{"id":"https://openalex.org/W4402540199","doi":"https://doi.org/10.1186/s13326-024-00316-z","title":"Annotation of epilepsy clinic letters for natural language processing","display_name":"Annotation of epilepsy clinic letters for natural language processing","publication_year":2024,"publication_date":"2024-09-14","ids":{"openalex":"https://openalex.org/W4402540199","doi":"https://doi.org/10.1186/s13326-024-00316-z","pmid":"https://pubmed.ncbi.nlm.nih.gov/39277770"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-024-00316-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00316-z","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13326-024-00316-z.pdf","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s13326-024-00316-z.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005229482","display_name":"Beata Fonferko\u2010Shadrach","orcid":"https://orcid.org/0000-0003-3282-9502"},"institutions":[{"id":"https://openalex.org/I39586589","display_name":"Swansea University","ror":"https://ror.org/053fq8t95","country_code":"GB","type":"education","lineage":["https://openalex.org/I39586589"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Beata Fonferko-Shadrach","raw_affiliation_strings":["Swansea University Medical School, Swansea University, Swansea, Wales, UK. b.fonferko-shadrach@swansea.ac.uk"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swansea University Medical School, Swansea University, Swansea, Wales, UK. b.fonferko-shadrach@swansea.ac.uk","institution_ids":["https://openalex.org/I39586589"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024787116","display_name":"Huw Strafford","orcid":"https://orcid.org/0000-0003-2147-3969"},"institutions":[{"id":"https://openalex.org/I39586589","display_name":"Swansea University","ror":"https://ror.org/053fq8t95","country_code":"GB","type":"education","lineage":["https://openalex.org/I39586589"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Huw Strafford","raw_affiliation_strings":["Swansea University Medical School, Swansea University, Swansea, Wales, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swansea University Medical School, Swansea University, Swansea, Wales, UK","institution_ids":["https://openalex.org/I39586589"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108034310","display_name":"Carys Jones","orcid":null},"institutions":[{"id":"https://openalex.org/I39586589","display_name":"Swansea University","ror":"https://ror.org/053fq8t95","country_code":"GB","type":"education","lineage":["https://openalex.org/I39586589"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Carys Jones","raw_affiliation_strings":["Swansea University Medical School, Swansea University, Swansea, Wales, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swansea University Medical School, Swansea University, Swansea, Wales, UK","institution_ids":["https://openalex.org/I39586589"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113383199","display_name":"Russell Khan","orcid":null},"institutions":[{"id":"https://openalex.org/I39586589","display_name":"Swansea University","ror":"https://ror.org/053fq8t95","country_code":"GB","type":"education","lineage":["https://openalex.org/I39586589"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Russell A. Khan","raw_affiliation_strings":["Swansea University Medical School, Swansea University, Swansea, Wales, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swansea University Medical School, Swansea University, Swansea, Wales, UK","institution_ids":["https://openalex.org/I39586589"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111783712","display_name":"Sharon Brown","orcid":null},"institutions":[{"id":"https://openalex.org/I1294711689","display_name":"Swansea Bay University Health Board","ror":"https://ror.org/04zet5t12","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1294711689"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sharon Brown","raw_affiliation_strings":["Neurology Department, Swansea Bay University Health Board, Swansea, Wales, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurology Department, Swansea Bay University Health Board, Swansea, Wales, UK","institution_ids":["https://openalex.org/I1294711689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090114374","display_name":"Jenny Edwards","orcid":"https://orcid.org/0000-0002-7105-997X"},"institutions":[{"id":"https://openalex.org/I1294711689","display_name":"Swansea Bay University Health Board","ror":"https://ror.org/04zet5t12","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1294711689"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jenny Edwards","raw_affiliation_strings":["Neurology Department, Swansea Bay University Health Board, Swansea, Wales, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurology Department, Swansea Bay University Health Board, Swansea, Wales, UK","institution_ids":["https://openalex.org/I1294711689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022564154","display_name":"Jonathan Hawken","orcid":"https://orcid.org/0000-0003-1184-552X"},"institutions":[{"id":"https://openalex.org/I1294711689","display_name":"Swansea