{"id":"https://openalex.org/W4395463966","doi":"https://doi.org/10.1186/s13326-024-00307-0","title":"Ontological representation, modeling, and analysis of parasite vaccines","display_name":"Ontological representation, modeling, and analysis of parasite vaccines","publication_year":2024,"publication_date":"2024-04-25","ids":{"openalex":"https://openalex.org/W4395463966","doi":"https://doi.org/10.1186/s13326-024-00307-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/38664818"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-024-00307-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00307-0","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00307-0","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00307-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043564973","display_name":"Anthony Huffman","orcid":"https://orcid.org/0000-0002-0576-550X"},"institutions":[{"id":"https://openalex.org/I4210114445","display_name":"Michigan Medicine","ror":"https://ror.org/01zcpa714","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210114445"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anthony Huffman","raw_affiliation_strings":["Department of Computational Medicine and Bioinformatics, University of Michigan Medicine School, 48109, Ann Arbor, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine and Bioinformatics, University of Michigan Medicine School, 48109, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I4210114445"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024651958","display_name":"Xumeng Zhang","orcid":"https://orcid.org/0000-0002-5861-2355"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xumeng Zhang","raw_affiliation_strings":["College of Literature, Science, and the Arts, University of Michigan, 48109, Ann Arbor, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Literature, Science, and the Arts, University of Michigan, 48109, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5095893032","display_name":"Meghana Lanka","orcid":null},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Meghana Lanka","raw_affiliation_strings":["College of Literature, Science, and the Arts, University of Michigan, 48109, Ann Arbor, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Literature, Science, and the Arts, University of Michigan, 48109, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100652277","display_name":"Jie Zheng","orcid":"https://orcid.org/0000-0002-2999-0103"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210114445","display_name":"Michigan Medicine","ror":"https://ror.org/01zcpa714","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210114445"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jie Zheng","raw_affiliation_strings":["Unit for Laboratory Animal Medicine, University of Michigan Medicine School, 48109, Ann Arbor, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit for Laboratory Animal Medicine, University of Michigan Medicine School, 48109, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315","https://openalex.org/I4210114445"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088261794","display_name":"Anna Maria Masci","orcid":"https://orcid.org/0000-0003-1940-6740"},"institutions":[{"id":"https://openalex.org/I1343551460","display_name":"The University of Texas MD Anderson Cancer Center","ror":"https://ror.org/04twxam07","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1343551460"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anna Maria Masci","raw_affiliation_strings":["Department of Data Impact and Governance, MD Anderson Cancer Center University of Texas, TX, 77030, Houston, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Data Impact and Governance, MD Anderson Cancer Center University of Texas, TX, 77030, Houston, USA","institution_ids":["https://openalex.org/I1343551460"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024742201","display_name":"Yongqun He","orcid":"https://orcid.org/0000-0001-9189-9661"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]},{"id":"https://openalex.org/I4210114445","display_name":"Michigan Medicine","ror":"https://ror.org/01zcpa714","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210114445"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yongqun He","raw_affiliation_strings":["Department of Computational Medicine and Bioinformatics, University of Michigan Medicine School, 48109, Ann Arbor, MI, USA. yongqunh@med.umich.edu","Department of Microbiology and Immunology, University of Michigan Medicine School, 48109, Ann Arbor, MI, USA. yongqunh@med.umich.edu","Unit for Laboratory Animal Medicine, University of Michigan Medicine School, 48109, Ann Arbor, MI, USA. yongqunh@med.umich.edu","Unit for Laboratory Animal Medicine, University of Michigan Medicine School, 48109, Ann Arbor, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Medicine and Bioinformatics, University of Michigan Medicine School, 48109, Ann Arbor, MI, USA. yongqunh@med.umich.edu","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Department of Microbiology and Immunology, University of Michigan Medicine School, 48109, Ann Arbor, MI, USA. yongqunh@med.umich.edu","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Unit for Laboratory Animal Medicine, University of Michigan Medicine School, 48109, Ann Arbor, MI, USA. yongqunh@med.umich.edu","institution_ids":["https://openalex.org/I27837315"]},{"raw_affiliation_string":"Unit