{"id":"https://openalex.org/W4389490952","doi":"https://doi.org/10.1186/s13326-023-00301-y","title":"BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs","display_name":"BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs","publication_year":2023,"publication_date":"2023-12-08","ids":{"openalex":"https://openalex.org/W4389490952","doi":"https://doi.org/10.1186/s13326-023-00301-y","pmid":"https://pubmed.ncbi.nlm.nih.gov/38066573"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-023-00301-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-023-00301-y","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-023-00301-y","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-023-00301-y","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102965953","display_name":"Daniel Daza","orcid":"https://orcid.org/0000-0002-5357-3705"},"institutions":[{"id":"https://openalex.org/I1318003438","display_name":"RELX Group (Netherlands)","ror":"https://ror.org/02scfj030","country_code":"NL","type":"company","lineage":["https://openalex.org/I1318003438","https://openalex.org/I4210160603"]},{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Daniel Daza","raw_affiliation_strings":["Discovery Lab, Elsevier, Amsterdam, The Netherlands. d.dazacruz@vu.nl","University of Amsterdam, Amsterdam, The Netherlands. d.dazacruz@vu.nl","Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. d.dazacruz@vu.nl","Vrije Universiteit Amsterdam, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Discovery Lab, Elsevier, Amsterdam, The Netherlands. d.dazacruz@vu.nl","institution_ids":["https://openalex.org/I1318003438"]},{"raw_affiliation_string":"University of Amsterdam, Amsterdam, The Netherlands. d.dazacruz@vu.nl","institution_ids":["https://openalex.org/I865915315"]},{"raw_affiliation_string":"Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. d.dazacruz@vu.nl","institution_ids":["https://openalex.org/I865915315"]},{"raw_affiliation_string":"Vrije Universiteit Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I865915315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033391602","display_name":"Dimitrios Alivanistos","orcid":"https://orcid.org/0000-0002-0090-2069"},"institutions":[{"id":"https://openalex.org/I1318003438","display_name":"RELX Group (Netherlands)","ror":"https://ror.org/02scfj030","country_code":"NL","type":"company","lineage":["https://openalex.org/I1318003438","https://openalex.org/I4210160603"]},{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Dimitrios Alivanistos","raw_affiliation_strings":["Discovery Lab, Elsevier, Amsterdam, The Netherlands. d.alivanistos@vu.nl","Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. d.alivanistos@vu.nl","Vrije Universiteit Amsterdam, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Discovery Lab, Elsevier, Amsterdam, The Netherlands. d.alivanistos@vu.nl","institution_ids":["https://openalex.org/I1318003438"]},{"raw_affiliation_string":"Vrije Universiteit Amsterdam, Amsterdam, The Netherlands. d.alivanistos@vu.nl","institution_ids":["https://openalex.org/I865915315"]},{"raw_affiliation_string":"Vrije Universiteit Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I865915315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010884249","display_name":"Payal Mitra","orcid":null},"institutions":[{"id":"https://openalex.org/I1318003438","display_name":"RELX Group (Netherlands)","ror":"https://ror.org/02scfj030","country_code":"NL","type":"company","lineage":["https://openalex.org/I1318003438","https://openalex.org/I4210160603"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Payal Mitra","raw_affiliation_strings":["Elsevier B.V., Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Elsevier B.V., Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I1318003438"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022571618","display_name":"Thom Pijnenburg","orcid":"https://orcid.org/0000-0001-9016-4508"},"institutions":[{"id":"https://openalex.org/I1318003438","display_name":"RELX Group (Netherlands)","ror":"https://ror.org/02scfj030","country_code":"NL","type":"company","lineage":["https://openalex.org/I1318003438","https://openalex.org/I4210160603"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Thom Pijnenburg","raw_affiliation_strings":["Elsevier B.V., Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Elsevier B.V., Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I1318003438"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041317183","display_name":"Michael Cochez","orcid":"https://orcid.org/0000-0001-5726-4638"},"institutions":[{"id":"https://openalex.org/I1318003438","display_name":"RELX Group (Netherlands)","ror":"https://ror.org/02scfj030","country_code":"NL","type":"company","lineage":["https://openalex.org/I1318003438","https://openalex.org/I4210160603"]},{"id":"https://openalex.org/I865915315","display_name":"Vrije Universiteit