Bay University Health Board","ror":"https://ror.org/04zet5t12","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1294711689"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jonathan Hawken","raw_affiliation_strings":["Neurology Department, Swansea Bay University Health Board, Swansea, Wales, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurology Department, Swansea Bay University Health Board, Swansea, Wales, UK","institution_ids":["https://openalex.org/I1294711689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044719847","display_name":"Luke Shrimpton","orcid":null},"institutions":[{"id":"https://openalex.org/I1294711689","display_name":"Swansea Bay University Health Board","ror":"https://ror.org/04zet5t12","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1294711689"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Luke E. Shrimpton","raw_affiliation_strings":["Neurology Department, Swansea Bay University Health Board, Swansea, Wales, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurology Department, Swansea Bay University Health Board, Swansea, Wales, UK","institution_ids":["https://openalex.org/I1294711689"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103388942","display_name":"Catharine P. White","orcid":null},"institutions":[{"id":"https://openalex.org/I1294711689","display_name":"Swansea Bay University Health Board","ror":"https://ror.org/04zet5t12","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1294711689"]},{"id":"https://openalex.org/I39586589","display_name":"Swansea University","ror":"https://ror.org/053fq8t95","country_code":"GB","type":"education","lineage":["https://openalex.org/I39586589"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Catharine P. White","raw_affiliation_strings":["Paediatric Neurology Centre, Swansea Bay University Health Board, Swansea, Wales, UK","Swansea University Medical School, Swansea University, Swansea, Wales, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Paediatric Neurology Centre, Swansea Bay University Health Board, Swansea, Wales, UK","institution_ids":["https://openalex.org/I1294711689"]},{"raw_affiliation_string":"Swansea University Medical School, Swansea University, Swansea, Wales, UK","institution_ids":["https://openalex.org/I39586589"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071599658","display_name":"Robert Powell","orcid":"https://orcid.org/0000-0002-9768-1142"},"institutions":[{"id":"https://openalex.org/I1294711689","display_name":"Swansea Bay University Health Board","ror":"https://ror.org/04zet5t12","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1294711689"]},{"id":"https://openalex.org/I39586589","display_name":"Swansea University","ror":"https://ror.org/053fq8t95","country_code":"GB","type":"education","lineage":["https://openalex.org/I39586589"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert Powell","raw_affiliation_strings":["Neurology Department, Swansea Bay University Health Board, Swansea, Wales, UK","Swansea University Medical School, Swansea University, Swansea, Wales, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurology Department, Swansea Bay University Health Board, Swansea, Wales, UK","institution_ids":["https://openalex.org/I1294711689"]},{"raw_affiliation_string":"Swansea University Medical School, Swansea University, Swansea, Wales, UK","institution_ids":["https://openalex.org/I39586589"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110012463","display_name":"I. M. S. Sawhney","orcid":"https://orcid.org/0000-0001-6554-5472"},"institutions":[{"id":"https://openalex.org/I1294711689","display_name":"Swansea Bay University Health Board","ror":"https://ror.org/04zet5t12","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1294711689"]},{"id":"https://openalex.org/I39586589","display_name":"Swansea University","ror":"https://ror.org/053fq8t95","country_code":"GB","type":"education","lineage":["https://openalex.org/I39586589"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Inder M. S. Sawhney","raw_affiliation_strings":["Neurology Department, Swansea Bay University Health Board, Swansea, Wales, UK","Swansea University Medical School, Swansea University, Swansea, Wales, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurology Department, Swansea Bay University Health Board, Swansea, Wales, UK","institution_ids":["https://openalex.org/I1294711689"]},{"raw_affiliation_string":"Swansea University Medical School, Swansea University, Swansea, Wales, UK","institution_ids":["https://openalex.org/I39586589"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038534147","display_name":"William Owen Pickrell","orcid":"https://orcid.org/0000-0003-4396-5657"},"institutions":[{"id":"https://openalex.org/I1294711689","display_name":"Swansea Bay University Health Board","ror":"https://ror.org/04zet5t12","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1294711689"]},{"id":"https://openalex.org/I39586589","display_name":"Swansea