{"id":"https://openalex.org/W4413115446","doi":"https://doi.org/10.1186/s13326-025-00336-3","title":"BASIL DB: bioactive semantic integration and linking database","display_name":"BASIL DB: bioactive semantic integration and linking database","publication_year":2025,"publication_date":"2025-08-13","ids":{"openalex":"https://openalex.org/W4413115446","doi":"https://doi.org/10.1186/s13326-025-00336-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/40804424"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-025-00336-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-025-00336-3","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13326-025-00336-3.pdf","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s13326-025-00336-3.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044309463","display_name":"David R. Jackson","orcid":"https://orcid.org/0000-0003-4913-5902"},"institutions":[{"id":"https://openalex.org/I55106644","display_name":"Amsterdam University of Applied Sciences","ror":"https://ror.org/00y2z2s03","country_code":"NL","type":"education","lineage":["https://openalex.org/I55106644"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"David Jackson","raw_affiliation_strings":["University of Amsterdam, Amsterdam, The Netherlands. d.i.jackson@uva.nl"],"affiliations":[{"raw_affiliation_string":"University of Amsterdam, Amsterdam, The Netherlands. d.i.jackson@uva.nl","institution_ids":["https://openalex.org/I887064364","https://openalex.org/I55106644"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034924491","display_name":"Paul Groth","orcid":"https://orcid.org/0000-0003-0183-6910"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Paul Groth","raw_affiliation_strings":["University of Amsterdam, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"University of Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008534205","display_name":"Hazar Harmouch","orcid":"https://orcid.org/0000-0001-9967-5347"},"institutions":[{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Hazar Harmouch","raw_affiliation_strings":["University of Amsterdam, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"University of Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5044309463"],"corresponding_institution_ids":["https://openalex.org/I55106644","https://openalex.org/I887064364"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":3.8,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.9344184,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"16","issue":"1","first_page":"14","last_page":"14"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13984","display_name":"Nutrition, Genetics, and Disease","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13984","display_name":"Nutrition, Genetics, and Disease","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8139379024505615},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.524029552936554},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.5115340948104858},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.502737283706665},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.46652254462242126},{"id":"https://openalex.org/keywords/data-extraction","display_name":"Data extraction","score":0.441620796918869},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4226023554801941},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.41471874713897705},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3463495671749115},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.3294271230697632},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1877577006816864},{"id":"https://openalex.org/keywords/medline","display_name":"MEDLINE","score":0.14849919080734253}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8139379024505615},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.524029552936554},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.5115340948104858},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.502737283706665},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.46652254462242126},{"id":"https://openalex.org/C2777466982","wikidata":"https://www.wikidata.org/wiki/Q5227287","display_name":"Data extraction","level":3,"score":0.441620796918869},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4226023554801941},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.41471874713897705},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3463495671749115},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.3294271230697632},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1877577006816864},{"id":"https://openalex.org/C2779473830","wikidata":"https://www.wikidata.org/wiki/Q1540899","display_name":"MEDLINE","level":2,"score":0.14849919080734253},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s13326-025-00336-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-025-00336-3","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13326-025-00336-3.pdf","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:40804424","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40804424","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:dare.uva.nl:openaire_cris_publications/dfaabdd6-d912-4638-bf71-fbc41e8e213e","is_oa":false,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/basil-db(dfaabdd6-d912-4638-bf71-fbc41e8e213e).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Jackson, D, Groth, P & Harmouch, H 2025, 'BASIL DB : bioactive semantic integration and linking database', Journal of Biomedical Semantics, vol. 16, 14. https://doi.org/10.1186/s13326-025-00336-3","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:dare.uva.nl:publications/dfaabdd6-d912-4638-bf71-fbc41e8e213e","is_oa":false,"landing_page_url":"https://hdl.handle.net/11245.1/dfaabdd6-d912-4638-bf71-fbc41e8e213e","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Jackson, D, Groth, P & Harmouch, H 2025, 'BASIL DB : bioactive semantic integration and linking database', Journal of Biomedical Semantics, vol. 16, 14. https://doi.org/10.1186/s13326-025-00336-3","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:95362a5ea3814203ae0b5faf9d24928d","is_oa":true,"landing_page_url":"https://doaj.org/article/95362a5ea3814203ae0b5faf9d24928d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 16, Iss 1, Pp 1-14 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12351831","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12351831","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-025-00336-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-025-00336-3","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13326-025-00336-3.pdf","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4413115446.pdf","grobid_xml":"https://content.openalex.org/works/W4413115446.grobid-xml"},"referenced_works_count":44,"referenced_works":["https://openalex.org/W1481160276","https://openalex.org/W1548494790","https://openalex.org/W1593082823","https://openalex.org/W1598602811","https://openalex.org/W1976316416","https://openalex.org/W2010605118","https://openalex.org/W2037837918","https://openalex.org/W2063545170","https://openalex.org/W2065380210","https://openalex.org/W2096541451","https://openalex.org/W2104893499","https://openalex.org/W2105551154","https://openalex.org/W2112364856","https://openalex.org/W2121628382","https://openalex.org/W2137417655","https://openalex.org/W2155131137","https://openalex.org/W2157823046","https://openalex.org/W2159583324","https://openalex.org/W2184378182","https://openalex.org/W2294385208","https://openalex.org/W2472748033","https://openalex.org/W2475260156","https://openalex.org/W2509754533","https://openalex.org/W2556913740","https://openalex.org/W2569142897","https://openalex.org/W2602562996","https://openalex.org/W2767733492","https://openalex.org/W3010761615","https://openalex.org/W3033896008","https://openalex.org/W3155522128","https://openalex.org/W3173386337","https://openalex.org/W4225123286","https://openalex.org/W4281560486","https://openalex.org/W4318983406","https://openalex.org/W4327947056","https://openalex.org/W4376472423","https://openalex.org/W4384304901","https://openalex.org/W4384497991","https://openalex.org/W4387950730","https://openalex.org/W4399024046","https://openalex.org/W4400596950","https://openalex.org/W4402670226","https://openalex.org/W4403500636","https://openalex.org/W4408226143"],"related_works":["https://openalex.org/W2701062589","https://openalex.org/W4308914582","https://openalex.org/W4388126069","https://openalex.org/W2389214306","https://openalex.org/W2965083567","https://openalex.org/W4235240664","https://openalex.org/W2914128081","https://openalex.org/W2393746579","https://openalex.org/W2126133844","https://openalex.org/W2155603949"],"abstract_inverted_index":{"Users":[0],"can":[1],"access":[2],"and":[3,11],"explore":[4],"the":[5,13],"data":[6],"via":[7,16],"https://basil-db.github.io/info.html":[8],"or":[9],"fork":[10],"run":[12],"respective":[14],"script":[15],"https://github.com/basil-db/script":[17],".":[18]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