Amsterdam","ror":"https://ror.org/008xxew50","country_code":"NL","type":"education","lineage":["https://openalex.org/I865915315"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Michael Cochez","raw_affiliation_strings":["Discovery Lab, Elsevier, Amsterdam, The Netherlands","Vrije Universiteit Amsterdam, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Discovery Lab, Elsevier, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I1318003438"]},{"raw_affiliation_string":"Vrije Universiteit Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I865915315"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034924491","display_name":"Paul Groth","orcid":"https://orcid.org/0000-0003-0183-6910"},"institutions":[{"id":"https://openalex.org/I1318003438","display_name":"RELX Group (Netherlands)","ror":"https://ror.org/02scfj030","country_code":"NL","type":"company","lineage":["https://openalex.org/I1318003438","https://openalex.org/I4210160603"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Paul Groth","raw_affiliation_strings":["Discovery Lab, Elsevier, Amsterdam, The Netherlands","University of Amsterdam, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Discovery Lab, Elsevier, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I1318003438"]},{"raw_affiliation_string":"University of Amsterdam, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5102965953"],"corresponding_institution_ids":["https://openalex.org/I1318003438","https://openalex.org/I865915315"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":2.0307,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.87119294,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"14","issue":"1","first_page":"20","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.4799000024795532,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.4799000024795532,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.4336000084877014,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.0210999995470047,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8650385737419128},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5648995637893677},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5623928904533386},{"id":"https://openalex.org/keywords/modalities","display_name":"Modalities","score":0.5475966334342957},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.531703770160675},{"id":"https://openalex.org/keywords/modality","display_name":"Modality (human\u2013computer interaction)","score":0.521298885345459},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49247655272483826},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.49224963784217834},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4656885862350464},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.4425353407859802},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3716079592704773},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.33877962827682495}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8650385737419128},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5648995637893677},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5623928904533386},{"id":"https://openalex.org/C2779903281","wikidata":"https://www.wikidata.org/wiki/Q6888026","display_name":"Modalities","level":2,"score":0.5475966334342957},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.531703770160675},{"id":"https://openalex.org/C2780226545","wikidata":"https://www.wikidata.org/wiki/Q6888030","display_name":"Modality (human\u2013computer interaction)","level":2,"score":0.521298885345459},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49247655272483826},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.49224963784217834},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4656885862350464},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.4425353407859802},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3716079592704773},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.33877962827682495},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C36289849","wikidata":"https://www.wikidata.org/wiki/Q34749","display_name":"Social science","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1186/s13326-023-00301-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-023-00301-y","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-023-00301-y","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:38066573","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38066573","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:dare.uva.nl:openaire/b42ef84e-2ffe-4aa3-b441-d887884334e1","is_oa":true,"landing_page_url":"https://handle.uba.uva.nl/personal/pure/en/publications/bioblp-a-modular-framework-for-learning-on-multimodal-biomedical-knowledge-graphs(b42ef84e-2ffe-4aa3-b441-d887884334e1).