{"id":"https://openalex.org/W2104885832","doi":"https://doi.org/10.1186/s13336-015-0016-6","title":"K-core decomposition of a protein domain co-occurrence network reveals lower cancer mutation rates for interior cores","display_name":"K-core decomposition of a protein domain co-occurrence network reveals lower cancer mutation rates for interior cores","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2104885832","doi":"https://doi.org/10.1186/s13336-015-0016-6","mag":"2104885832","pmid":"https://pubmed.ncbi.nlm.nih.gov/25767694"},"language":"en","primary_location":{"id":"doi:10.1186/s13336-015-0016-6","is_oa":false,"landing_page_url":"https://doi.org/10.1186/s13336-015-0016-6","pdf_url":null,"source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4357223","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015146078","display_name":"Arnold I Emerson","orcid":null},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210152471","display_name":"Weill Cornell Medical College in Qatar","ror":"https://ror.org/05v5hg569","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210152471"]}],"countries":["QA","US"],"is_corresponding":true,"raw_author_name":"Arnold I Emerson","raw_affiliation_strings":["Department of Genetic Medicine, Weill Cornell Medical College, New York, NY USA ; Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, 24144 Qatar","Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Department of Genetic Medicine, Weill Cornell Medical College, New York, NY USA ; Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, 24144 Qatar","institution_ids":[]},{"raw_affiliation_string":"Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, Qatar","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210152471"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072675416","display_name":"Simeon Andrews","orcid":"https://orcid.org/0000-0003-4388-550X"},"institutions":[{"id":"https://openalex.org/I4210152471","display_name":"Weill Cornell Medical College in Qatar","ror":"https://ror.org/05v5hg569","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210152471"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["QA","US"],"is_corresponding":false,"raw_author_name":"Simeon Andrews","raw_affiliation_strings":["Department of Genetic Medicine, Weill Cornell Medical College, New York, NY USA ; Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, 24144 Qatar","Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Department of Genetic Medicine, Weill Cornell Medical College, New York, NY USA ; Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, 24144 Qatar","institution_ids":[]},{"raw_affiliation_string":"Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, Qatar","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210152471"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091725873","display_name":"Ikhlak Ahmed","orcid":"https://orcid.org/0000-0002-5753-9627"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210152471","display_name":"Weill Cornell Medical College in Qatar","ror":"https://ror.org/05v5hg569","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210152471"]}],"countries":["QA","US"],"is_corresponding":false,"raw_author_name":"Ikhlak Ahmed","raw_affiliation_strings":["Department of Genetic Medicine, Weill Cornell Medical College, New York, NY USA ; Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, 24144 Qatar","Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Department of Genetic Medicine, Weill Cornell Medical College, New York, NY USA ; Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, 24144 Qatar","institution_ids":[]},{"raw_affiliation_string":"Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, Qatar","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210152471"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017461121","display_name":"Thasni Karedath","orcid":"https://orcid.org/0000-0001-5482-5954"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210152471","display_name":"Weill Cornell Medical College in Qatar","ror":"https://ror.org/05v5hg569","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210152471"]}],"countries":["QA","US"],"is_corresponding":false,"raw_author_name":"Thasni Azis","raw_affiliation_strings":["Department of Genetic Medicine, Weill Cornell Medical College, New York, NY USA ; Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, 24144 Qatar","Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Department of Genetic Medicine, Weill Cornell Medical College, New York, NY USA ; Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, 24144 Qatar","institution_ids":[]},{"raw_affiliation_string":"Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, Qatar","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210152471"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081683584","display_name":"Joel A. Malek","orcid":"https://orcid.org/0000-0002-1516-8477"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210152471","display_name":"Weill Cornell Medical College in Qatar","ror":"https://ror.org/05v5hg569","country_code":"QA","type":"education","lineage":["https://openalex.org/I4210152471"]}],"countries":["QA","US"],"is_corresponding":false,"raw_author_name":"Joel A Malek","raw_affiliation_strings":["Department of Genetic Medicine, Weill Cornell Medical College, New York, NY USA ; Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, 24144 Qatar","Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, Qatar"],"affiliations":[{"raw_affiliation_string":"Department of Genetic Medicine, Weill Cornell Medical College, New York, NY USA ; Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, 24144 Qatar","institution_ids":[]},{"raw_affiliation_string":"Genomic Core, Weill Cornell Medical College in Qatar, Qatar Foundation, Doha, Qatar","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210152471"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5015146078"],"corresponding_institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4210152471"],"apc_list":null,"apc_paid":null,"fwci":0.3013,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.62097675,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"5","issue":"1","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9869999885559082,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9868000149726868,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6721188426017761},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5738279223442078},{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.5619727373123169},{"id":"https://openalex.org/keywords/proteome","display_name":"Proteome","score":0.5262547731399536},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5061337351799011},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.49025967717170715},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.46155214309692383},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.45707425475120544},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.44252803921699524},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.44122692942619324},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.43171077966690063},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.41907554864883423},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.41497573256492615},{"id":"https://openalex.org/keywords/human-proteome-project","display_name":"Human