{"id":"https://openalex.org/W2114103981","doi":"https://doi.org/10.1186/s40537-014-0009-5","title":"DCMS: A data analytics and management system for molecular simulation","display_name":"DCMS: A data analytics and management system for molecular simulation","publication_year":2014,"publication_date":"2014-11-25","ids":{"openalex":"https://openalex.org/W2114103981","doi":"https://doi.org/10.1186/s40537-014-0009-5","mag":"2114103981","pmid":"https://pubmed.ncbi.nlm.nih.gov/26069879"},"language":"en","primary_location":{"id":"doi:10.1186/s40537-014-0009-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-014-0009-5","pdf_url":"https://journalofbigdata.springeropen.com/counter/pdf/10.1186/s40537-014-0009-5","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://journalofbigdata.springeropen.com/counter/pdf/10.1186/s40537-014-0009-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101607995","display_name":"Anand Kumar","orcid":"https://orcid.org/0000-0003-0560-7357"},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Anand Kumar","raw_affiliation_strings":["Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa, 33620 Florida USA","Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa 33620, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa, 33620 Florida USA","institution_ids":["https://openalex.org/I2613432"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa 33620, Florida, USA","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080021077","display_name":"Vladimir Grupcev","orcid":null},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vladimir Grupcev","raw_affiliation_strings":["Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa, 33620 Florida USA","Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa 33620, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa, 33620 Florida USA","institution_ids":["https://openalex.org/I2613432"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa 33620, Florida, USA","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062096850","display_name":"Meryem Berrada","orcid":null},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meryem Berrada","raw_affiliation_strings":["Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa, 33620 Florida USA","Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa 33620, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa, 33620 Florida USA","institution_ids":["https://openalex.org/I2613432"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa 33620, Florida, USA","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082990123","display_name":"Joseph Fogarty","orcid":"https://orcid.org/0009-0008-3374-5232"},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph C Fogarty","raw_affiliation_strings":["Department of Physics, University of South Florida, 4202 E. Fowler Ave., PHY114, Tampa, 33620 Florida USA","Department of Physics, University of South Florida, 4202 E. Fowler Ave., PHY114, Tampa 33620, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics, University of South Florida, 4202 E. Fowler Ave., PHY114, Tampa, 33620 Florida USA","institution_ids":["https://openalex.org/I2613432"]},{"raw_affiliation_string":"Department of Physics, University of South Florida, 4202 E. Fowler Ave., PHY114, Tampa 33620, Florida, USA","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032673243","display_name":"Yi-Cheng Tu","orcid":"https://orcid.org/0000-0002-4062-2694"},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yi-Cheng Tu","raw_affiliation_strings":["Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa, 33620 Florida USA","Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa 33620, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa, 33620 Florida USA","institution_ids":["https://openalex.org/I2613432"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of South Florida, 4202 E. Fowler Ave., ENB118, Tampa 33620, Florida, USA","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084641325","display_name":"Xingquan Zhu","orcid":"https://orcid.org/0000-0003-4129-9611"},"institutions":[{"id":"https://openalex.org/I63772739","display_name":"Florida Atlantic University","ror":"https://ror.org/05p8w6387","country_code":"US","type":"education","lineage":["https://openalex.org/I63772739"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xingquan Zhu","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, Florida Atlantic University, 777 Glades Road, EE308, Boca Raton, 33431 Florida USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, Florida Atlantic University, 777 Glades Road, EE308, Boca Raton, 33431 Florida USA","institution_ids":["https://openalex.org/I63772739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036075015","display_name":"Sagar Pandit","orcid":"https://orcid.org/0000-0001-7126-9144"},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sagar A Pandit","raw_affiliation_strings":["Department of Physics, University of South Florida, 4202 E. Fowler Ave., PHY114, Tampa, 33620 Florida USA","Department of Physics, University of South Florida, 4202 E. Fowler Ave., PHY114, Tampa 33620, Florida, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics, University of South Florida, 4202 E. Fowler Ave., PHY114, Tampa, 33620 Florida USA","institution_ids":["https://openalex.org/I2613432"]},{"raw_affiliation_string":"Department of Physics, University of South Florida, 4202 E. Fowler Ave., PHY114, Tampa 