{"id":"https://openalex.org/W4405856124","doi":"https://doi.org/10.1186/s13326-024-00321-2","title":"FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis","display_name":"FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis","publication_year":2024,"publication_date":"2024-12-28","ids":{"openalex":"https://openalex.org/W4405856124","doi":"https://doi.org/10.1186/s13326-024-00321-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/39732721"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-024-00321-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00321-2","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00321-2","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00321-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085999179","display_name":"Xiaofeng Liao","orcid":"https://orcid.org/0000-0002-4706-1084"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]},{"id":"https://openalex.org/I4210109357","display_name":"Radboud Institute for Molecular Life Sciences","ror":"https://ror.org/01yb10j39","country_code":"NL","type":"facility","lineage":["https://openalex.org/I145872427","https://openalex.org/I4210109357"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Xiaofeng Liao","raw_affiliation_strings":["Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands. XiaoFeng.Liao@radboudumc.nl","Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands. XiaoFeng.Liao@radboudumc.nl","institution_ids":["https://openalex.org/I2802934949","https://openalex.org/I145872427","https://openalex.org/I4210109357"]},{"raw_affiliation_string":"Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000925202","display_name":"Thomas H. A. Ederveen","orcid":"https://orcid.org/0000-0003-0068-1275"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Thomas\u00a0H.A. Ederveen","raw_affiliation_strings":["Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007204493","display_name":"Anna Niehues","orcid":"https://orcid.org/0000-0002-9839-5439"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Anna Niehues","raw_affiliation_strings":["Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018126227","display_name":"Casper de Visser","orcid":null},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Casper de\u00a0Visser","raw_affiliation_strings":["Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115600244","display_name":"Junda Huang","orcid":"https://orcid.org/0000-0002-1246-5759"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Junda Huang","raw_affiliation_strings":["Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114627646","display_name":"Firdaws Badmus","orcid":null},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Firdaws Badmus","raw_affiliation_strings":["Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027466155","display_name":"Cenna Doornbos","orcid":"https://orcid.org/0000-0002-0613-3651"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Cenna Doornbos","raw_affiliation_strings":["Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001428555","display_name":"Yuliia Orlova","orcid":"https://orcid.org/0000-0002-4580-5609"},"institutions":[{"id":"https://openalex.org/I4210090210","display_name":"SURF","ror":"https://ror.org/009vhk114","country_code":"NL","type":"other","lineage":["https://openalex.org/I4210090210"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Yuliia Orlova","raw_affiliation_strings":["SURF, Science Park 140, 1098 XG, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"SURF, Science Park 140, 1098 XG, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I4210090210"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088310443","display_name":"Purva Kulkarni","orcid":"https://orcid.org/0000-0002-4681-4582"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Purva Kulkarni","raw_affiliation_strings":["Department of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands","Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands","Translational Metabolic Laboratory, Department of Laboratory Medicine, Radboud University Medical Center, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]},{"raw_affiliation_string":"Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]},{"raw_affiliation_string":"Translational Metabolic Laboratory, Department of Laboratory Medicine, Radboud University Medical Center, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033039802","display_name":"K. Joeri van der Velde","orcid":"https://orcid.org/0000-0002-0934-8375"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"K. Joeri van\u00a0der\u00a0Velde","raw_affiliation_strings":["Genomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Genomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052368642","display_name":"Morris A. Swertz","orcid":"https://orcid.org/0000-0002-0979-3401"},"institutions":[{"id":"https://openalex.org/I1334415907","display_name":"University Medical Center Groningen","ror":"https://ror.org/03cv38k47","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I1334415907"]},{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Morris A. Swertz","raw_affiliation_strings":["Genomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Genomics Coordination Center, University of Groningen and University Medical Center Groningen, Groningen, The Netherlands","institution_ids":["https://openalex.org/I1334415907","https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013296732","display_name":"Martin J. Brandt","orcid":"https://orcid.org/0000-0001-6197-9249"},"institutions":[{"id":"https://openalex.org/I4210090210","display_name":"SURF","ror":"https://ror.org/009vhk114","country_code":"NL","type":"other","lineage":["https://openalex.org/I4210090210"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Martin