{"id":"https://openalex.org/W2039321631","doi":"https://doi.org/10.1186/s13336-015-0017-5","title":"Variations in genome-wide RNAi screens: lessons from influenza research","display_name":"Variations in genome-wide RNAi screens: lessons from influenza research","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2039321631","doi":"https://doi.org/10.1186/s13336-015-0017-5","mag":"2039321631","pmid":"https://pubmed.ncbi.nlm.nih.gov/25745555"},"language":"en","primary_location":{"id":"doi:10.1186/s13336-015-0017-5","is_oa":false,"landing_page_url":"https://doi.org/10.1186/s13336-015-0017-5","pdf_url":null,"source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4350949","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073183014","display_name":"Yu\u2010Chi Chou","orcid":"https://orcid.org/0000-0002-0783-1339"},"institutions":[{"id":"https://openalex.org/I4210136969","display_name":"Institute of Molecular Biology, Academia Sinica","ror":"https://ror.org/047sbcx71","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210136969","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yu-Chi Chou","raw_affiliation_strings":["National RNAi Core Facility Platform, Academia Sinica, Taipei, 11529 Taiwan ; Institute of Molecular Biology, Academia Sinica, Taipei, 11529 Taiwan","National RNAi Core Facility Platform, Academia Sinica, Taipei 11529, Taiwan. Institute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National RNAi Core Facility Platform, Academia Sinica, Taipei, 11529 Taiwan ; Institute of Molecular Biology, Academia Sinica, Taipei, 11529 Taiwan","institution_ids":["https://openalex.org/I4210136969"]},{"raw_affiliation_string":"National RNAi Core Facility Platform, Academia Sinica, Taipei 11529, Taiwan. Institute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I84653119"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113497920","display_name":"Michael M. C. Lai","orcid":null},"institutions":[{"id":"https://openalex.org/I91807558","display_name":"National Cheng Kung University","ror":"https://ror.org/01b8kcc49","country_code":"TW","type":"education","lineage":["https://openalex.org/I91807558"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Michael Lai","raw_affiliation_strings":["National Cheng Kung University, Tainan City, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Cheng Kung University, Tainan City, Taiwan","institution_ids":["https://openalex.org/I91807558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100907780","display_name":"Yi-Chen Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210136969","display_name":"Institute of Molecular Biology, Academia Sinica","ror":"https://ror.org/047sbcx71","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210136969","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Yi-Chen Wu","raw_affiliation_strings":["National RNAi Core Facility Platform, Academia Sinica, Taipei, 11529 Taiwan","National RNAi Core Facility Platform, Academia Sinica, Taipei 11529, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National RNAi Core Facility Platform, Academia Sinica, Taipei, 11529 Taiwan","institution_ids":["https://openalex.org/I4210136969"]},{"raw_affiliation_string":"National RNAi Core Facility Platform, Academia Sinica, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I84653119"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065752549","display_name":"Nai-Chi Hsu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210136969","display_name":"Institute of Molecular Biology, Academia Sinica","ror":"https://ror.org/047sbcx71","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210136969","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Nai-Chi Hsu","raw_affiliation_strings":["National RNAi Core Facility Platform, Academia Sinica, Taipei, 11529 Taiwan","National RNAi Core Facility Platform, Academia Sinica, Taipei 11529, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National RNAi Core Facility Platform, Academia Sinica, Taipei, 11529 Taiwan","institution_ids":["https://openalex.org/I4210136969"]},{"raw_affiliation_string":"National RNAi Core Facility Platform, Academia Sinica, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I84653119"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113521425","display_name":"King-Song Jeng","orcid":null},"institutions":[{"id":"https://openalex.org/I4210136969","display_name":"Institute of Molecular Biology, Academia Sinica","ror":"https://ror.org/047sbcx71","country_code":"TW","type":"facility","lineage":["https://openalex.org/I4210136969","https://openalex.org/I84653119"]},{"id":"https://openalex.org/I84653119","display_name":"Academia Sinica","ror":"https://ror.org/05bxb3784","country_code":"TW","type":"facility","lineage":["https://openalex.org/I84653119"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"King-Song Jeng","raw_affiliation_strings":["National RNAi Core Facility Platform, Academia Sinica, Taipei, 11529 Taiwan ; Institute of Molecular Biology, Academia Sinica, Taipei, 11529 Taiwan","National RNAi Core Facility Platform, Academia Sinica, Taipei 11529, Taiwan. Institute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National RNAi Core Facility Platform, Academia Sinica, Taipei, 11529 Taiwan ; Institute of Molecular Biology, Academia Sinica, Taipei, 11529 Taiwan","institution_ids":["https://openalex.org/I4210136969"]},{"raw_affiliation_string":"National RNAi Core Facility Platform, Academia Sinica, Taipei 11529, Taiwan. Institute of Molecular Biology, Academia Sinica, Taipei 11529, Taiwan","institution_ids":["https://openalex.org/I84653119"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015452444","display_name":"Wen\u2010Chi Su","orcid":"https://orcid.org/0000-0001-9828-6542"},"institutions":[{"id":"https://openalex.org/I184693016","display_name":"China Medical University","ror":"https://ror.org/00v408z34","country_code":"TW","type":"education","lineage":["https://openalex.org/I184693016"]},{"id":"https://openalex.org/I4210126829","display_name":"China Medical University Hospital","ror":"https://ror.org/0368s4g32","country_code":"TW","type":"healthcare","lineage":["https://openalex.org/I4210126829"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Wen-Chi Su","raw_affiliation_strings":["Research Center for Emerging Viruses, China Medical University Hospital, Room 602, 