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400088","display_name":"UvA-DARE (University of Amsterdam)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I887064364","host_organization_name":"University of Amsterdam","host_organization_lineage":["https://openalex.org/I887064364"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Daza, D, Alivanistos, D, Mitra, P, Pijnenburg, T, Cochez, M & Groth, P 2023, 'BioBLP: a modular framework for learning on multimodal biomedical knowledge graphs', Journal of Biomedical Semantics, vol. 14, 20. https://doi.org/10.1186/s13326-023-00301-y","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:10709903","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10709903","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10709903/pdf/13326_2023_Article_301.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:3b9a77a69f5b4507a0fc94b7071e85ba","is_oa":true,"landing_page_url":"https://doaj.org/article/3b9a77a69f5b4507a0fc94b7071e85ba","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 14, Iss 1, Pp 1-19 (2023)","raw_type":"article"},{"id":"pmh:oai:research.vu.nl:openaire/28ddfe09-cefa-4ea7-af09-73ba1b8baae1","is_oa":true,"landing_page_url":"https://hdl.handle.net/1871.1/28ddfe09-cefa-4ea7-af09-73ba1b8baae1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401107","display_name":"VU Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Daza, D, Alivanistos, D, Mitra, P, Pijnenburg, T, Cochez, M & Groth, P 2023, 'BioBLP : a modular framework for learning on multimodal biomedical knowledge graphs', Journal of Biomedical Semantics, vol. 14, no. 1, 20. https://doi.org/10.1186/s13326-023-00301-y","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:research.vu.nl:openaire_cris_publications/28ddfe09-cefa-4ea7-af09-73ba1b8baae1","is_oa":true,"landing_page_url":"https://research.vu.nl/en/publications/28ddfe09-cefa-4ea7-af09-73ba1b8baae1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401107","display_name":"VU Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Daza, D, Alivanistos, D, Mitra, P, Pijnenburg, T, Cochez, M & Groth, P 2023, 'BioBLP : a modular framework for learning on multimodal biomedical knowledge graphs', Journal of Biomedical Semantics, vol. 14, no. 1, 20. https://doi.org/10.1186/s13326-023-00301-y","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:research.vu.nl:publications/28ddfe09-cefa-4ea7-af09-73ba1b8baae1","is_oa":true,"landing_page_url":"http://www.scopus.com/inward/record.url?scp=85178127157&partnerID=8YFLogxK","pdf_url":null,"source":{"id":"https://openalex.org/S4306401107","display_name":"VU Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I865915315","host_organization_name":"Vrije Universiteit Amsterdam","host_organization_lineage":["https://openalex.org/I865915315"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Daza, D, Alivanistos, D, Mitra, P, Pijnenburg, T, Cochez, M & Groth, P 2023, 'BioBLP : a modular framework for learning on multimodal biomedical knowledge graphs', Journal of Biomedical Semantics, vol. 14, no. 1, 20. https://doi.org/10.1186/s13326-023-00301-y","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/s13326-023-00301-y","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-023-00301-y","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-023-00301-y","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4389490952.pdf"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W90362830","https://openalex.org/W1529533208","https://openalex.org/W1966716734","https://openalex.org/W2009313526","https://openalex.org/W2067520428","https://openalex.org/W2104846587","https://openalex.org/W2116238734","https://openalex.org/W2137052779","https://openalex.org/W2153838454","https://openalex.org/W2165428180","https://openalex.org/W2256119113","https://openalex.org/W2302501749","https://openalex.org/W2526174222","https://openalex.org/W2576544908","https://openalex.org/W2580767461","https://openalex.org/W2739999456","https://openalex.org/W2759136286","https://openalex.org/W2770261575","https://openalex.org/W2799982041","https://openalex.org/W2885483808","https://openalex.org/W2911489562","https://openalex.org/W2937762029","https://openalex.org/W2949311246","https://openalex.org/W2951364005","https://openalex.org/W2963341956","https://openalex.org/W2963606508","https://openalex.org/W2964161331","https://openalex.org/W2966787092","https://openalex.org/W2972392269","https://openalex.org/W2972497960","https://openalex.org/W2980763157","https://openalex.org/W3006053005","https://openalex.org/W3011511325","https://openalex.org/W3036931110","https://openalex.org/W3088646411","https://openalex.org/W3092475443","https://openalex.org/W3093988619","https://openalex.org/W3131901903","https://openalex.org/W3154735894","https://openalex.org/W3158868742","https://openalex.org/W3165146808","https://openalex.org/W3176419593","https://openalex.org/W3177500196","https://openalex.org/W3177828909","https://openalex.org/W3205802642","https://openalex.org/W3208