{"id":"https://openalex.org/W4406092545","doi":"https://doi.org/10.1186/s13326-025-00333-6","title":"A fourfold pathogen reference ontology suite","display_name":"A fourfold pathogen reference ontology suite","publication_year":2025,"publication_date":"2025-07-09","ids":{"openalex":"https://openalex.org/W4406092545","doi":"https://doi.org/10.1186/s13326-025-00333-6","pmid":"https://pubmed.ncbi.nlm.nih.gov/40313667"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-025-00333-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-025-00333-6","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-025-00333-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-025-00333-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018629984","display_name":"John Beverley","orcid":"https://orcid.org/0000-0002-1118-1738"},"institutions":[{"id":"https://openalex.org/I4210132958","display_name":"Buffalo Psychiatric Center","ror":"https://ror.org/042hsjs98","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210132958"]},{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"John Beverley","raw_affiliation_strings":["National Center for Ontological Research, Buffalo, USA. johnbeve@buffalo.edu","University at Buffalo, State University of New York, Buffalo, USA. johnbeve@buffalo.edu"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Ontological Research, Buffalo, USA. johnbeve@buffalo.edu","institution_ids":["https://openalex.org/I4210132958"]},{"raw_affiliation_string":"University at Buffalo, State University of New York, Buffalo, USA. johnbeve@buffalo.edu","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026938306","display_name":"Shane Babcock","orcid":"https://orcid.org/0000-0003-0798-114X"},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I4210112676","display_name":"Koo & Associates International (United States)","ror":"https://ror.org/01v392555","country_code":"US","type":"company","lineage":["https://openalex.org/I4210112676"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shane Babcock","raw_affiliation_strings":["KadSci LLC, Fairfax, USA","National Center for Ontological Research, Buffalo, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KadSci LLC, Fairfax, USA","institution_ids":["https://openalex.org/I4210112676"]},{"raw_affiliation_string":"National Center for Ontological Research, Buffalo, USA","institution_ids":["https://openalex.org/I1304557061"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5096099590","display_name":"Carter Benson","orcid":null},"institutions":[{"id":"https://openalex.org/I4210156279","display_name":"Calspan-University of Buffalo Research Center","ror":"https://ror.org/05hb9gz45","country_code":"US","type":"education","lineage":["https://openalex.org/I4210156279"]},{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carter Benson","raw_affiliation_strings":["CUBRC, Inc, Buffalo, USA","University at Buffalo, State University of New York, Buffalo, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CUBRC, Inc, Buffalo, USA","institution_ids":["https://openalex.org/I4210156279"]},{"raw_affiliation_string":"University at Buffalo, State University of New York, Buffalo, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5096099093","display_name":"Giacomo De Colle","orcid":null},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Giacomo De Colle","raw_affiliation_strings":["National Center for Ontological Research, Buffalo, USA","University at Buffalo, State University of New York, Buffalo, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Ontological Research, Buffalo, USA","institution_ids":["https://openalex.org/I1304557061"]},{"raw_affiliation_string":"University at Buffalo, State University of New York, Buffalo, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061618094","display_name":"Sidney Cohen","orcid":"https://orcid.org/0000-0003-4255-3351"},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sydney Cohen","raw_affiliation_strings":["National Center for Ontological Research, Buffalo, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Ontological Research, Buffalo, USA","institution_ids":["https://openalex.org/I1304557061"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084833749","display_name":"Alexander D. Diehl","orcid":"https://orcid.org/0000-0001-9990-8331"},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander D. Diehl","raw_affiliation_strings":["National Center for Ontological Research, Buffalo, USA","University at Buffalo, State University of New York, Buffalo, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Ontological Research, Buffalo, USA","institution_ids":["https://openalex.org/I1304557061"]},{"raw_affiliation_string":"University at Buffalo, State University of New York, Buffalo, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117409137","display_name":"Ram A N R Challa","orcid":null},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ram A. N. R. Challa","raw_affiliation_strings":["University at Buffalo, State University of New York, Buffalo, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University at Buffalo, State University of New York, Buffalo, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5117409138","display_name":"Rachel A. Mavrovich","orcid":null},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rachel A. Mavrovich","raw_affiliation_strings":["National Center for Ontological Research, Buffalo, USA","University at Buffalo, State University of New York, Buffalo, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Ontological