{"id":"https://openalex.org/W4399443012","doi":"https://doi.org/10.1186/s13326-024-00311-4","title":"Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection","display_name":"Multi-task transfer learning for the prediction of entity modifiers in clinical text: application to opioid use disorder case detection","publication_year":2024,"publication_date":"2024-06-07","ids":{"openalex":"https://openalex.org/W4399443012","doi":"https://doi.org/10.1186/s13326-024-00311-4","pmid":"https://pubmed.ncbi.nlm.nih.gov/38849884"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-024-00311-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00311-4","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00311-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00311-4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032201681","display_name":"Abdullateef I. Almudaifer","orcid":null},"institutions":[{"id":"https://openalex.org/I23075662","display_name":"Taibah University","ror":"https://ror.org/01xv1nn60","country_code":"SA","type":"education","lineage":["https://openalex.org/I23075662"]},{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["SA","US"],"is_corresponding":true,"raw_author_name":"Abdullateef I. Almudaifer","raw_affiliation_strings":["College of Computer Science and Engineering, Taibah University, Yanbu, Madinah, Kingdom of Saudi Arabia. lateef11@uab.edu","University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA. lateef11@uab.edu","University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA","College of Computer Science and Engineering, Taibah University, Yanbu, Madinah, Kingdom of Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Engineering, Taibah University, Yanbu, Madinah, Kingdom of Saudi Arabia. lateef11@uab.edu","institution_ids":["https://openalex.org/I23075662"]},{"raw_affiliation_string":"University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA. lateef11@uab.edu","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"College of Computer Science and Engineering, Taibah University, Yanbu, Madinah, Kingdom of Saudi Arabia","institution_ids":["https://openalex.org/I23075662"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032463672","display_name":"Whitney Covington","orcid":null},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Whitney Covington","raw_affiliation_strings":["University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093787593","display_name":"JaMor Hairston","orcid":"https://orcid.org/0000-0001-6069-5869"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"JaMor Hairston","raw_affiliation_strings":["University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058712833","display_name":"Zachary Deitch","orcid":null},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zachary Deitch","raw_affiliation_strings":["University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002469541","display_name":"Ankit Anand","orcid":"https://orcid.org/0000-0002-8832-3212"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ankit Anand","raw_affiliation_strings":["University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051935254","display_name":"Caleb Carroll","orcid":"https://orcid.org/0000-0002-1444-6383"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Caleb M. Carroll","raw_affiliation_strings":["University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093787594","display_name":"Estera Crisan","orcid":null},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Estera Crisan","raw_affiliation_strings":["University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007134737","display_name":"William D. Bradford","orcid":"https://orcid.org/0000-0001-8302-8305"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William Bradford","raw_affiliation_strings":["University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076506306","display_name":"Lauren A. Walter","orcid":"https://orcid.org/0000-0002-3040-436X"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lauren A. Walter","raw_affiliation_strings":["University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085516894","display_name":"Ellen Eaton","orcid":"https://orcid.org/0000-0001-8539-4907"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ellen F. Eaton","raw_affiliation_strings":["University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027181196","display_name":"Sue S. Feldman","orcid":"https://orcid.org/0000-0002-1173-3993"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sue S. Feldman","raw_affiliation_strings":["University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA","institution_ids":["https://openalex.org/I32389192"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085958503","display_name":"John D. Osborne","orcid":"https://orcid.org/0000-0002-0851-1150"},"institutions":[{"id":"https://openalex.org/I32389192","display_name":"University of Alabama at Birmingham","ror":"https://ror.org/008s83205","country_code":"US","type":"education","lineage":["https://openalex.org/I32389192"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John D. Osborne","raw_affiliation_strings":["University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA. ozborn@uab.edu","University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA. ozborn@uab.edu","institution_ids":["https://openalex.org/I32389192"]},{"raw_affiliation_string":"University of Alabama at Birmingham, 1720 University Blvd, Birmingham, 35294, Alabama, USA","institution_ids":["https://openalex.org/I32389192"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5032201681"],"corresponding_institution_ids":["https://openalex.org/I23075662","https://openalex.org/I32389192"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":1.5734,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.85274183,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"15","issue":"1","first_page":"11","last_page":"11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.5375000238418579,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.5375000238418579,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12488","display_name":"Mental Health via Writing","score":0.10040000081062317,"subfield":{"id":"https://openalex.org/subfields/3207","display_name":"Social Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.047200001776218414,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7997515201568604},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6290078163146973},{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.6207035779953003},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4633826017379761},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4520565867424011},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4400368332862854},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.39824050664901733},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3879910409450531}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7997515201568604},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6290078163146973},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.6207035779953003},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4633826017379761},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4520565867424011},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4400368332862854},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.39824050664901733},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3879910409450531},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009293","descriptor_name":"Opioid-Related