{"id":"https://openalex.org/W4403458599","doi":"https://doi.org/10.1186/s13326-024-00320-3","title":"Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)","display_name":"Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI)","publication_year":2024,"publication_date":"2024-10-16","ids":{"openalex":"https://openalex.org/W4403458599","doi":"https://doi.org/10.1186/s13326-024-00320-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/39415214"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-024-00320-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00320-3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00320-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00320-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027355514","display_name":"Sabrina Toro","orcid":"https://orcid.org/0000-0002-4142-7153"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Sabrina Toro","raw_affiliation_strings":["University of North Carolina at Chapel Hill, Chapel Hill, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of North Carolina at Chapel Hill, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090205017","display_name":"Anna V. Anagnostopoulos","orcid":"https://orcid.org/0000-0002-6490-7723"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anna V. Anagnostopoulos","raw_affiliation_strings":["The Jackson Laboratory, Bar Harbor, ME, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, ME, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084390524","display_name":"Susan M. Bello","orcid":"https://orcid.org/0000-0003-4606-0597"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Susan M. Bello","raw_affiliation_strings":["The Jackson Laboratory, Bar Harbor, ME, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory, Bar Harbor, ME, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055554565","display_name":"Kai Blumberg","orcid":"https://orcid.org/0000-0002-3410-4655"},"institutions":[{"id":"https://openalex.org/I4210088410","display_name":"Beltsville Human Nutrition Research Center","ror":"https://ror.org/004zpe866","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307","https://openalex.org/I4210088410","https://openalex.org/I4210138094"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kai Blumberg","raw_affiliation_strings":["Department of Agriculture, Beltsville Human Nutrition Research Center, Beltsville, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Agriculture, Beltsville Human Nutrition Research Center, Beltsville, MD, USA","institution_ids":["https://openalex.org/I4210088410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000170169","display_name":"Rhiannon Cameron","orcid":"https://orcid.org/0000-0002-9578-0788"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Rhiannon Cameron","raw_affiliation_strings":["Simon Fraser University, Burnaby, BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Simon Fraser University, Burnaby, BC, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086465925","display_name":"Leigh Carmody","orcid":"https://orcid.org/0000-0001-7941-2961"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leigh Carmody","raw_affiliation_strings":["The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084833749","display_name":"Alexander D. Diehl","orcid":"https://orcid.org/0000-0001-9990-8331"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander D. Diehl","raw_affiliation_strings":["University at Buffalo, Buffalo, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University at Buffalo, Buffalo, NY, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006394765","display_name":"Damion Dooley","orcid":"https://orcid.org/0000-0002-8844-9165"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Damion M. Dooley","raw_affiliation_strings":["Simon Fraser University, Burnaby, BC, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Simon Fraser University, Burnaby, BC, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005828535","display_name":"William D. Duncan","orcid":"https://orcid.org/0000-0001-9625-1899"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William D. Duncan","raw_affiliation_strings":["University of Florida, Gainesville, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038484827","display_name":"Petra Fey","orcid":"https://orcid.org/0000-0002-4532-2703"},"institutions":[{"id":"https://openalex.org/I111979921","display_name":"Northwestern University","ror":"https://ror.org/000e0be47","country_code":"US","type":"education","lineage":["https://openalex.org/I111979921"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Petra Fey","raw_affiliation_strings":["Northwestern University, Evanston, IL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northwestern University, Evanston, IL, USA","institution_ids":["https://openalex.org/I111979921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014365246","display_name":"Pascale Gaudet","orcid":"https://orcid.org/0000-0003-1813-6857"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Pascale Gaudet","raw_affiliation_strings":["SIB Swiss Institute of Bioinformatics, Geneva, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SIB Swiss Institute of Bioinformatics, Geneva, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031007073","display_name":"Nomi L. Harris","orcid":"https://orcid.org/0000-0001-6315-3707"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nomi L. Harris","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062038813","display_name":"Marcin P. Joachimiak","orcid":"https://orcid.org/0000-0001-8175-045X"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcin P. Joachimiak","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011203208","display_name":"Leila Kiani","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Leila Kiani","raw_affiliation_strings":["Independent Scientific Information Analyst, Philadelphia, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Independent Scientific Information Analyst, Philadelphia, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055351466","display_name":"Tiago