33620, Florida, USA","institution_ids":["https://openalex.org/I2613432"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050333023","display_name":"Yuni Xia","orcid":"https://orcid.org/0000-0002-9569-1355"},"institutions":[{"id":"https://openalex.org/I135191193","display_name":"University of Indianapolis","ror":"https://ror.org/052133d12","country_code":"US","type":"education","lineage":["https://openalex.org/I135191193"]},{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuni Xia","raw_affiliation_strings":["Department of Computer Science, Indiana University - Purdue University Indianapolis, 723 W. Michigan St, SL280E, Indianapolis, 46202 Indiana USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Indiana University - Purdue University Indianapolis, 723 W. Michigan St, SL280E, Indianapolis, 46202 Indiana USA","institution_ids":["https://openalex.org/I55769427","https://openalex.org/I135191193"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5101607995"],"corresponding_institution_ids":["https://openalex.org/I2613432"],"apc_list":{"value":1060,"currency":"GBP","value_usd":1300},"apc_paid":{"value":1060,"currency":"GBP","value_usd":1300},"fwci":3.5291,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.94322045,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2","issue":"1","first_page":"9","last_page":"9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.972000002861023,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.757082462310791},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5331470370292664},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.5320193767547607},{"id":"https://openalex.org/keywords/computational-science-and-engineering","display_name":"Computational Science and Engineering","score":0.4842814803123474},{"id":"https://openalex.org/keywords/data-analysis","display_name":"Data analysis","score":0.4354192018508911},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4264659881591797},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.2914426922798157},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.23439520597457886}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.757082462310791},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5331470370292664},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.5320193767547607},{"id":"https://openalex.org/C68597687","wikidata":"https://www.wikidata.org/wiki/Q362601","display_name":"Computational Science and Engineering","level":2,"score":0.4842814803123474},{"id":"https://openalex.org/C175801342","wikidata":"https://www.wikidata.org/wiki/Q1988917","display_name":"Data analysis","level":2,"score":0.4354192018508911},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4264659881591797},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.2914426922798157},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.23439520597457886}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1186/s40537-014-0009-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-014-0009-5","pdf_url":"https://journalofbigdata.springeropen.com/counter/pdf/10.1186/s40537-014-0009-5","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},{"id":"pmid:26069879","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26069879","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of big data","raw_type":null},{"id":"pmh:oai:europepmc.org:3424232","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4456345","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:scholarworks.indianapolis.iu.edu:1805/9926","is_oa":true,"landing_page_url":"https://hdl.handle.net/1805/9926","pdf_url":null,"source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"},{"id":"pmh:oai:scholarworks.iupui.edu:1805/9926","is_oa":true,"landing_page_url":"http://hdl.handle.net/1805/9926","pdf_url":null,"source":{"id":"https://openalex.org/S4306400987","display_name":"IUScholarWorks (Indiana University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I592451","host_organization_name":"Indiana University","host_organization_lineage":["https://openalex.org/I592451"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"PMC","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/s40537-014-0009-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s40537-014-0009-5","pdf_url":"https://journalofbigdata.springeropen.com/counter/pdf/10.1186/s40537-014-0009-5","source":{"id":"https://openalex.org/S2737955091","display_name":"Journal Of Big Data","issn_l":"2196-1115","issn":["2196-1115"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Big Data","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G362590237","display_name":null,"funder_award_id":"IIS-1253980","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4315539046","display_name":null,"funder_award_id":"R01GM086707","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5472402134","display_name":"III: Small:  Collaborative Research: Making Databases Green - An Energy-Aware DBMS Approach","funder_award_id":"1117699","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G919826141","display_name":"CAREER: Enabling high-throughput data management in scientific