University","ror":"https://ror.org/053fq8t95","country_code":"GB","type":"education","lineage":["https://openalex.org/I39586589"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"William O. Pickrell","raw_affiliation_strings":["Neurology Department, Swansea Bay University Health Board, Swansea, Wales, UK","Swansea University Medical School, Swansea University, Swansea, Wales, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurology Department, Swansea Bay University Health Board, Swansea, Wales, UK","institution_ids":["https://openalex.org/I1294711689"]},{"raw_affiliation_string":"Swansea University Medical School, Swansea University, Swansea, Wales, UK","institution_ids":["https://openalex.org/I39586589"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064224761","display_name":"Arron Lacey","orcid":"https://orcid.org/0000-0001-7983-8073"},"institutions":[{"id":"https://openalex.org/I39586589","display_name":"Swansea University","ror":"https://ror.org/053fq8t95","country_code":"GB","type":"education","lineage":["https://openalex.org/I39586589"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Arron S. Lacey","raw_affiliation_strings":["Swansea University Medical School, Swansea University, Swansea, Wales, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Swansea University Medical School, Swansea University, Swansea, Wales, UK","institution_ids":["https://openalex.org/I39586589"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5005229482"],"corresponding_institution_ids":["https://openalex.org/I39586589"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.9116,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.79212434,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"15","issue":"1","first_page":"17","last_page":"17"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.39800000190734863,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.39800000190734863,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.2818000018596649,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.047200001776218414,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8586476445198059},{"id":"https://openalex.org/keywords/epilepsy","display_name":"Epilepsy","score":0.6933571696281433},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6328114867210388},{"id":"https://openalex.org/keywords/temporal-annotation","display_name":"Temporal annotation","score":0.6191564798355103},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5844242572784424},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43686628341674805},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3694286346435547},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.3687472939491272},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3272740840911865},{"id":"https://openalex.org/keywords/language-technology","display_name":"Language technology","score":0.138179749250412},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.09776696562767029},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.06827166676521301}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8586476445198059},{"id":"https://openalex.org/C2778186239","wikidata":"https://www.wikidata.org/wiki/Q41571","display_name":"Epilepsy","level":2,"score":0.6933571696281433},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6328114867210388},{"id":"https://openalex.org/C7044111","wikidata":"https://www.wikidata.org/wiki/Q15844891","display_name":"Temporal annotation","level":5,"score":0.6191564798355103},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5844242572784424},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43686628341674805},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3694286346435547},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.3687472939491272},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3272740840911865},{"id":"https://openalex.org/C14919245","wikidata":"https://www.wikidata.org/wiki/Q1976109","display_name":"Language technology","level":4,"score":0.138179749250412},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.09776696562767029},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.06827166676521301},{"id":"https://openalex.org/C129353971","wikidata":"https://www.wikidata.org/wiki/Q5156949","display_name":"Comprehension approach","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D004827","descriptor_name":"Epilepsy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004827","descriptor_name":"Epilepsy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004827","descriptor_name":"Epilepsy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004827","descriptor_name":"Epilepsy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004827","descriptor_name":"Epilepsy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004827","descriptor_name":"Epilepsy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s13326-024-00316-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00316-z","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13326-024-00316-z.pdf","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:39277770","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39277770","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11402197","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11402197","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11402197/pdf/13326_2024_Article_316.