6\u00a0F, Cancer Center Building, No. 6, Hsueh-Shih Road, Taichung, 40402 Taiwan ; China Medical University, Room 602, 6\u00a0F, Cancer Center Building, No. 6, Hsueh-Shih Road, Taichung, 40402 Taiwan","China Medical University, Taichung, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Emerging Viruses, China Medical University Hospital, Room 602, 6\u00a0F, Cancer Center Building, No. 6, Hsueh-Shih Road, Taichung, 40402 Taiwan ; China Medical University, Room 602, 6\u00a0F, Cancer Center Building, No. 6, Hsueh-Shih Road, Taichung, 40402 Taiwan","institution_ids":["https://openalex.org/I184693016","https://openalex.org/I4210126829"]},{"raw_affiliation_string":"China Medical University, Taichung, Taiwan","institution_ids":["https://openalex.org/I184693016"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.6529,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.83470298,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"5","issue":"1","first_page":"2","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna-interference","display_name":"RNA interference","score":0.8579674363136292},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.6511785387992859},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5283613801002502},{"id":"https://openalex.org/keywords/genetic-screen","display_name":"Genetic screen","score":0.5218490362167358},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5124261975288391},{"id":"https://openalex.org/keywords/small-hairpin-rna","display_name":"Small hairpin RNA","score":0.4457552433013916},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.41290855407714844},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2650594711303711},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.16695308685302734},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.15224653482437134}],"concepts":[{"id":"https://openalex.org/C166703698","wikidata":"https://www.wikidata.org/wiki/Q201993","display_name":"RNA interference","level":4,"score":0.8579674363136292},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6511785387992859},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5283613801002502},{"id":"https://openalex.org/C207177822","wikidata":"https://www.wikidata.org/wiki/Q5050812","display_name":"Genetic screen","level":4,"score":0.5218490362167358},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5124261975288391},{"id":"https://openalex.org/C190232843","wikidata":"https://www.wikidata.org/wiki/Q1950808","display_name":"Small hairpin RNA","level":4,"score":0.4457552433013916},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.41290855407714844},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2650594711303711},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.16695308685302734},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.15224653482437134}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13336-015-0017-5","is_oa":false,"landing_page_url":"https://doi.org/10.1186/s13336-015-0017-5","pdf_url":null,"source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25745555","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25745555","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of clinical bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3317402","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4350949","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:europepmc.org:3317402","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4350949","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1583085743","https://openalex.org/W1964016865","https://openalex.org/W1967241709","https://openalex.org/W1974168359","https://openalex.org/W1980562857","https://openalex.org/W1990545448","https://openalex.org/W2003988251","https://openalex.org/W2043698583","https://openalex.org/W2048534805","https://openalex.org/W2051465469","https://openalex.org/W2060173726","https://openalex.org/W2062722187","https://openalex.org/W2068880841","https://openalex.org/W2069017877","https://openalex.org/W2070924692","https://openalex.org/W2074410038","https://openalex.org/W2077620427","https://openalex.org/W2081526068","https://openalex.org/W2096423662","https://openalex.org/W2105468877","https://openalex.org/W2134376649","https://openalex.org/W2139119391","https://openalex.org/W2145848202","https://openalex.org/W2160103276","https://openalex.org/W2163018106","https://openalex.org/W2164609974","https://openalex.org/W2166719695"],"related_works":["https://openalex.org/W2139684752","https://openalex.org/W2289304380","https://openalex.org/W2119212619","https://openalex.org/W1862697881","https://openalex.org/W3142917394","https://openalex.org/W2135853980","https://openalex.org/W2409677235","https://openalex.org/W2437183497","https://openalex.org/W2418360204","https://openalex.org/W4210552082"],"abstract_inverted_index":{"Genome-wide":[0],"RNA":[1],"interference":[2],"(RNAi)":[3],"screening":[4,29,76,99],"is":[5],"an":[6,68],"emerging":[7],"and":[8,22,101],"powerful":[9],"technique":[10],"for":[11,46,104],"genetic":[12],"screens,":[13],"which":[14],"can":[15],"be":[16],"divided":[17],"into":[18],"arrayed":[19],"RNAi":[20,24,35],"screen":[21],"pooled":[23,108],"screen/selection":[25],"based":[26],"on":[27],"different":[28,56],"strategies.":[30],"To":[31],"date,":[32],"several":[33],"genome-wide":[34,98],"screens":[36,66],"have":[37],"been":[38],"successfully":[39],"performed":[40],"to":[41],"identify":[42],"host":[43,52],"factors":[44,53],"essential":[45],"influenza":[47,64],"virus":[48,65],"replication.":[49],"However,":[50],"the":[51,83,88,93,96],"identified":[54,86],"by":[55,87],"research":[57],"groups":[58],"are":[59],"not":[60],"always":[61],"consistent.":[62],"Taking":[63],"as":[67],"example,":[69],"we":[70],"found":[71],"that":[72],"a":[73,106],"number":[74],"of":[75],"parameters":[77],"may":[78],"directly":[79],"or":[80],"indirectly":[81],"influence":[82],"primary":[84],"hits":[85],"screens.":[89],"This":[90],"review":[91],"highlights":[92],"differences":[94],"among":[95],"published":[97],"approaches":[100],"offers":[102],"recommendations":[103],"performing":[105],"good":[107],"shRNA":[109],"screen/selection.":[110]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":4},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":3}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