Lubiana","orcid":"https://orcid.org/0000-0003-2473-2313"},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Tiago Lubiana","raw_affiliation_strings":["University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of S\u00e3o Paulo, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5106027423","display_name":"M\u00f3nica Mu\u00f1oz-Torres","orcid":"https://orcid.org/0000-0001-8430-6039"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Monica C. Munoz-Torres","raw_affiliation_strings":["University of Colorado Anschutz Medical Campus, Aurora, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Colorado Anschutz Medical Campus, Aurora, CO, USA","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014471765","display_name":"Shawn T. O\u2019Neil","orcid":"https://orcid.org/0000-0001-6220-7080"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shawn O\u2018Neil","raw_affiliation_strings":["University of North Carolina at Chapel Hill, Chapel Hill, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of North Carolina at Chapel Hill, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053103903","display_name":"David Osumi-Sutherland","orcid":"https://orcid.org/0000-0002-7073-9172"},"institutions":[{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David Osumi-Sutherland","raw_affiliation_strings":["Sanger Institute, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sanger Institute, Hinxton, UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058365734","display_name":"Aleix Puig-Barbe","orcid":"https://orcid.org/0000-0001-6677-8489"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Aleix Puig-Barbe","raw_affiliation_strings":["European Bioinformatics Institute (EMBL-EBI), Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute (EMBL-EBI), Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073533486","display_name":"Justin Reese","orcid":"https://orcid.org/0000-0002-2170-2250"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin T. Reese","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012134423","display_name":"Leonore Reiser","orcid":"https://orcid.org/0000-0003-0073-0858"},"institutions":[{"id":"https://openalex.org/I4210087078","display_name":"Phoenix Bioinformatics","ror":"https://ror.org/0018yg518","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210087078"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leonore Reiser","raw_affiliation_strings":["Phoenix Bioinformatics, Newark, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Phoenix Bioinformatics, Newark, CA, USA","institution_ids":["https://openalex.org/I4210087078"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014726459","display_name":"Sofia Robb","orcid":"https://orcid.org/0000-0002-3528-5267"},"institutions":[{"id":"https://openalex.org/I114131015","display_name":"Stowers Institute for Medical Research","ror":"https://ror.org/04bgfm609","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I114131015"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sofia MC. Robb","raw_affiliation_strings":["Stowers Institute for Medical Research, Kansas City, MO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stowers Institute for Medical Research, Kansas City, MO, USA","institution_ids":["https://openalex.org/I114131015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093538479","display_name":"Troy Ruemping","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Troy Ruemping","raw_affiliation_strings":["IC-FOODS, Austin, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IC-FOODS, Austin, TX, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080581985","display_name":"James Seager","orcid":"https://orcid.org/0000-0001-7487-610X"},"institutions":[{"id":"https://openalex.org/I2799553609","display_name":"Rothamsted Research","ror":"https://ror.org/0347fy350","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799553609","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"James Seager","raw_affiliation_strings":["Rothamsted Research, Harpenden, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rothamsted Research, Harpenden, UK","institution_ids":["https://openalex.org/I2799553609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010367865","display_name":"Eric Sid","orcid":"https://orcid.org/0000-0001-7697-3026"},"institutions":[{"id":"https://openalex.org/I4210148682","display_name":"National Center for Advancing Translational Sciences","ror":"https://ror.org/04pw6fb54","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210148682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eric Sid","raw_affiliation_strings":["National Center for Advancing Translational Sciences, Bethesda, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Advancing Translational Sciences, Bethesda, MD, USA","institution_ids":["https://openalex.org/I4210148682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029885649","display_name":"Ray Stefancsik","orcid":"https://orcid.org/0000-0001-8314-2140"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ray Stefancsik","raw_affiliation_strings":["European Bioinformatics Institute (EMBL-EBI), Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Bioinformatics Institute (EMBL-EBI), Hinxton, UK","institution_ids":["https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069503994","display_name":"Magalie Weber","orcid":"https://orcid.org/0000-0001-6573-4070"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Magalie Weber","raw_affiliation_strings":["INRAE, French National Research Institute for Agriculture, Food and Environment, UR BIA, Nantes, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRAE, French National Research Institute for Agriculture, Food and Environment, UR BIA, Nantes, France","institution_ids":["https://openalex.org/I4210088668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053534930","display_name":"Valerie Wood","orcid":"https://orcid.org/0000-0001-6330-7526"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Valerie Wood","raw_affiliation_strings":["University of Cambridge, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064320417","display_name":"Melissa