for Laboratory Animal Medicine, University of Michigan Medicine School, 48109, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315","https://openalex.org/I4210114445"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5024742201"],"corresponding_institution_ids":["https://openalex.org/I27837315","https://openalex.org/I4210114445"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.5992,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.65971776,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":97},"biblio":{"volume":"15","issue":"1","first_page":"4","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9351999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9351999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.007300000172108412,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.004999999888241291,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/parasite-hosting","display_name":"Parasite hosting","score":0.6434214115142822},{"id":"https://openalex.org/keywords/transmission","display_name":"Transmission (telecommunications)","score":0.5995762348175049},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.5591861605644226},{"id":"https://openalex.org/keywords/malaria","display_name":"Malaria","score":0.5019330978393555},{"id":"https://openalex.org/keywords/pathogen","display_name":"Pathogen","score":0.488416850566864},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4468265771865845},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.44673019647598267},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3214256763458252},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.3044742941856384},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.19690841436386108}],"concepts":[{"id":"https://openalex.org/C71928629","wikidata":"https://www.wikidata.org/wiki/Q804206","display_name":"Parasite hosting","level":2,"score":0.6434214115142822},{"id":"https://openalex.org/C761482","wikidata":"https://www.wikidata.org/wiki/Q118093","display_name":"Transmission (telecommunications)","level":2,"score":0.5995762348175049},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.5591861605644226},{"id":"https://openalex.org/C2778048844","wikidata":"https://www.wikidata.org/wiki/Q12156","display_name":"Malaria","level":2,"score":0.5019330978393555},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.488416850566864},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4468265771865845},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.44673019647598267},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3214256763458252},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.3044742941856384},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.19690841436386108},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010271","descriptor_name":"Parasites","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010271","descriptor_name":"Parasites","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010271","descriptor_name":"Parasites","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010271","descriptor_name":"Parasites","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010271","descriptor_name":"Parasites","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010271","descriptor_name":"Parasites","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010271","descriptor_name":"Parasites","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D016052","descriptor_name":"Protozoan Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D016052","descriptor_name":"Protozoan Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D016052","descriptor_name":"Protozoan Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D016052","descriptor_name":"Protozoan Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D016052","descriptor_name":"Protozoan Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D016052","descriptor_name":"Protozoan Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D016052","descriptor_name":"Protozoan Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s13326-024-00307-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00307-0","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00307-0","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:38664818","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38664818","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:11044459","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11044459","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC11044459/pdf/13326_2024_Article_307.