785685","https://openalex.org/W4200329746","https://openalex.org/W4210493972","https://openalex.org/W4224322651","https://openalex.org/W4225498452","https://openalex.org/W4226118422","https://openalex.org/W4226142803","https://openalex.org/W4280532615","https://openalex.org/W4285404905","https://openalex.org/W4287889449","https://openalex.org/W4287982101","https://openalex.org/W4290715635","https://openalex.org/W4294908374","https://openalex.org/W4362579348","https://openalex.org/W4379089597","https://openalex.org/W6739901393"],"related_works":["https://openalex.org/W73545470","https://openalex.org/W4224266612","https://openalex.org/W2383394264","https://openalex.org/W4320153225","https://openalex.org/W4293261942","https://openalex.org/W3125968744","https://openalex.org/W2167701463","https://openalex.org/W2110287964","https://openalex.org/W4307407935","https://openalex.org/W649759291"],"abstract_inverted_index":{"BACKGROUND:":[0],"Knowledge":[1],"graphs":[2],"(KGs)":[3],"are":[4,88,333],"an":[5,152],"important":[6],"tool":[7],"for":[8,23,79,126,156,311,351],"representing":[9],"complex":[10],"relationships":[11],"between":[12],"entities":[13,45,64,83,145,255,341],"in":[14,34,46,93,116,129,215,230,267,314,354],"the":[15,69,77,94,113,158,176,179,184,206,211,231,237,242,265,268,295,362],"biomedical":[16,47,80,108,167,309],"domain.":[17,96],"Several":[18],"methods":[19,38,195],"have":[20],"been":[21],"proposed":[22,212,286],"learning":[24,127,312],"embeddings":[25,128,182],"that":[26,63,87,134,196,222,247,273,281,322],"can":[27,65],"be":[28,66],"used":[29],"to":[30,90,100,103,302],"predict":[31],"new":[32],"links":[33],"such":[35,49,59],"graphs.":[36,55],"Some":[37],"ignore":[39],"valuable":[40],"attribute":[41,137,200,226,249,275,324],"data":[42,71,106,138,201,250,310,325],"associated":[43],"with":[44,68,118,131,146,241],"KGs,":[48,81],"as":[50],"protein":[51],"sequences,":[52],"or":[53],"molecular":[54],"Other":[56],"works":[57],"incorporate":[58,104],"data,":[60],"but":[61,331],"assume":[62],"represented":[67],"same":[70],"modality.":[72],"This":[73],"is":[74,277],"not":[75,198,224,327],"always":[76],"case":[78],"where":[82,358],"exhibit":[84],"heterogeneous":[85],"modalities":[86,141],"central":[89],"their":[91],"representation":[92],"subject":[95],"OBJECTIVE:":[97],"We":[98,121,149,162,270],"aim":[99],"understand":[101],"how":[102],"multimodal":[105,308],"into":[107,202],"KG":[109,168,363],"embeddings,":[110],"and":[111,174,189],"analyze":[112],"resulting":[114,180],"performance":[115,177,219,292,353],"comparison":[117],"traditional":[119],"methods.":[120,369],"propose":[122,151],"a":[123,166,257,278,317,336,343,349],"modular":[124],"framework":[125],"KGs":[130],"entity":[132,181],"attributes,":[133],"allows":[135,301],"encoding":[136],"of":[139,178,186,233,264,306,340,361],"different":[140,304],"while":[142,293],"also":[143,271],"supporting":[144],"missing":[147],"attributes.":[148],"additionally":[150],"efficient":[153],"pretraining":[154,287],"strategy":[155,288],"reducing":[157,294],"required":[159,296],"training":[160,297],"runtime.":[161,298],"train":[163],"models":[164],"using":[165],"containing":[169],"approximately":[170,262],"2":[171],"million":[172],"triples,":[173],"evaluate":[175],"on":[183,335],"tasks":[185,357],"link":[187,208,367],"prediction,":[188,192,236],"drug-protein":[190,234],"interaction":[191,235],"comparing":[193],"against":[194],"do":[197,223],"take":[199],"account.":[203],"RESULTS:":[204],"In":[205],"standard":[207],"prediction":[209,368],"evaluation,":[210],"method":[213,238],"results":[214,347],"competitive,":[216],"yet":[217],"lower":[218],"than":[220],"baselines":[221,253],"use":[225],"data.":[227],"When":[228],"evaluated":[229],"task":[232,280],"compares":[239],"favorably":[240],"baselines.":[243],"Further":[244],"analyses":[245],"show":[246],"incorporating":[248,307,323],"does":[251,326],"outperform":[252,329],"over":[254],"below":[256,342],"certain":[258],"node":[259],"degree,":[260],"comprising":[261],"75%":[263],"diseases":[266],"graph.":[269],"observe":[272],"optimizing":[274],"encoders":[276],"challenging":[279],"increases":[282],"optimization":[283],"costs.":[284],"Our":[285,346],"yields":[289],"significantly":[290],"higher":[291],"CONCLUSION:":[299],"BioBLP":[300],"investigate":[303],"ways":[305],"representations":[313],"KGs.":[315],"With":[316],"particular":[318],"implementation,":[319],"we":[320],"find":[321],"consistently":[328],"baselines,":[330],"improvements":[332],"obtained":[334],"comparatively":[337],"large":[338],"subset":[339],"specific":[344],"node-degree.":[345],"indicate":[348],"potential":[350],"improved":[352],"scientific":[355],"discovery":[356],"understudied":[359],"areas":[360],"would":[364],"benefit":[365],"from":[366]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":5}],"updated_date":"2026-05-26T13:28:51.108037","created_date":"2025-10-10T00:00:00"}