Haendel","orcid":"https://orcid.org/0000-0001-9114-8737"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melissa A. Haendel","raw_affiliation_strings":["University of North Carolina at Chapel Hill, Chapel Hill, NC, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of North Carolina at Chapel Hill, Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002223413","display_name":"Chris Mungall","orcid":"https://orcid.org/0000-0002-6601-2165"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher J. Mungall","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, Berkeley, CA, USA. cjmungall@lbl.gov","Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, USA. cjmungall@lbl.gov","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":6,"institutions_distinct_count":30,"corresponding_author_ids":["https://openalex.org/A5027355514"],"corresponding_institution_ids":["https://openalex.org/I114027177"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":9.3701,"has_fulltext":true,"cited_by_count":43,"citation_normalized_percentile":{"value":0.98778028,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"15","issue":"1","first_page":"19","last_page":"19"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8514999747276306,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8514999747276306,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.08250000327825546,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.026599999517202377,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.869982123374939},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8608488440513611},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.6180474758148193},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5525675415992737},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5290887355804443},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.502680778503418},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.47280874848365784},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4274854063987732},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.4134165644645691},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.41087356209754944},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3385937809944153},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.3365592956542969},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3307111859321594}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.869982123374939},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8608488440513611},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.6180474758148193},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5525675415992737},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5290887355804443},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.502680778503418},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.47280874848365784},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4274854063987732},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.4134165644645691},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.41087356209754944},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3385937809944153},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.3365592956542969},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3307111859321594},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":9,"locations":[{"id":"doi:10.1186/s13326-024-00320-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00320-3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00320-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:39415214","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39415214","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:HAL:hal-04835968v1","is_oa":true,"landing_page_url":"https://hal.inrae.fr/hal-04835968","pdf_url":"https://hal.inrae.fr/hal-04835968/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, 2024, 15 (1), pp.19. ⟨10.1186/s13326-024-00320-3⟩","raw_type":"Journal articles"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt10x4r512","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/10x4r512","pdf_url":"https://escholarship.org/content/qt10x4r512/qt10x4r512.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, vol 15, iss 1","raw_type":"article"},{"id":"pmh:oai:osti.gov:2479291","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/2479291","pdf_url":"https://www.osti.gov/servlets/purl/2479291","source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11484368","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11484368","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11484368/pdf/13326_2024_Article_320.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:d2e5c04897b04c518fa065aab65ad77e","is_oa":false,"landing_page_url":"https://doaj.org/article/d2e5c04897b04c518fa065aab65ad77e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 15, Iss 1, Pp 1-16 (2024)","raw_type":"article"},{"id":"pmh:oai:mouseion.jax.org:stfb2024-1262","is_oa":true,"landing_page_url":"https://mouseion.jax.org/stfb2024/236","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2024","raw_type":"text"},{"id":"pmh:oai:repository.rothamsted.ac.uk:99211","is_oa":true,"landing_page_url":"https://repository.rothamsted.ac.uk/download/88c01429068b52205c12d26e3570ee0d28811298af8533ee197b88fc00e32995/18426/13326_2024_320_MOESM1_ESM.docx","pdf_url":null,"source":{"id":"https://openalex.org/S4306402645","display_name":"Rothamsted Repository (Rothamsted Repository)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2799553609","host_organization_name":"Rothamsted