proteome project","score":0.410846084356308},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.3718768060207367},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.33738410472869873}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6721188426017761},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5738279223442078},{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.5619727373123169},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.5262547731399536},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5061337351799011},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.49025967717170715},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.46155214309692383},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.45707425475120544},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.44252803921699524},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.44122692942619324},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.43171077966690063},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.41907554864883423},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.41497573256492615},{"id":"https://openalex.org/C94795543","wikidata":"https://www.wikidata.org/wiki/Q3813754","display_name":"Human proteome project","level":4,"score":0.410846084356308},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.3718768060207367},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.33738410472869873},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13336-015-0016-6","is_oa":false,"landing_page_url":"https://doi.org/10.1186/s13336-015-0016-6","pdf_url":null,"source":{"id":"https://openalex.org/S141199735","display_name":"Journal of Clinical Bioinformatics","issn_l":"2043-9113","issn":["2043-9113"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Clinical Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25767694","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25767694","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of clinical bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3322225","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4357223","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:europepmc.org:3322225","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4357223","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7599999904632568}],"awards":[],"funders":[{"id":"https://openalex.org/F4320309815","display_name":"Qatar Foundation","ror":"https://ror.org/01cawbq05"},{"id":"https://openalex.org/F4320332513","display_name":"Weill Cornell Medical College","ror":"https://ror.org/02r109517"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":60,"referenced_works":["https://openalex.org/W1489878404","https://openalex.org/W1524662923","https://openalex.org/W1573780709","https://openalex.org/W1656674553","https://openalex.org/W1676999057","https://openalex.org/W1888358353","https://openalex.org/W1983202741","https://openalex.org/W1998569806","https://openalex.org/W2008620264","https://openalex.org/W2014284821","https://openalex.org/W2015631955","https://openalex.org/W2017154062","https://openalex.org/W2018045523","https://openalex.org/W2024872294","https://openalex.org/W2026241397","https://openalex.org/W2037729661","https://openalex.org/W2038169765","https://openalex.org/W2045131140","https://openalex.org/W2054051862","https://openalex.org/W2057046770","https://openalex.org/W2058803838","https://openalex.org/W2063252182","https://openalex.org/W2071006937","https://openalex.org/W2079394265","https://openalex.org/W2081931663","https://openalex.org/W2091841926","https://openalex.org/W2112792893","https://openalex.org/W2115700109","https://openalex.org/W2120627772","https://openalex.org/W2122407999","https://openalex.org/W2122884883","https://openalex.org/W2123884566","https://openalex.org/W2124637492","https://openalex.org/W2126609329","https://openalex.org/W2128930468","https://openalex.org/W2129834345","https://openalex.org/W2133465414","https://openalex.org/W2134525159","https://openalex.org/W2138155367","https://openalex.org/W2140349867","https://openalex.org/W2141885858","https://openalex.org/W2144885342","https://openalex.org/W2148606255","https://openalex.org/W2155173231","https://openalex.org/W2158217645","https://openalex.org/W2159675211","https://openalex.org/W2159715390","https://openalex.org/W2162381238","https://openalex.org/W2163480486","https://openalex.org/W2163798887","https://openalex.org/W2164479678","https://openalex.org/W2166458088","https://openalex.org/W2169088933","https://openalex.org/W3037530667","https://openalex.org/W3103786587","https://openalex.org/W4210290733","https://openalex.org/W4210400672","https://openalex.org/W4238448376","https://openalex.org/W4240237951","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W1975345997","https://openalex.org/W2146108849","https://openalex.org/W1967568262","https://openalex.org/W2950217159","https://openalex.org/W1994803330","https://openalex.org/W2011356131","https://openalex.org/W2015534509","https://openalex.org/W1994801829","https://openalex.org/W1994191737","https://openalex.org/W2104885832"],"abstract_inverted_index":{"Mutations":[0],"and":[1,41],"domain":[2],"co-occurrence":[3],"networks":[4],"provide":[5],"a":[6,16,24,37],"framework":[7],"for":[8],"understanding":[9],"hierarchal":[10],"designs":[11],"in":[12,29,46],"protein":[13,27,43],"function":[14],"from":[15],"network":[17],"perspective.":[18],"This":[19],"study":[20],"provides":[21],"evidence":[22],"that":[23,42],"majority":[25],"of":[26,33,50],"domains":[28,44],"the":[30,34,47,51,57],"inner":[31],"core":[32],"DCN":[35],"have":[36],"lower":[38],"mutation":[39],"frequency":[40],"present":[45],"peripheral":[48],"regions":[49],"k-core":[52],"contribute":[53,62],"more":[54],"heavily":[55],"to":[56,64],"disease.":[58],"These":[59],"findings":[60],"may":[61],"further":[63],"drug":[65],"development.":[66]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