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:92eaf5cec1324a318012a2f857b62a25","is_oa":true,"landing_page_url":"https://doaj.org/article/92eaf5cec1324a318012a2f857b62a25","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 15, Iss 1, Pp 1-5 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13326-024-00316-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00316-z","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13326-024-00316-z.pdf","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320012","display_name":"Epilepsy Research UK","ror":"https://ror.org/01gycsq30"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4402540199.pdf"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W68566686","https://openalex.org/W79139011","https://openalex.org/W158623955","https://openalex.org/W2159583324","https://openalex.org/W2592509339","https://openalex.org/W2594644573","https://openalex.org/W2928222247","https://openalex.org/W2946090968","https://openalex.org/W2995349381","https://openalex.org/W3005056912","https://openalex.org/W3048179169","https://openalex.org/W3152019416","https://openalex.org/W3183397339","https://openalex.org/W3198980621","https://openalex.org/W4210898640","https://openalex.org/W4235759629","https://openalex.org/W4286255110","https://openalex.org/W4310640599","https://openalex.org/W4367299217","https://openalex.org/W4386243802","https://openalex.org/W4391132329","https://openalex.org/W6606580971"],"related_works":["https://openalex.org/W2080575979","https://openalex.org/W4385569300","https://openalex.org/W48671780","https://openalex.org/W1994489417","https://openalex.org/W2369337446","https://openalex.org/W2573587940","https://openalex.org/W2061851981","https://openalex.org/W3145920652","https://openalex.org/W2137228101","https://openalex.org/W95708995"],"abstract_inverted_index":{"BACKGROUND:":[0],"Natural":[1],"language":[2],"processing":[3],"(NLP)":[4],"is":[5,37,186],"increasingly":[6],"being":[7],"used":[8,91,123,202],"to":[9,16,44,48,87,124,226],"extract":[10],"structured":[11],"information":[12,244],"from":[13,245],"unstructured":[14,246],"text":[15,216],"assist":[17],"clinical":[18,42,215,262],"decision-making":[19],"and":[20,32,47,84,113,122,165,174,197,221,263],"aid":[21],"healthcare":[22],"research.":[23],"The":[24,76,131,170,210,232],"availability":[25],"of":[26,34,52,118,128,140,148,161,192,259],"expert-annotated":[27],"documents":[28,43],"for":[29,203,234,261],"the":[30,50,92,103,126,137,153,187,257],"development":[31],"validation":[33],"NLP":[35,59,204,239,260],"applications":[36],"limited.":[38],"We":[39,62,90],"created":[40,63],"synthetic":[41,65,171],"address":[45],"this,":[46],"validate":[49,125],"Extraction":[51],"Epilepsy":[53],"Clinical":[54],"Text":[55],"version":[56],"2":[57],"(ExECTv2)":[58],"pipeline.":[60],"METHODS:":[61],"200":[64],"clinic":[66,195],"letters":[67,77,196,248],"based":[68,101],"on":[69,102],"hospital":[70],"outpatient":[71],"consultations":[72],"with":[73,96,206,249],"epilepsy":[74,98,194,208,238,243,247],"specialists.":[75],"were":[78,111],"double":[79],"annotated":[80,193],"by":[81,229],"trained":[82],"clinicians":[83],"researchers":[85,205],"according":[86],"agreed":[88,121],"guidelines.":[89],"annotation":[93,175,217],"tool,":[94],"Markup,":[95],"an":[97,157],"concept":[99],"list":[100],"Unified":[104],"Medical":[105],"Language":[106],"System":[107],"ontology.":[108],"All":[109],"annotations":[110,119,141],"reviewed,":[112],"a":[114,143,223],"gold":[115,154,224],"standard":[116,155,225],"set":[117,191],"was":[120],"performance":[127],"ExECTv2.":[129],"RESULTS:":[130],"overall":[132,158],"inter-annotator":[133],"agreement":[134],"(IAA)":[135],"between":[136],"two":[138],"sets":[139],"produced":[142],"per":[144,163,167],"item":[145],"F1":[146,159],"score":[147,160],"0.73.":[149],"Validating":[150],"ExECTv2":[151],"using":[152],"gave":[156],"0.87":[162],"item,":[164],"0.90":[166],"letter.":[168],"CONCLUSION:":[169],"letters,":[172],"annotations,":[173],"guidelines":[176,198],"have":[177],"been":[178],"made":[179],"freely":[180],"available.":[181],"To":[182],"our":[183,236],"knowledge,":[184],"this":[185],"first":[188],"publicly":[189],"available":[190],"that":[199,214],"can":[200],"be":[201,227],"minimum":[207],"knowledge.":[209],"IAA":[211],"results":[212,233],"show":[213],"tasks":[218],"are":[219],"difficult":[220],"require":[222],"arranged":[228],"researcher":[230],"consensus.":[231],"ExECTv2,":[235],"automated":[237],"pipeline,":[240],"extracted":[241],"detailed":[242],"more":[250],"accuracy":[251],"than":[252],"human":[253],"annotators,":[254],"further":[255],"confirming":[256],"utility":[258],"research":[264],"applications.":[265]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-13T06:13:01.061226","created_date":"2025-10-10T00:00:00"}