Brandt","raw_affiliation_strings":["SURF, Science Park 140, 1098 XG, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"SURF, Science Park 140, 1098 XG, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I4210090210"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003213355","display_name":"Alain J. van Gool","orcid":"https://orcid.org/0000-0003-0010-5286"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Alain J. van\u00a0Gool","raw_affiliation_strings":["Department of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands","Translational Metabolic Laboratory, Department of Laboratory Medicine, Radboud University Medical Center, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Department of Human Genetics, Radboud University Medical Center, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]},{"raw_affiliation_string":"Translational Metabolic Laboratory, Department of Laboratory Medicine, Radboud University Medical Center, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021033668","display_name":"Peter A.C. \u2019t Hoen","orcid":"https://orcid.org/0000-0003-4450-3112"},"institutions":[{"id":"https://openalex.org/I145872427","display_name":"Radboud University Nijmegen","ror":"https://ror.org/016xsfp80","country_code":"NL","type":"education","lineage":["https://openalex.org/I145872427"]},{"id":"https://openalex.org/I2802934949","display_name":"Radboud University Medical Center","ror":"https://ror.org/05wg1m734","country_code":"NL","type":"funder","lineage":["https://openalex.org/I2802934949"]},{"id":"https://openalex.org/I4210109357","display_name":"Radboud Institute for Molecular Life Sciences","ror":"https://ror.org/01yb10j39","country_code":"NL","type":"facility","lineage":["https://openalex.org/I145872427","https://openalex.org/I4210109357"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Peter A. C. \u2019t Hoen","raw_affiliation_strings":["Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands. Peter-Bram.tHoen@radboudumc.nl","Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands. Peter-Bram.tHoen@radboudumc.nl","institution_ids":["https://openalex.org/I2802934949","https://openalex.org/I145872427","https://openalex.org/I4210109357"]},{"raw_affiliation_string":"Medical BioSciences Department, Radboud University Medical Center, Nijmegen, The Netherlands","institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":14,"corresponding_author_ids":["https://openalex.org/A5085999179"],"corresponding_institution_ids":["https://openalex.org/I145872427","https://openalex.org/I2802934949","https://openalex.org/I4210109357"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":2.2903,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.91513455,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"15","issue":"1","first_page":"20","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9524000287055969,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7419120073318481},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.7399973273277283},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.7211970090866089},{"id":"https://openalex.org/keywords/profiling","display_name":"Profiling (computer programming)","score":0.6279284954071045},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.5870429277420044},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5597746968269348},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.555279552936554},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.47263428568840027},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3859124183654785},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.22095957398414612},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.20979851484298706},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.15805044770240784}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7419120073318481},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.7399973273277283},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.7211970090866089},{"id":"https://openalex.org/C187191949","wikidata":"https://www.wikidata.org/wiki/Q1138496","display_name":"Profiling (computer programming)","level":2,"score":0.6279284954071045},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.5870429277420044},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5597746968269348},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.555279552936554},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.47263428568840027},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3859124183654785},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.22095957398414612},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.20979851484298706},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.15805044770240784},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000095028","descriptor_name":"Multiomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016494","descriptor_name":"Computer Security","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016494","descriptor_name":"Computer Security","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016494","descriptor_name":"Computer Security","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016494","descriptor_name":"Computer Security","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016494","descriptor_name":"Computer Security","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016494","descriptor_name":"Computer Security","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016494","descriptor_name":"Computer