Disorders","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009293","descriptor_name":"Opioid-Related Disorders","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009293","descriptor_name":"Opioid-Related Disorders","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009293","descriptor_name":"Opioid-Related Disorders","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009293","descriptor_name":"Opioid-Related Disorders","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009293","descriptor_name":"Opioid-Related Disorders","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009293","descriptor_name":"Opioid-Related Disorders","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009293","descriptor_name":"Opioid-Related Disorders","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s13326-024-00311-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00311-4","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00311-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:38849884","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38849884","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11157899","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11157899","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11157899/pdf/13326_2024_Article_311.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:31445e2b39834516a3dc15c7b3a91df9","is_oa":false,"landing_page_url":"https://doaj.org/article/31445e2b39834516a3dc15c7b3a91df9","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 15, Iss 1, Pp 1-11 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13326-024-00311-4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00311-4","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00311-4","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.7099999785423279,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G2199848516","display_name":null,"funder_award_id":"1H79TI081609","funder_id":"https://openalex.org/F4320332164","funder_display_name":"Substance Abuse and Mental Health Services Administration"},{"id":"https://openalex.org/G5709402805","display_name":null,"funder_award_id":"T32HS013852","funder_id":"https://openalex.org/F4320332177","funder_display_name":"Agency for Healthcare Research and Quality"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332164","display_name":"Substance Abuse and Mental Health Services Administration","ror":"https://ror.org/03t3qg659"},{"id":"https://openalex.org/F4320332177","display_name":"Agency for Healthcare Research and Quality","ror":"https://ror.org/03jmfdf59"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4399443012.pdf"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W180510140","https://openalex.org/W182767159","https://openalex.org/W1950048153","https://openalex.org/W1964625659","https://openalex.org/W2031648200","https://openalex.org/W2062458775","https://openalex.org/W2127186124","https://openalex.org/W2139865360","https://openalex.org/W2146089916","https://openalex.org/W2162800060","https://openalex.org/W2250526219","https://openalex.org/W2516535623","https://openalex.org/W2885066297","https://openalex.org/W2908840510","https://openalex.org/W2911489562","https://openalex.org/W2913340405","https://openalex.org/W2963351448","https://openalex.org/W2963716420","https://openalex.org/W2976298486","https://openalex.org/W2984582583","https://openalex.org/W2993436875","https://openalex.org/W3046375318","https://openalex.org/W3102602010","https://openalex.org/W3137409945","https://openalex.org/W3159058598","https://openalex.org/W3167136668","https://openalex.org/W3192478068","https://openalex.org/W3198599617","https://openalex.org/W4213016248","https://openalex.org/W4379379356","https://openalex.org/W6607434451","https://openalex.org/W6739901393"],"related_works":["https://openalex.org/W3201126466","https://openalex.org/W4282827391","https://openalex.org/W4405541655","https://openalex.org/W4386828785","https://openalex.org/W3165580226","https://openalex.org/W2961085424","https://openalex.org/W3135401135","https://openalex.org/W2886688859","https://openalex.org/W3133164560","https://openalex.org/W3041001745"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1],"semantics":[2],"of":[3,29,98,111,122,145,184],"entities":[4,31],"extracted":[5],"from":[6,137,166],"a":[7,50,72,120,175],"clinical":[8,30,115,123,188],"text":[9,189],"can":[10,170],"be":[11,171],"dramatically":[12],"altered":[13],"by":[14],"modifiers,":[15],"including":[16],"entity":[17,116],"negation,":[18],"uncertainty,":[19],"conditionality,":[20],"severity,":[21],"and":[22,48,59,71,107,154],"subject.":[23],"Existing":[24],"models":[25],"for":[26,42,92,114,187],"determining":[27],"modifiers":[28,56,82,90,117,124],"involve":[32],"regular":[33],"expression":[34],"or":[35],"features":[36],"weights":[37,165],"that":[38,80,163],"are":[39,57,125],"trained":[40],"independently":[41],"each":[43],"modifier.":[44],"METHODS:":[45],"We":[46,94,161],"develop":[47],"evaluate":[49,95],"multi-task":[51,100],"transformer":[52],"architecture":[53],"design":[54],"where":[55],"learned":[58,164],"predicted":[60],"jointly":[61],"using":[62],"the":[63,96,109,134,182],"publicly":[64],"available":[65],"SemEval":[66,85,138],"2015":[67,139],"Task":[68,140],"14":[69],"corpus":[70,136],"new":[73,176],"Opioid":[74],"Use":[75],"Disorder":[76],"(OUD)":[77],"data":[78,179],"set":[79],"contains":[81],"shared":[83,168],"with":[84],"as":[86,88],"well":[87],"novel":[89],"specific":[91],"OUD.":[93],"effectiveness":[97],"our":[99,167],"learning":[101,113,186],"approach":[102,129],"versus":[103],"previously":[104],"published":[105],"systems":[106],"assess":[108],"feasibility":[110],"transfer":[112,185],"when":[118],"only":[119],"portion":[121],"shared.":[126],"RESULTS:":[127],"Our":[128],"achieved":[130],"state-of-the-art":[131],"results":[132],"on":[133,147,151,156],"ShARe":[135],"14,":[141],"showing":[142],"an":[143],"increase":[144],"1.1%":[146],"weighted":[148],"accuracy,":[149,153],"1.7%":[150],"unweighted":[152],"10%":[155],"micro":[157],"F1":[158],"scores.":[159],"CONCLUSIONS:":[160],"show":[162],"model":[169],"effectively":[172],"transferred":[173],"to":[174],"partially":[177],"matched":[178],"set,":[180],"validating":[181],"use":[183],"modifiers.":[190]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
