{"id":"https://openalex.org/W2972597058","doi":"https://doi.org/10.1186/s13640-019-0477-9","title":"A novel method for robust markerless tracking of rodent paws in 3D","display_name":"A novel method for robust markerless tracking of rodent paws in 3D","publication_year":2019,"publication_date":"2019-09-14","ids":{"openalex":"https://openalex.org/W2972597058","doi":"https://doi.org/10.1186/s13640-019-0477-9","mag":"2972597058"},"language":"en","primary_location":{"id":"doi:10.1186/s13640-019-0477-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13640-019-0477-9","pdf_url":"https://jivp-eurasipjournals.springeropen.com/track/pdf/10.1186/s13640-019-0477-9","source":{"id":"https://openalex.org/S153767265","display_name":"EURASIP Journal on Image and Video Processing","issn_l":"1687-5176","issn":["1687-5176","1687-5281"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Image and Video Processing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jivp-eurasipjournals.springeropen.com/track/pdf/10.1186/s13640-019-0477-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014409428","display_name":"Omid Haji Maghsoudi","orcid":"https://orcid.org/0000-0001-9478-8721"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Omid Haji Maghsoudi","raw_affiliation_strings":["Omid Haji Maghsoudi Department of Radiology, University of Pennsylvania, Philadelphia, 19104, PA, USA","Omid Haji Maghsoudi Department of Radiology, University of Pennsylvania, Philadelphia, USA"],"raw_orcid":"https://orcid.org/0000-0001-9478-8721","affiliations":[{"raw_affiliation_string":"Omid Haji Maghsoudi Department of Radiology, University of Pennsylvania, Philadelphia, 19104, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Omid Haji Maghsoudi Department of Radiology, University of Pennsylvania, Philadelphia, USA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090165720","display_name":"Annie Vahedipour","orcid":null},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Annie Vahedipour","raw_affiliation_strings":["Annie Vahedipour Department of Pediatric Neurology, Yale University, Connecticut, 06520, CT, USA","Annie Vahedipour Department of Pediatric Neurology, Yale University, Connecticut, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Annie Vahedipour Department of Pediatric Neurology, Yale University, Connecticut, 06520, CT, USA","institution_ids":["https://openalex.org/I32971472"]},{"raw_affiliation_string":"Annie Vahedipour Department of Pediatric Neurology, Yale University, Connecticut, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091172811","display_name":"Andrew J. Spence","orcid":"https://orcid.org/0000-0001-7352-0128"},"institutions":[{"id":"https://openalex.org/I84392919","display_name":"Temple University","ror":"https://ror.org/00kx1jb78","country_code":"US","type":"education","lineage":["https://openalex.org/I84392919"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Spence","raw_affiliation_strings":["Department of Bioengineering, College of Engineering, Temple University, Philadelphia, 19122, PA, USA","Department of Bioengineering, College of Engineering, Temple University, Philadelphia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioengineering, College of Engineering, Temple University, Philadelphia, 19122, PA, USA","institution_ids":["https://openalex.org/I84392919"]},{"raw_affiliation_string":"Department of Bioengineering, College of Engineering, Temple University, Philadelphia, USA","institution_ids":["https://openalex.org/I84392919"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5014409428"],"corresponding_institution_ids":["https://openalex.org/I79576946"],"apc_list":{"value":1140,"currency":"GBP","value_usd":1398},"apc_paid":{"value":1140,"currency":"GBP","value_usd":1398},"fwci":0.2707,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.65311731,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2019","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10699","display_name":"Primate Behavior and Ecology","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/3207","display_name":"Social Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T10699","display_name":"Primate Behavior and Ecology","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/3207","display_name":"Social Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11228","display_name":"Bat Biology and Ecology Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10838","display_name":"Animal Behavior and Welfare Studies","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/3404","display_name":"Small