Security","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s13326-024-00321-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00321-2","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00321-2","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:39732721","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39732721","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pure.rug.nl:openaire/0c80b26e-9159-469c-82d6-24b9b54c44c8","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/0c80b26e-9159-469c-82d6-24b9b54c44c8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Liao, X, Ederveen, TH A, Niehues, A, de\u00a0Visser, C, Huang, J, Badmus, F, Doornbos, C, Orlova, Y, Kulkarni, P, van\u00a0der\u00a0Velde, K J, Swertz, M A, Brandt, M, van\u00a0Gool, A J & \u2019t Hoen, P A C 2024, 'FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis', Journal of Biomedical Semantics, vol. 15, 20. https://doi.org/10.1186/s13326-024-00321-2","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:11681678","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11681678","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11681678/pdf/13326_2024_Article_321.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:repository.ubn.ru.nl:2066/314601","is_oa":true,"landing_page_url":"https://hdl.handle.net/2066/314601","pdf_url":"https://repository.ubn.ru.nl//bitstream/handle/2066/314601/314601.pdf","source":{"id":"https://openalex.org/S4306401067","display_name":"Radboud Repository (Radboud University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I145872427","host_organization_name":"Radboud University Nijmegen","host_organization_lineage":["https://openalex.org/I145872427"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article / Letter to editor"},{"id":"pmh:oai:doaj.org/article:dd27f282dab0471fb5010c942b8435db","is_oa":true,"landing_page_url":"https://doaj.org/article/dd27f282dab0471fb5010c942b8435db","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 15, Iss 1, Pp 1-13 (2024)","raw_type":"article"},{"id":"pmh:oai:pure.rug.nl:publications/0c80b26e-9159-469c-82d6-24b9b54c44c8","is_oa":true,"landing_page_url":"https://hdl.handle.net/11370/0c80b26e-9159-469c-82d6-24b9b54c44c8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Liao, X, Ederveen, TH A, Niehues, A, de\u00a0Visser, C, Huang, J, Badmus, F, Doornbos, C, Orlova, Y, Kulkarni, P, van\u00a0der\u00a0Velde, K J, Swertz, M A, Brandt, M, van\u00a0Gool, A J & \u2019t Hoen, P A C 2024, 'FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis', Journal of Biomedical Semantics, vol. 15, 20. https://doi.org/10.1186/s13326-024-00321-2","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/s13326-024-00321-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00321-2","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00321-2","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6499999761581421}],"awards":[{"id":"https://openalex.org/G1870705154","display_name":null,"funder_award_id":"X-omics","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G265113304","display_name":null,"funder_award_id":"825575","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G3828550083","display_name":null,"funder_award_id":"17703","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G6009445997","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G629491556","display_name":null,"funder_award_id":"(NWO)","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"},{"id":"https://openalex.org/G7555409977","display_name":null,"funder_award_id":"184.034.019","funder_id":"https://openalex.org/F4320321800","funder_display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek"}],"funders":[{"id":"https://openalex.org/F4320321800","display_name":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek","ror":"https://ror.org/04jsz6e67"},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4405856124.pdf","grobid_xml":"https://content.openalex.org/works/W4405856124.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W197543658","https://openalex.org/W1957272438","https://openalex.org/W2128349406","https://openalex.org/W2141297584","https://openalex.org/W2302501749","https://openalex.org/W2558342853","https://openalex.org/W2613847904","https://openalex.org/W2886942038","https://openalex.org/W2889181799","https://openalex.org/W2983728903","https://openalex.org/W3095016916","https://openalex.org/W3110891437","https://openalex.org/W3159002838","https://openalex.org/W3199620625","https://openalex.org/W4220796461","https://openalex.org/W4223579703","https://openalex.org/W4283716497","https://openalex.org/W4290034077","https://openalex.org/W4290988679","https://openalex.org/W4293105950","https://openalex.org/W4388539880"],"related_works":["https://openalex.org/W2058118494","https://openalex.org/W2392768766","https://openalex.org/W2924366642","https://openalex.org/W4392558563","https://openalex.org/W3159101980","https://openalex.org/W3173875945","https://openalex.org/W2966125521","https://openalex.org/W3003192283","https://openalex.org/W2996736193","https://openalex.org/W2909364225"],"abstract_inverted_index":{"The":[0],"Netherlands":[1],"X-omics":[2,19],"Initiative":[3],"is":[4],"a":[5],"National":[6],"Roadmap":[7],"Large-Scale":[8],"Research":[9],"Infrastructure":[10],"aiming":[11],"for":[12],"efficient":[13],"integration":[14],"of":[15,52],"data":[16,46,59,68],"generated":[17],"within":[18],"and":[20,35,40,47,55,63,70],"external":[21],"datasets.":[22],"To":[23],"facilitate":[24,50],"this,":[25],"we":[26],"developed":[27],"the":[28,37,65],"FAIR":[29,38,45],"Data":[30],"Cube":[31],"(FDCube),":[32],"which":[33],"adopts":[34],"applies":[36],"principles":[39],"helps":[41],"researchers":[42],"to":[43,49,56],"create":[44],"metadata,":[48],"re-use":[51],"their":[53,58],"data,":[54],"make":[57],"analysis":[60],"workflows":[61],"transparent,":[62],"in":[64],"meantime":[66],"ensure":[67],"security":[69],"privacy.":[71]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}