domains","funder_award_id":"1253980","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309480","display_name":"Nvidia","ror":"https://ror.org/03jdj4y14"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2114103981.pdf","grobid_xml":"https://content.openalex.org/works/W2114103981.grobid-xml"},"referenced_works_count":53,"referenced_works":["https://openalex.org/W56918557","https://openalex.org/W129132856","https://openalex.org/W162156869","https://openalex.org/W1490253884","https://openalex.org/W1495103431","https://openalex.org/W1536741282","https://openalex.org/W1550284131","https://openalex.org/W1659659259","https://openalex.org/W1663272054","https://openalex.org/W1966078827","https://openalex.org/W1969547789","https://openalex.org/W1984493861","https://openalex.org/W2003863309","https://openalex.org/W2008199711","https://openalex.org/W2013979082","https://openalex.org/W2017707167","https://openalex.org/W2019465613","https://openalex.org/W2020165513","https://openalex.org/W2029667189","https://openalex.org/W2032736799","https://openalex.org/W2038885675","https://openalex.org/W2040263621","https://openalex.org/W2049599857","https://openalex.org/W2054652150","https://openalex.org/W2056657832","https://openalex.org/W2073620060","https://openalex.org/W2084961399","https://openalex.org/W2086633818","https://openalex.org/W2089586983","https://openalex.org/W2091940856","https://openalex.org/W2097280721","https://openalex.org/W2104483553","https://openalex.org/W2107110814","https://openalex.org/W2110557355","https://openalex.org/W2112525062","https://openalex.org/W2114096959","https://openalex.org/W2118269922","https://openalex.org/W2128471644","https://openalex.org/W2133558373","https://openalex.org/W2150208547","https://openalex.org/W2151437418","https://openalex.org/W2152191782","https://openalex.org/W2162166182","https://openalex.org/W2163748245","https://openalex.org/W2166983497","https://openalex.org/W2169884736","https://openalex.org/W2170711116","https://openalex.org/W2171468534","https://openalex.org/W2187405563","https://openalex.org/W2331855253","https://openalex.org/W3099857444","https://openalex.org/W3138135046","https://openalex.org/W4256267254"],"related_works":["https://openalex.org/W4226266853","https://openalex.org/W4210252074","https://openalex.org/W4390482427","https://openalex.org/W3092201768","https://openalex.org/W2796632413","https://openalex.org/W2740083192","https://openalex.org/W2794907032","https://openalex.org/W2508885301","https://openalex.org/W4255802207","https://openalex.org/W4385267788"],"abstract_inverted_index":{"Abstract":[0],"Molecular":[1],"Simulation":[2],"(MS)":[3],"is":[4,125,163],"a":[5,32,88,131,196,241,272],"powerful":[6],"tool":[7],"for":[8,47,61],"studying":[9],"physical/chemical":[10],"features":[11],"of":[12,36,79,84,87,140,157,192,243],"large":[13,34],"systems":[14,72],"and":[15,22,38,44,54,65,77,98,154,179,201,250,256,283],"has":[16],"seen":[17],"applications":[18,92],"in":[19,115,130],"many":[20],"scientific":[21,48],"engineering":[23],"domains.":[24],"During":[25],"the":[26,29,85,106,116,141,166,193,210,229,236,247],"simulation":[27,109],"process,":[28],"experiments":[30,251],"generate":[31],"very":[33],"number":[35],"atoms":[37],"intend":[39],"to":[40,90,126,137,164,216,224,274],"observe":[41],"their":[42,55,203],"spatial":[43],"temporal":[45],"relationships":[46],"analysis.":[49,66,237],"The":[50,120],"sheer":[51],"data":[52,62,96,129,149,204,255,277],"volumes":[53],"intensive":[56,95],"interactions":[57],"impose":[58],"significant":[59],"challenges":[60],"accessing,":[63],"managing,":[64],"To":[67],"date,":[68],"existing":[69,263],"MS":[70,80,128,254,264],"software":[71,265],"fall":[73],"short":[74],"on":[75,186,246],"storage":[76],"handling":[78],"data,":[81],"mainly":[82],"because":[83],"missing":[86],"platform":[89,273],"support":[91],"that":[93,169,220,228,259],"involve":[94],"access":[97,150],"analytical":[99,167],"process.":[100],"In":[101],"this":[102],"paper,":[103],"we":[104,175],"present":[105],"database-centric":[107],"molecular":[108],"(DCMS)":[110],"system":[111,135,249],"our":[112],"team":[113],"developed":[114,176,240],"past":[117],"few":[118],"years.":[119],"main":[121],"idea":[122],"behind":[123],"DCMS":[124,244,260],"store":[127,217],"relational":[132],"database":[133],"management":[134,278],"(DBMS)":[136],"take":[138],"advantage":[139],"declarative":[142],"query":[143,152,180],"interface":[144],"(":[145],"i.e.":[146],",":[147],"SQL),":[148],"methods,":[151],"processing,":[153],"optimization":[155],"mechanisms":[156],"modern":[158,187],"DBMSs.":[159],"A":[160],"unique":[161],"challenge":[162],"handle":[165],"queries":[168],"are":[170,214,231],"often":[171],"compute-intensive.":[172],"For":[173],"that,":[174],"novel":[177],"indexing":[178],"processing":[181],"strategies":[182],"(including":[183],"algorithms":[184],"running":[185],"co-processors)":[188],"as":[189,271,281],"integrated":[190],"components":[191],"DBMS.":[194,211],"As":[195],"result,":[197],"researchers":[198],"can":[199],"upload":[200],"analyze":[202],"using":[205,252],"efficient":[206],"functions":[207],"implemented":[208],"inside":[209],"Index":[212],"structures":[213],"generated":[215],"analysis":[218],"results":[219,230],"may":[221],"be":[222],"interesting":[223],"other":[225,276],"users,":[226],"so":[227],"readily":[232],"available":[233],"without":[234],"duplicating":[235],"We":[238,267],"have":[239],"prototype":[242],"based":[245],"PostgreSQL":[248],"real":[253],"workload":[257],"show":[258],"significantly":[261],"outperforms":[262],"systems.":[266],"also":[268],"used":[269],"it":[270],"test":[275],"issues":[279],"such":[280],"security":[282],"compression.":[284]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
