.08811265230178833}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8942806720733643},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8159466981887817},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.8143020868301392},{"id":"https://openalex.org/C79974875","wikidata":"https://www.wikidata.org/wiki/Q483639","display_name":"Cloud computing","level":2,"score":0.6881336569786072},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.6021484136581421},{"id":"https://openalex.org/C206729178","wikidata":"https://www.wikidata.org/wiki/Q2271896","display_name":"Scheduling (production processes)","level":2,"score":0.5771069526672363},{"id":"https://openalex.org/C83283714","wikidata":"https://www.wikidata.org/wiki/Q121117","display_name":"Supercomputer","level":2,"score":0.5709654688835144},{"id":"https://openalex.org/C138959212","wikidata":"https://www.wikidata.org/wiki/Q1806783","display_name":"Load balancing (electrical power)","level":3,"score":0.5609193444252014},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.5415440201759338},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36982080340385437},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.33981114625930786},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2792455852031708},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.25921517610549927},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.08811265230178833},{"id":"https://openalex.org/C21547014","wikidata":"https://www.wikidata.org/wiki/Q1423657","display_name":"Operations management","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1186/s40537-016-0055-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-016-0055-2","pdf_url":"https://journalofbigdata.springeropen.com/counter/pdf/10.1186/s40537-016-0055-2","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1186/s40537-016-0055-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-016-0055-2","pdf_url":"https://journalofbigdata.springeropen.com/counter/pdf/10.1186/s40537-016-0055-2","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6600000262260437,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2538364106.pdf","grobid_xml":"https://content.openalex.org/works/W2538364106.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W653041767","https://openalex.org/W1481355349","https://openalex.org/W1529083614","https://openalex.org/W1582171523","https://openalex.org/W1597108197","https://openalex.org/W1835740130","https://openalex.org/W1977109114","https://openalex.org/W1978759257","https://openalex.org/W1983833794","https://openalex.org/W1985624015","https://openalex.org/W1996423252","https://openalex.org/W1997795555","https://openalex.org/W2013434113","https://openalex.org/W2024872854","https://openalex.org/W2027795005","https://openalex.org/W2029285963","https://openalex.org/W2030023185","https://openalex.org/W2051643755","https://openalex.org/W2055043387","https://openalex.org/W2057885377","https://openalex.org/W2060594888","https://openalex.org/W2061511862","https://openalex.org/W2064050001","https://openalex.org/W2077579791","https://openalex.org/W2079942837","https://openalex.org/W2085043026","https://openalex.org/W2097288488","https://openalex.org/W2099218078","https://openalex.org/W2105640400","https://openalex.org/W2107986023","https://openalex.org/W2108980486","https://openalex.org/W2120096459","https://openalex.org/W2121762798","https://openalex.org/W2126624880","https://openalex.org/W2129666400","https://openalex.org/W2135277010","https://openalex.org/W2136482257","https://openalex.org/W2137662380","https://openalex.org/W2140332639","https://openalex.org/W2146917903","https://openalex.org/W2150934173","https://openalex.org/W2151404319","https://openalex.org/W2160697532","https://openalex.org/W2168082814","https://openalex.org/W2168103533","https://openalex.org/W2169328938","https://openalex.org/W2173213060","https://openalex.org/W2296335794","https://openalex.org/W4211054902","https://openalex.org/W4229644324","https://openalex.org/W4252706339"],"related_works":["https://openalex.org/W2384867379","https://openalex.org/W2329539859","https://openalex.org/W3191490922","https://openalex.org/W2227905990","https://openalex.org/W2765823764","https://openalex.org/W3214280620","https://openalex.org/W2794038527","https://openalex.org/W2151092287","https://openalex.org/W2523801036","https://openalex.org/W2166734474"],"abstract_inverted_index":{"Life":[0],"Sciences":[1],"have":[2],"been":[3],"established":[4],"and":[5,111,114,129,144,148],"widely":[6],"accepted":[7],"as":[8,14,41],"a":[9,18,80,101,138],"foremost":[10],"Big":[11],"Data":[12],"discipline;":[13],"such":[15,40],"they":[16],"are":[17,58,66],"constant":[19],"source":[20],"of":[21,44,107,131],"the":[22,33,42,63,127],"most":[23],"computationally":[24],"challenging":[25],"problems.":[26],"In":[27,75],"order":[28],"to":[29,49,61,125],"provide":[30],"efficient":[31],"solutions,":[32],"community":[34],"is":[35],"turning":[36],"towards":[37],"scalable":[38],"approaches":[39],"utilization":[43],"cloud":[45],"resources":[46],"in":[47,87],"addition":[48],"any":[50],"existing":[51],"local":[52],"computational":[53,118],"infrastructures.":[54],"Although":[55],"bioinformatics":[56,88],"workflows":[57],"generally":[59],"amenable":[60],"parallelization,":[62],"challenges":[64],"involved":[65],"however":[67],"not":[68],"only":[69],"computationally,":[70],"but":[71],"also":[72],"data":[73,81],"intensive.":[74],"this":[76],"paper":[77],"we":[78,134],"propose":[79],"management":[82],"methodology":[83,99],"for":[84],"achieving":[85],"parallelism":[86],"workflows,":[89],"while":[90],"simultaneously":[91],"minimizing":[92],"data-interdependent":[93],"file":[94],"transfers.":[95],"We":[96],"combine":[97],"our":[98,132],"with":[100],"novel":[102],"two-stage":[103],"scheduling":[104],"approach":[105],"capable":[106],"performing":[108],"load":[109],"estimation":[110],"balancing":[112],"across":[113],"within":[115],"heterogeneous":[116],"distributed":[117],"resources.":[119],"Beyond":[120],"an":[121],"exhaustive":[122],"experimentation":[123],"regime":[124],"validate":[126],"scalability":[128],"speed-up":[130],"approach,":[133],"compare":[135],"it":[136],"against":[137],"state-of-the-art":[139],"high":[140],"performance":[141],"computing":[142],"framework":[143],"showcase":[145],"its":[146],"time":[147],"cost":[149],"advantages.":[150]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