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:633973e9409e48f1bf7f01151c48a31f","is_oa":false,"landing_page_url":"https://doaj.org/article/633973e9409e48f1bf7f01151c48a31f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 15, Iss 1, Pp 1-11 (2024)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13326-024-00307-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-024-00307-0","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-024-00307-0","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4002602610","display_name":null,"funder_award_id":"U24 AI171008","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G613429801","display_name":null,"funder_award_id":"U24AI171008","funder_id":"https://openalex.org/F4320337355","funder_display_name":"National Institute of Allergy and Infectious Diseases"},{"id":"https://openalex.org/G8526910669","display_name":null,"funder_award_id":"U24AI171008","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4395463966.pdf"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1973201396","https://openalex.org/W1979834097","https://openalex.org/W1984080130","https://openalex.org/W2057149454","https://openalex.org/W2062558911","https://openalex.org/W2087882333","https://openalex.org/W2090577544","https://openalex.org/W2095152732","https://openalex.org/W2095602317","https://openalex.org/W2097659338","https://openalex.org/W2097795961","https://openalex.org/W2130420078","https://openalex.org/W2160654020","https://openalex.org/W2261812172","https://openalex.org/W2508497305","https://openalex.org/W2550548876","https://openalex.org/W2792407225","https://openalex.org/W2809247618","https://openalex.org/W2947349355","https://openalex.org/W2950685900","https://openalex.org/W2976620503","https://openalex.org/W3103944492","https://openalex.org/W3112817610","https://openalex.org/W3113774549","https://openalex.org/W3162421907","https://openalex.org/W4212965221","https://openalex.org/W4220925629","https://openalex.org/W4229010469","https://openalex.org/W4281735653","https://openalex.org/W4281951409","https://openalex.org/W4306980360","https://openalex.org/W4315436616","https://openalex.org/W4391671314"],"related_works":["https://openalex.org/W2115261803","https://openalex.org/W4367362025","https://openalex.org/W2108574175","https://openalex.org/W2347627655","https://openalex.org/W1477123016","https://openalex.org/W2386208584","https://openalex.org/W2226154164","https://openalex.org/W2368864186","https://openalex.org/W3122661184","https://openalex.org/W2371118503"],"abstract_inverted_index":{"BACKGROUND:":[0],"Pathogenic":[1],"parasites":[2,20],"are":[3,287],"responsible":[4],"for":[5,27,126,130,135],"multiple":[6],"diseases,":[7],"such":[8,233],"as":[9,53,78,234],"malaria":[10,272],"and":[11,16,110,134,181,198,238,256,331,343],"Chagas":[12],"disease,":[13],"in":[14,80,91,200,222,244,289,296,320],"humans":[15],"livestock.":[17],"Traditionally,":[18],"pathogenic":[19],"have":[21,298],"been":[22],"largely":[23],"an":[24,89],"evasive":[25],"topic":[26],"vaccine":[28,39,43,56,69,93,197,203,324,348],"design,":[29,40],"with":[30,270,313],"most":[31],"successful":[32,86],"vaccines":[33,47,105,128,175,225,249],"only":[34],"emerging":[35],"recently.":[36],"To":[37],"aid":[38],"the":[41,60,66,83,144,157,202,205,208,223,245,248,265,271,290,314,335,338],"VIOLIN":[42,58,98],"knowledgebase":[44],"has":[45],"collected":[46],"from":[48,143],"all":[49],"sources":[50],"to":[51,64,101,118,152,154,173,177,195,306],"serve":[52],"a":[54,276,299],"comprehensive":[55],"knowledgebase.":[57],"utilizes":[59],"Vaccine":[61],"Ontology":[62,145],"(VO)":[63],"standardize":[65],"modeling":[67,94,330],"of":[68,85,140,146,159,189,207,217,247,264,280,282,302,337],"data.":[70],"VO":[71,119,124,153,166,184,329],"did":[72],"not":[73],"model":[74],"complex":[75,339],"life":[76,132,162,315,341],"cycles":[77,342],"seen":[79],"parasites.":[81],"With":[82],"inclusion":[84],"parasite":[87,92,104,113,127,131,161,219,252,267,285,323,340],"vaccines,":[88],"update":[90],"was":[95,99,171,193],"needed.":[96],"RESULTS:":[97],"expanded":[100],"include":[102],"258":[103],"against":[106,250],"23":[107],"protozoan":[108],"species,":[109],"607":[111],"new":[112,165,183],"vaccine-related":[114],"terms":[115,142],"were":[116,150,242],"added":[117,172,194],"since":[120],"2022.":[121],"The":[122,259,309,327],"updated":[123,328],"design":[125],"accounts":[129],"stages":[133],"transmission-blocking":[136],"vaccines.":[137],"A":[138,164],"total":[139],"356":[141],"Parasite":[147],"Lifecycle":[148],"(OPL)":[149],"imported":[151],"help":[155],"represent":[156,174],"effect":[158],"different":[160],"stages.":[163],"class":[167],"term,":[168],"'transmission-blocking":[169],"vaccine,'":[170,192],"able":[176],"block":[178],"infectious":[179],"transmission,":[180],"one":[182],"object":[185],"property,":[186],"'blocks":[187],"transmission":[188,206],"pathogen":[190,199],"via":[191],"link":[196],"which":[201],"blocks":[204],"pathogen.":[209],"Additionally,":[210],"our":[211,321],"Gene":[212],"Set":[213],"Enrichment":[214],"Analysis":[215],"(GSEA)":[216],"140":[218,266],"antigens":[220,246,268,286,346],"used":[221],"parasitic":[224],"identified":[226,319],"enriched":[227],"features.":[228],"For":[229],"example,":[230],"significant":[231],"patterns,":[232],"signal,":[235],"plasma":[236],"membrane,":[237],"entry":[239],"into":[240],"host,":[241],"found":[243,261],"two":[251],"species:":[253],"Plasmodium":[254],"falciparum":[255,284],"Toxoplasma":[257],"gondii.":[258],"analysis":[260,333],"18":[262],"out":[263,279],"involved":[269],"disease":[273],"process.":[274],"Moreover,":[275],"majority":[277,300],"(15":[278],"54)":[281],"P.":[283],"localized":[288],"cell":[291],"membrane.":[292],"T.":[293],"gondii":[294],"antigens,":[295],"contrast,":[297],"(19/24)":[301],"their":[303,344],"proteins":[304],"related":[305],"signaling":[307],"pathways.":[308],"antigen-enriched":[310],"patterns":[311,318],"align":[312],"cycle":[316],"stage":[317],"ontological":[322],"modeling.":[325],"CONCLUSIONS:":[326],"GSEA":[332],"capture":[334],"influence":[336],"associated":[345],"on":[347],"development.":[349]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