Animals"},"field":{"id":"https://openalex.org/fields/34","display_name":"Veterinary"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7155340909957886},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.7089067697525024},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6297717094421387},{"id":"https://openalex.org/keywords/kalman-filter","display_name":"Kalman filter","score":0.5521668791770935},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.5387569069862366},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5100663304328918},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.4345252513885498},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.15108340978622437}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7155340909957886},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.7089067697525024},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6297717094421387},{"id":"https://openalex.org/C157286648","wikidata":"https://www.wikidata.org/wiki/Q846780","display_name":"Kalman filter","level":2,"score":0.5521668791770935},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.5387569069862366},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5100663304328918},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.4345252513885498},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.15108340978622437},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/s13640-019-0477-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13640-019-0477-9","pdf_url":"https://jivp-eurasipjournals.springeropen.com/track/pdf/10.1186/s13640-019-0477-9","source":{"id":"https://openalex.org/S153767265","display_name":"EURASIP Journal on Image and Video Processing","issn_l":"1687-5176","issn":["1687-5176","1687-5281"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Image and Video Processing","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:f54e333c584a43a08c722427ea9e6023","is_oa":true,"landing_page_url":"https://doaj.org/article/f54e333c584a43a08c722427ea9e6023","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"EURASIP Journal on Image and Video Processing, Vol 2019, Iss 1, Pp 1-19 (2019)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13640-019-0477-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13640-019-0477-9","pdf_url":"https://jivp-eurasipjournals.springeropen.com/track/pdf/10.1186/s13640-019-0477-9","source":{"id":"https://openalex.org/S153767265","display_name":"EURASIP Journal on Image and Video Processing","issn_l":"1687-5176","issn":["1687-5176","1687-5281"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"EURASIP Journal on Image and Video Processing","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6299999952316284,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1431837089","display_name":null,"funder_award_id":"546798","funder_id":"https://openalex.org/F4320313002","funder_display_name":"Shriners Hospitals for Children"},{"id":"https://openalex.org/G2606120906","display_name":null,"funder_award_id":"546798","funder_id":"https://openalex.org/F4320308297","funder_display_name":"Craig H. Neilsen Foundation"},{"id":"https://openalex.org/G3813360892","display_name":null,"funder_award_id":"85115","funder_id":"https://openalex.org/F4320313002","funder_display_name":"Shriners Hospitals for Children"}],"funders":[{"id":"https://openalex.org/F4320308297","display_name":"Craig H. Neilsen Foundation","ror":"https://ror.org/00k0a6x92"},{"id":"https://openalex.org/F4320313002","display_name":"Shriners Hospitals for Children","ror":"https://ror.org/03e8tm275"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2972597058.pdf","grobid_xml":"https://content.openalex.org/works/W2972597058.grobid-xml"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W211269454","https://openalex.org/W1500564636","https://openalex.org/W1548953334","https://openalex.org/W1964718454","https://openalex.org/W1971371900","https://openalex.org/W1973776312","https://openalex.org/W1989745698","https://openalex.org/W1990840758","https://openalex.org/W1991067911","https://openalex.org/W1995979455","https://openalex.org/W1999478155","https://openalex.org/W2004363688","https://openalex.org/W2015159529","https://openalex.org/W2018287600","https://openalex.org/W2021526653","https://openalex.org/W2030052367","https://openalex.org/W2036941842","https://openalex.org/W2066262692","https://openalex.org/W2067191022","https://openalex.org/W2067202138","https://openalex.org/W2072544504","https://openalex.org/W2081612234","https://openalex.org/W2083551