{"id":"https://openalex.org/W4386331054","doi":"https://doi.org/10.1186/s13326-023-00293-9","title":"Automatic transparency evaluation for open knowledge extraction systems","display_name":"Automatic transparency evaluation for open knowledge extraction systems","publication_year":2023,"publication_date":"2023-08-31","ids":{"openalex":"https://openalex.org/W4386331054","doi":"https://doi.org/10.1186/s13326-023-00293-9","pmid":"https://pubmed.ncbi.nlm.nih.gov/37653549"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-023-00293-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-023-00293-9","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-023-00293-9","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-023-00293-9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5010189342","display_name":"Maryam Basereh","orcid":"https://orcid.org/0000-0002-1992-7098"},"institutions":[{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":true,"raw_author_name":"Maryam Basereh","raw_affiliation_strings":["School of Computing, Dublin City University, Dublin, Ireland. maryam.basereh@adaptcentre.ie","School of Computing, Dublin City University, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, Dublin City University, Dublin, Ireland. maryam.basereh@adaptcentre.ie","institution_ids":["https://openalex.org/I42934936"]},{"raw_affiliation_string":"School of Computing, Dublin City University, Dublin, Ireland","institution_ids":["https://openalex.org/I42934936"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061679230","display_name":"Annalina Caputo","orcid":"https://orcid.org/0000-0002-7144-8545"},"institutions":[{"id":"https://openalex.org/I42934936","display_name":"Dublin City University","ror":"https://ror.org/04a1a1e81","country_code":"IE","type":"education","lineage":["https://openalex.org/I42934936"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Annalina Caputo","raw_affiliation_strings":["School of Computing, Dublin City University, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, Dublin City University, Dublin, Ireland","institution_ids":["https://openalex.org/I42934936"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087699589","display_name":"Rob Brennan","orcid":"https://orcid.org/0000-0001-8236-362X"},"institutions":[{"id":"https://openalex.org/I100930933","display_name":"University College Dublin","ror":"https://ror.org/05m7pjf47","country_code":"IE","type":"education","lineage":["https://openalex.org/I100930933"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Rob Brennan","raw_affiliation_strings":["ADAPT Centre, School of Computer Science, University College Dublin, Dublin, Ireland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ADAPT Centre, School of Computer Science, University College Dublin, Dublin, Ireland","institution_ids":["https://openalex.org/I100930933"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5010189342"],"corresponding_institution_ids":["https://openalex.org/I42934936"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.9363,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.7794619,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"14","issue":"1","first_page":"12","last_page":"12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.15729999542236328,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.15729999542236328,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.1282999962568283,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.11559999734163284,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transparency","display_name":"Transparency (behavior)","score":0.9239319562911987},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.765378475189209},{"id":"https://openalex.org/keywords/trustworthiness","display_name":"Trustworthiness","score":0.5661443471908569},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5033723711967468},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.4771920442581177},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.40309202671051025},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.24228474497795105},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.2082078754901886},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.18308258056640625}],"concepts":[{"id":"https://openalex.org/C2780233690","wikidata":"https://www.wikidata.org/wiki/Q535347","display_name":"Transparency (behavior)","level":2,"score":0.9239319562911987},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.765378475189209},{"id":"https://openalex.org/C153701036","wikidata":"https://www.wikidata.org/wiki/Q659974","display_name":"Trustworthiness","level":2,"score":0.5661443471908569},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5033723711967468},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.4771920442581177},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.40309202671051025},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.24228474497795105},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.2082078754901886},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.18308258056640625}],"mesh":[{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000075403","descriptor_name":"Semantic Web","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s13326-023-00293-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-023-00293-9","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-023-00293-9","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:37653549","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/37653549","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10468861","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10468861","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10468861/pdf/13326_2023_Article_293.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:3a123ff3f7054a45a4b340f113944134","is_oa":true,"landing_page_url":"https://doaj.org/article/3a123ff3f7054a45a4b340f113944134","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 14, Iss 1, Pp 1-18 (2023)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/s13326-023-00293-9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-023-00293-9","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-023-00293-9","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G190371369","display_name":null,"funder_award_id":"18/CRT/6224","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G2563910032","display_name":null,"funder_award_id":"13/RC/2106","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G3993907298","display_name":"ADAPT: Centre for Digital Content Platform Research","funder_award_id":"13/RC/2106","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"},{"id":"https://openalex.org/G8019802486","display_name":"SFI Centre for Research Training in Digitally Enhanced Reality","funder_award_id":"18/CRT/6224","funder_id":"https://openalex.org/F4320320847","funder_display_name":"Science Foundation Ireland"}],"funders":[{"id":"https://openalex.org/F4320320847","display_name":"Science Foundation Ireland","ror":"https://ror.org/0271asj38"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4386331054.pdf"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1543276876","https://openalex.org/W1648303880","https://openalex.org/W1870959433","https://openalex.org/W1994682257","https://openalex.org/W1996730470","https://openalex.org/W2076618134","https://openalex.org/W2077663753","https://openalex.org/W2104583100","https://openalex.org/W2167541073","https://openalex.org/W2263936035","https://openalex.org/W2272981098","https://openalex.org/W2302501749","https://openalex.org/W2463986804","https://openalex.org/W2493343568","https://openalex.org/W2535189740","https://openalex.org/W2554719826","https://openalex.org/W2750144484","https://openalex.org/W2768432182","https://openalex.org/W2795530988","https://openalex.org/W2798497570","https://openalex.org/W2884686506","https://openalex.org/W2897042519","https://openalex.org/W2901231347","https://openalex.org/W2920887190","https://openalex.org/W2921764184","https://openalex.org/W2945976633","https://openalex.org/W2946690328","https://openalex.org/W2953522645","https://openalex.org/W2962772482","https://openalex.org/W2962850237","https://openalex.org/W2963095307","https://openalex.org/W2963847595","https://openalex.org/W2969493316","https://openalex.org/W2973652726","https://openalex.org/W2974071289","https://openalex.org/W2980904865","https://openalex.org/W2987816848","https://openalex.org/W2989512989","https://openalex.org/W3000616040","https://openalex.org/W3008058947","https://openalex.org/W3008128620","https://openalex.org/W3010336026","https://openalex.org/W3015977534","https://openalex.org/W3044410371","https://openalex.org/W3086986628","https://openalex.org/W3092775028","https://openalex.org/W3095500399","https://openalex.org/W3095646255","https://openalex.org/W3095874985","https://openalex.org/W3100279624","https://openalex.org/W3104279192","https://openalex.org/W3110850177","https://openalex.org/W3111488881","https://openalex.org/W3122548859","https://openalex.org/W3138819813","https://openalex.org/W3207123590","https://openalex.org/W3212368439","https://openalex.org/W4212792343","https://openalex.org/W4223612057","https://openalex.org/W4233080809","https://openalex.org/W4252064021","https://openalex.org/W4283155630","https://openalex.org/W4288076474","https://openalex.org/W4382793140","https://openalex.org/W6683761811","https://openalex.org/W6776225533"],"related_works":["https://openalex.org/W2093262417","https://openalex.org/W2123131699","https://openalex.org/W913131694","https://openalex.org/W650116260","https://openalex.org/W2378329187","https://openalex.org/W4390790060","https://openalex.org/W1603423477","https://openalex.org/W3209454962","https://openalex.org/W79697243","https://openalex.org/W2492278949"],"abstract_inverted_index":{"BACKGROUND:":[0],"This":[1,94,152,316],"paper":[2],"proposes":[3],"Cyrus,":[4,265],"a":[5,33,73,86,141,330],"new":[6],"transparency":[7,22,37,50,100,142,178,187,193,204,211,214,240,267,324,334,353,378],"evaluation":[8,68,90,95,205,354],"framework,":[9,91],"for":[10,39,102,144,242,295,365],"Open":[11],"Knowledge":[12],"Extraction":[13],"(OKE)":[14],"systems.":[15,41,66],"Cyrus":[16,43,98,233],"is":[17,45,69,307,317],"based":[18],"on":[19,169],"the":[20,49,59,121,138,177,184,192,196,222,235,247,250,301,311,318,323,366,377,380],"state-of-the-art":[21,64,77,297,302,372],"models":[23],"and":[24,85,157,162,198,209,254,257,304,340,359,384,404,409],"linked":[25,53,87,124,258,360,381],"data":[26,88,99,259,266,341,361,382,400,402],"quality":[27,89,260,342,362],"assessment":[28,83,105,363],"dimensions.":[29],"It":[30,346],"brings":[31],"together":[32],"comprehensive":[34,165,237,331],"view":[35,238],"of":[36,51,75,123,131,140,172,179,186,195,239,249,281,325,333,379],"dimensions":[38,101,241,270,335],"OKE":[40,65,110,147,243,298,326,373,406],"The":[42,67,213],"framework":[44,143,166],"used":[46],"to":[47,137,200,309,321,344,350,393],"evaluate":[48],"three":[52,63,76,296],"datasets,":[54],"which":[55,103,271],"are":[56,128,149,159,272],"built":[57],"from":[58,115],"same":[60],"corpus":[61],"by":[62,182,221,245],"automatically":[70,294,390],"performed":[71],"using":[72,300],"combination":[74],"FAIRness":[78,358],"(Findability,":[79],"Accessibility,":[80],"Interoperability,":[81],"Reusability)":[82],"tools":[84,106,364],"called":[92],"Luzzu.":[93],"includes":[96,268],"six":[97,280],"existing":[104,357],"could":[107],"be":[108,389],"identified.":[109],"systems":[111,127,148,181,244,327,374],"extract":[112],"structured":[113],"knowledge":[114,133],"unstructured":[116],"or":[117],"semi-structured":[118],"text":[119],"in":[120,274,376,396],"form":[122],"data.":[125],"These":[126],"fundamental":[129],"components":[130],"advanced":[132],"services.":[134],"However,":[135],"due":[136],"lack":[139],"OKE,":[145],"most":[146],"not":[150,160],"transparent.":[151],"means":[153],"that":[154,328,355,371,385],"their":[155],"processes":[156],"outcomes":[158],"understandable":[161],"interpretable.":[163],"A":[164],"sheds":[167],"light":[168],"different":[170,180],"aspects":[171],"transparency,":[173],"allows":[174],"comparison":[175],"between":[176],"supporting":[183],"development":[185],"scores,":[188],"gives":[189],"insight":[190],"into":[191],"weaknesses":[194],"system,":[197],"ways":[199],"improve":[201],"them.":[202],"Automatic":[203],"helps":[206],"with":[207],"scalability":[208],"facilitates":[210],"assessment.":[212],"problem":[215],"has":[216],"been":[217,292],"identified":[218,308],"as":[219],"critical":[220],"European":[223],"Union":[224],"Trustworthy":[225],"Artificial":[226],"Intelligence":[227],"(AI)":[228],"guidelines.":[229],"In":[230,264,277],"this":[231,278],"paper,":[232,279],"provides":[234,329],"first":[236,319,367],"merging":[246],"perspectives":[248],"FAccT":[251],"(Fairness,":[252],"Accountability,":[253],"Transparency),":[255],"FAIR,":[256],"research":[261,320],"communities.":[262],"RESULTS:":[263],"ten":[269],"grouped":[273],"two":[275],"categories.":[276],"these":[282,386],"dimensions,":[283],"i.e.,":[284],"provenance,":[285],"interpretability,":[286],"understandability,":[287],"licensing,":[288],"availability,":[289],"interlinking":[290],"have":[291,310],"evaluated":[293],"systems,":[299],"metrics":[303],"tools.":[305],"Covid-on-the-Web":[306],"highest":[312],"mean":[313],"transparency.":[314,345],"CONCLUSIONS:":[315],"study":[322],"set":[332],"spanning":[336],"ethics,":[337],"trustworthy":[338,397],"AI,":[339,398],"approaches":[343],"also":[347],"demonstrates":[348],"how":[349],"perform":[351],"automated":[352],"combines":[356],"time.":[368],"We":[369],"show":[370],"vary":[375],"generated":[383],"differences":[387],"can":[388],"quantified":[391],"leading":[392],"potential":[394],"applications":[395],"compliance,":[399],"protection,":[401],"governance,":[403],"future":[405],"system":[407],"design":[408],"testing.":[410]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-06-22T08:00:12.763002","created_date":"2025-10-10T00:00:00"}