Research, Buffalo, USA","institution_ids":["https://openalex.org/I1304557061"]},{"raw_affiliation_string":"University at Buffalo, State University of New York, Buffalo, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5118872758","display_name":"Joshua Billig","orcid":null},"institutions":[{"id":"https://openalex.org/I1304557061","display_name":"National Center for Toxicological Research","ror":"https://ror.org/05jmhh281","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1304557061","https://openalex.org/I1320320070"]},{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua Billig","raw_affiliation_strings":["National Center for Ontological Research, Buffalo, USA","University at Buffalo, State University of New York, Buffalo, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Ontological Research, Buffalo, USA","institution_ids":["https://openalex.org/I1304557061"]},{"raw_affiliation_string":"University at Buffalo, State University of New York, Buffalo, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043564973","display_name":"Anthony Huffman","orcid":"https://orcid.org/0000-0002-0576-550X"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210140958","display_name":"Ann Arbor Center for Independent Living","ror":"https://ror.org/045pcya52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140958"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anthony Huffman","raw_affiliation_strings":["University of Michigan-Ann Arbor, Ann Arbor, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Michigan-Ann Arbor, Ann Arbor, USA","institution_ids":["https://openalex.org/I4210140958","https://openalex.org/I27837315"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024742201","display_name":"Yongqun He","orcid":"https://orcid.org/0000-0001-9189-9661"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210140958","display_name":"Ann Arbor Center for Independent Living","ror":"https://ror.org/045pcya52","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210140958"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yongqun He","raw_affiliation_strings":["University of Michigan-Ann Arbor, Ann Arbor, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Michigan-Ann Arbor, Ann Arbor, USA","institution_ids":["https://openalex.org/I4210140958","https://openalex.org/I27837315"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5018629984"],"corresponding_institution_ids":["https://openalex.org/I4210132958","https://openalex.org/I63190737"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0019563,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"16","issue":"1","first_page":"12","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6796000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6796000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.05719999969005585,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.05119999870657921,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.8659595847129822},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8123785257339478},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5116875171661377},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.45073428750038147},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4040085971355438},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.37583374977111816}],"concepts":[{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.8659595847129822},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8123785257339478},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5116875171661377},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.45073428750038147},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4040085971355438},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.37583374977111816},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C166957645","wikidata":"https://www.wikidata.org/wiki/Q23498","display_name":"Archaeology","level":1,"score":0.0},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.0}],"mesh":[],"locations_count":7,"locations":[{"id":"doi:10.1186/s13326-025-00333-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-025-00333-6","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-025-00333-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:40313667","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40313667","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"ArXiv","raw_type":null},{"id":"pmid:40635066","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40635066","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:arXiv.org:2501.01454","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2501.01454","pdf_url":"https://arxiv.org/pdf/2501.01454","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:doaj.org/article:ff9ebb7d9a554977b6240d2257254826","is_oa":true,"landing_page_url":"https://doaj.org/article/ff9ebb7d9a554977b6240d2257254826","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 16, Iss 1, Pp 1-20 (2025)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:12045396","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12045396","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ArXiv","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:12239493","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12239493","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-025-00333-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-025-00333-6","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-025-00333-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G613429801","display_name":null,"funder_award_id":"U24AI171008","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G8526910669","display_name":null,"funder_award_id":"U24AI171008","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4406092545.pdf","grobid_xml":"https://content.openalex.org/works/W4406092545.grobid-xml"},"referenced_works_count":71,"referenced_works":["https://openalex.org/W176560070","https://openalex.org/W1517114175","https://openalex.org/W1574496698","https://openalex.org/W1593611264","https://openalex.org/W1802346448","https://openalex.org/W1935434993","https://openalex.org/W1999773781","https://openalex.org/W2003564377","https://openalex.org/W2021074129","https://openalex.org/W2033377040","https://openalex.org/W2061177996","https://openalex.org/W2064370471","https://openalex.org/W2066958539","https://openalex.org/W2090577544","https://openalex.org/W2091671824","https://openalex.org/W2095602317","https://openalex.org/W2097877306","https://openalex.org/W2105836514","https://openalex.org/W2107283318","https://openalex.org/W2113142309","https://openalex.org/W2114938008","https://openalex.org/W2116034137","https://openalex.org/W2130416870","https://openalex.org/W2135182325","https://openalex.org/W2142970879","https://openalex.org/W2154829072","https://openalex.org/W2163827272","https://openalex.org/W2395471180","https://openalex.org/W2416576459","https://openalex.org/W2468014659","https://openalex.org/W2480003070","https://openalex.org/W2511855896","https://openalex.org/W2531883117","https://openalex.org/W2540149843","https://openalex.org/W2555756618","https://openalex.org/W2557399158","https://openalex.org/W2739674022","https://openalex.org/W2750888071","https://openalex.org/W2753619282","https://openalex.org/W2903298154","https://openalex.org/W2950595506","https://openalex.org/W2952582118","https://openalex.org/W2965518110","https://openalex.org/W2972515073","https://openalex.org/W2990613867","https://openalex.org/W2995850610","https://openalex.org/W3001456238","https://openalex.org/W3008394341","https://openalex.org/W3009912996","https://openalex.org/W3018965582","https://openalex.org/W3035434194","https://openalex.org/W3107815298","https://openalex.org/W3117220677","https://openalex.org/W3206983685","https://openalex.org/W3212844814","https://openalex.org/W3214608846","https://openalex.org/W4224037213","https://openalex.org/W4244542070","https://openalex.org/W4306980360","https://openalex.org/W4321221590","https://openalex.org/W4380871648","https://openalex.org/W4383334279","https://openalex.org/W4387695836","https://openalex.org/W4388637778","https://openalex.org/W4395463966","https://openalex.org/W4400214517","https://openalex.org/W4407635770","https://openalex.org/W6607911452","https://openalex.org/W6629430887","https://openalex.org/W6925048345","https://openalex.org/W6931303648"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4231704780","https://openalex.org/W2083794993","https://openalex.org/W352609212","https://openalex.org/W4404692318","https://openalex.org/W4200340037","https://openalex.org/W1511772879","https://openalex.org/W4379115841","https://openalex.org/W608917066","https://openalex.org/W4283652261"],"abstract_inverted_index":{"BACKGROUND:":[0],"Infectious":[1,24,35,93,98,103,109],"diseases":[2],"remain":[3],"a":[4,16],"critical":[5],"global":[6],"health":[7],"challenge,":[8],"and":[9,28,43,59,76,107,124,127,135,146,168,183,191],"the":[10,33,54,120,153],"integration":[11],"of":[12,90,129,140,148],"standardized":[13],"ontologies":[14,143,151,171],"plays":[15],"vital":[17],"role":[18],"in":[19,175],"managing":[20],"related":[21,46],"data.":[22],"The":[23,50,81,138],"Disease":[25,36,94,99,104,110],"Ontology":[26,37,95,100,105,111],"(IDO)":[27],"its":[29,60],"extensions,":[30,167],"such":[31],"as":[32],"Coronavirus":[34],"(CIDO),":[38],"are":[39],"essential":[40],"for":[41,56,186],"organizing":[42],"disseminating":[44],"information":[45],"to":[47,68,73,86,131,180],"infectious":[48,78,149],"diseases.":[49,79],"COVID-19":[51],"pandemic":[52],"highlighted":[53],"need":[55,67],"updating":[57],"IDO":[58,70,114,130,154],"virus-specific":[61],"extensions.":[62],"There":[63],"is":[64,84,115],"an":[65],"additional":[66],"update":[69],"extensions":[71,89,128],"specific":[72],"bacteria,":[74],"fungus,":[75],"parasite":[77],"METHODS:":[80],"\"hub-and-spoke\"":[82],"methodology":[83],"adopted":[85],"generate":[87],"pathogen-specific":[88,141],"IDO:":[91],"Virus":[92],"(VIDO),":[96],"Bacteria":[97],"(BIDO),":[101],"Mycosis":[102],"(MIDO),":[106],"Parasite":[108],"(PIDO).":[112],"RESULTS:":[113],"introduced":[116],"before":[117],"reporting":[118],"on":[119,160,173],"scopes,":[121],"major":[122],"classes":[123],"relations,":[125],"applications":[126],"VIDO,":[132],"BIDO,":[133],"MIDO,":[134],"PIDO.":[136],"CONCLUSIONS:":[137],"creation":[139],"reference":[142],"advances":[144],"modularization":[145],"reusability":[147],"disease":[150],"within":[152],"ecosystem.":[155],"Future":[156],"work":[157],"will":[158],"focus":[159],"further":[161],"refining":[162],"these":[163],"ontologies,":[164],"creating":[165],"new":[166],"developing":[169],"application":[170],"based":[172],"them,":[174],"line":[176],"with":[177],"ongoing":[178],"efforts":[179],"standardize":[181],"biological":[182],"biomedical":[184],"terminologies":[185],"improved":[187],"data":[188],"sharing,":[189],"quality,":[190],"analysis.":[192]},"counts_by_year":[],"updated_date":"2026-06-04T09:04:59.091469","created_date":"2025-01-07T00:00:00"}