Research","host_organization_lineage":["https://openalex.org/I2799553609"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1186/s13326-024-00320-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00320-3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00320-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.5899999737739563,"id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G1736414626","display_name":null,"funder_award_id":"2112606","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1821527707","display_name":null,"funder_award_id":"19/26284-1","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"},{"id":"https://openalex.org/G4119736662","display_name":null,"funder_award_id":"HG010859","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4225792607","display_name":null,"funder_award_id":"218236/Z/19/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"},{"id":"https://openalex.org/G4508309178","display_name":null,"funder_award_id":"DE-AC0205CH11231","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G6932787428","display_name":null,"funder_award_id":"HG012212","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7202612814","display_name":null,"funder_award_id":"DE-AC0205CH11231","funder_id":"https://openalex.org/F4320337480","funder_display_name":"Basic Energy Sciences"},{"id":"https://openalex.org/G8134011754","display_name":null,"funder_award_id":"DE-AC0205CH11231","funder_id":"https://openalex.org/F4320332359","funder_display_name":"Office of Science"},{"id":"https://openalex.org/G8299004767","display_name":null,"funder_award_id":"R24 OD011883","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8767938004","display_name":null,"funder_award_id":"OAC-2112606","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337480","display_name":"Basic Energy Sciences","ror":"https://ror.org/05mg91w61"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4403458599.pdf"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W55962619","https://openalex.org/W1614298861","https://openalex.org/W1965091013","https://openalex.org/W2021074129","https://openalex.org/W2068916031","https://openalex.org/W2084104913","https://openalex.org/W2096340575","https://openalex.org/W2103260426","https://openalex.org/W2116034137","https://openalex.org/W2126434293","https://openalex.org/W2130913281","https://openalex.org/W2134009291","https://openalex.org/W2162385209","https://openalex.org/W2170282111","https://openalex.org/W2192374892","https://openalex.org/W2462007197","https://openalex.org/W2521644033","https://openalex.org/W2523679382","https://openalex.org/W2548467786","https://openalex.org/W2624086276","https://openalex.org/W2894652650","https://openalex.org/W2903298154","https://openalex.org/W2963469388","https://openalex.org/W2965518110","https://openalex.org/W3027879771","https://openalex.org/W3102771275","https://openalex.org/W3106811464","https://openalex.org/W3111494011","https://openalex.org/W3138773240","https://openalex.org/W3166265964","https://openalex.org/W3170771812","https://openalex.org/W3173802674","https://openalex.org/W3214179544","https://openalex.org/W4224037213","https://openalex.org/W4303685003","https://openalex.org/W4323036511","https://openalex.org/W4323345674","https://openalex.org/W4366451788","https://openalex.org/W4367672983","https://openalex.org/W4384154918","https://openalex.org/W4392619039","https://openalex.org/W4394943312"],"related_works":["https://openalex.org/W26549824","https://openalex.org/W2732632690","https://openalex.org/W1506177826","https://openalex.org/W72173000","https://openalex.org/W2726617685","https://openalex.org/W2357775360","https://openalex.org/W2365397974","https://openalex.org/W2376385420","https://openalex.org/W2066281582","https://openalex.org/W2396086199"],"abstract_inverted_index":{"BACKGROUND:":[0],"Ontologies":[1,52],"are":[2],"fundamental":[3],"components":[4],"of":[5,51,93,106,110,155,174,184,208],"informatics":[6],"infrastructure":[7],"in":[8,20,82,157,166,181],"domains":[9],"such":[10],"as":[11],"biomedical,":[12],"environmental,":[13],"and":[14,23,29,34,42,65,74,85,212],"food":[15],"sciences,":[16],"representing":[17],"consensus":[18],"knowledge":[19,81],"an":[21,56],"accurate":[22],"computable":[24],"form.":[25],"However,":[26,201],"their":[27],"construction":[28,99,199],"maintenance":[30],"demand":[31],"substantial":[32,36],"resources":[33],"necessitate":[35],"collaboration":[37],"between":[38],"domain":[39,159],"experts,":[40],"curators,":[41],"ontology":[43,57,76,198,213,217],"experts.":[44],"We":[45,90,169],"present":[46],"Dynamic":[47],"Retrieval":[48,66],"Augmented":[49,67],"Generation":[50,68],"using":[53],"AI":[54],"(DRAGON-AI),":[55],"generation":[58,218],"method":[59,113,130],"employing":[60],"Large":[61],"Language":[62],"Models":[63],"(LLMs)":[64],"(RAG).":[69],"DRAGON-AI":[70,94,175],"can":[71],"generate":[72,135],"textual":[73],"logical":[75],"components,":[77],"drawing":[78],"from":[79,126],"existing":[80],"multiple":[83],"ontologies":[84],"unstructured":[86],"text":[87],"sources.":[88],"RESULTS:":[89],"assessed":[91],"performance":[92],"on":[95],"de":[96],"novo":[97],"term":[98],"across":[100],"ten":[101],"diverse":[102],"ontologies,":[103],"making":[104],"use":[105],"extensive":[107],"manual":[108,197],"evaluation":[109],"results.":[111],"Our":[112,129],"has":[114,121],"high":[115],"precision":[116,124],"for":[117],"relationship":[118],"generation,":[119],"but":[120,142],"slightly":[122],"lower":[123],"than":[125,146],"logic-based":[127],"reasoning.":[128],"is":[131],"also":[132,170,204],"able":[133,162],"to":[134,163,176,193],"definitions":[136],"deemed":[137],"acceptable":[138],"by":[139],"expert":[140,210],"evaluators,":[141],"these":[143],"scored":[144],"worse":[145],"human-authored":[147],"definitions.":[148,168],"Notably,":[149],"evaluators":[150],"with":[151],"the":[152,172,182,196,206,216],"highest":[153],"level":[154],"confidence":[156],"a":[158],"were":[160],"better":[161],"discern":[164],"flaws":[165],"AI-generated":[167],"demonstrated":[171],"ability":[173],"incorporate":[177],"natural":[178],"language":[179],"instructions":[180],"form":[183],"GitHub":[185],"issues.":[186],"CONCLUSIONS:":[187],"These":[188],"findings":[189],"suggest":[190],"DRAGON-AI's":[191],"potential":[192],"substantially":[194],"aid":[195],"process.":[200,219],"our":[202],"results":[203],"underscore":[205],"importance":[207],"having":[209],"curators":[211],"editors":[214],"drive":[215]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":28},{"year":2024,"cited_by_count":6}],"updated_date":"2026-05-07T13:39:58.223016","created_date":"2025-10-10T00:00:00"}