778","https://openalex.org/W2084612041","https://openalex.org/W2094189399","https://openalex.org/W2100345701","https://openalex.org/W2102520856","https://openalex.org/W2102879940","https://openalex.org/W2104126397","https://openalex.org/W2105934661","https://openalex.org/W2106408537","https://openalex.org/W2110114082","https://openalex.org/W2113505469","https://openalex.org/W2118246710","https://openalex.org/W2119751842","https://openalex.org/W2121947440","https://openalex.org/W2135578953","https://openalex.org/W2139938665","https://openalex.org/W2145260877","https://openalex.org/W2188244809","https://openalex.org/W2200746124","https://openalex.org/W2209193152","https://openalex.org/W2219858099","https://openalex.org/W2237765446","https://openalex.org/W2275148408","https://openalex.org/W2318253906","https://openalex.org/W2345033116","https://openalex.org/W2397611611","https://openalex.org/W2478562489","https://openalex.org/W2586726574","https://openalex.org/W2586945779","https://openalex.org/W2613449306","https://openalex.org/W2737805764","https://openalex.org/W2765317832","https://openalex.org/W2795788516","https://openalex.org/W2810236609","https://openalex.org/W2889971208","https://openalex.org/W2921339025","https://openalex.org/W2922529617","https://openalex.org/W2953461088","https://openalex.org/W3101592665","https://openalex.org/W4210574564","https://openalex.org/W4245017765","https://openalex.org/W4250828854","https://openalex.org/W6632762468"],"related_works":["https://openalex.org/W2084086966","https://openalex.org/W1580685205","https://openalex.org/W2760382975","https://openalex.org/W2349716249","https://openalex.org/W2120941928","https://openalex.org/W1972035260","https://openalex.org/W2023861399","https://openalex.org/W1463864201","https://openalex.org/W3191856393","https://openalex.org/W2158788032"],"abstract_inverted_index":{"Abstract":[0],"Studying":[1],"animal":[2],"locomotion":[3],"improves":[4],"our":[5],"understanding":[6],"of":[7,15,23,31,35,39,42,76,131,143,152,167,183,195,217],"motor":[8,16],"control":[9],"and":[10,26,63,69,104,109,160,192,237],"aids":[11],"in":[12,211],"the":[13,28,40,74,85,101,153,165,181,184,190,196,239],"treatment":[14],"impairment.":[17],"Mice":[18],"are":[19,27],"a":[20,54,67,80,94,141,205,221,229],"premier":[21],"model":[22,29],"human":[24],"disease":[25],"system":[30],"choice":[32],"for":[33,49,208],"much":[34],"basic":[36],"neuroscience.":[37],"Placement":[38],"tips":[41,182],"appendages,":[43],"here":[44],"paws,":[45,86],"is":[46,56,224],"typically":[47],"critical":[48],"locomotion.":[50],"Tracking":[51],"paws":[52,75,106,166],"from":[53,189,220],"video":[55,223],"difficult,":[57],"however,":[58],"due":[59],"to":[60,72,83,90,99,114,123,163,175,234],"frequent":[61],"occlusions":[62],"collisions.":[64,117],"We":[65,78,156,226],"propose":[66],"method":[68,82,120,127],"provide":[70],"software":[71],"track":[73,164],"rodents.":[77,169],"use":[79],"superpixel-based":[81],"segment":[84],"direct":[87],"linear":[88],"transform":[89],"perform":[91],"3D":[92,95],"reconstruction,":[93],"Kalman":[96],"filter":[97],"(KF)":[98],"solve":[100],"matching":[102],"problem":[103],"label":[105],"across":[107],"frames,":[108],"spline":[110],"fits":[111],"through":[112],"time":[113],"resolve":[115],"common":[116],"The":[118,126,201],"automated":[119],"was":[121],"compared":[122],"manual":[124,135],"tracking.":[125],"had":[128],"an":[129,158],"average":[130],"2.54":[132],"mistakes":[133],"requiring":[134],"correction":[136],"per":[137],"1000":[138],"frames":[139],"with":[140],"maximum":[142],"5.29":[144],"possible":[145],"errors":[146],"while":[147],"these":[148],"values":[149],"were":[150],"estimates":[151],"expected":[154],"errors.":[155],"present":[157,228],"algorithm":[159,171,203],"its":[161],"implementation":[162],"running":[168],"This":[170],"can":[172,186],"be":[173,187],"applied":[174],"different":[176],"animals":[177],"as":[178,180],"long":[179],"legs":[185],"differentiated":[188],"background":[191],"other":[193],"parts":[194],"body":[197],"using":[198],"color":[199],"features.":[200],"presented":[202],"provides":[204],"robust":[206],"tool":[207],"future":[209],"studies":[210],"multiple":[212],"fields,":[213],"where":[214],"precise":[215],"quantification":[216],"locomotor":[218],"behavior":[219],"high-speed":[222],"required.":[225],"further":[227],"graphical":[230],"user":[231],"interface":[232],"(GUI)":[233],"track,":[235],"visualize,":[236],"edit":[238],"tracking":[240],"data.":[241]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
