{"id":"https://openalex.org/W4321748975","doi":"https://doi.org/10.1186/s13326-023-00283-x","title":"The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond","display_name":"The Environmental Conditions, Treatments, and Exposures Ontology (ECTO): connecting toxicology and exposure to human health and beyond","publication_year":2023,"publication_date":"2023-02-24","ids":{"openalex":"https://openalex.org/W4321748975","doi":"https://doi.org/10.1186/s13326-023-00283-x","pmid":"https://pubmed.ncbi.nlm.nih.gov/36823605"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-023-00283-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-023-00283-x","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-023-00283-x","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-023-00283-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068280078","display_name":"Lauren Chan","orcid":"https://orcid.org/0000-0002-7463-6306"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lauren E. Chan","raw_affiliation_strings":["Oregon State University, Corvallis, OR, 97331, USA. chanl@oregonstate.edu","Oregon State University, Corvallis, OR, 97331, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oregon State University, Corvallis, OR, 97331, USA. chanl@oregonstate.edu","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"Oregon State University, Corvallis, OR, 97331, USA","institution_ids":["https://openalex.org/I131249849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028696519","display_name":"Anne Thessen","orcid":"https://orcid.org/0000-0002-2908-3327"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anne E. Thessen","raw_affiliation_strings":["Oregon State University, Corvallis, OR, 97331, USA","University of Colorado Anschutz Medical Campus, Aurora, CO, 80054, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oregon State University, Corvallis, OR, 97331, USA","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"University of Colorado Anschutz Medical Campus, Aurora, CO, 80054, USA","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005828535","display_name":"William D. Duncan","orcid":"https://orcid.org/0000-0001-9625-1899"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William D. Duncan","raw_affiliation_strings":["University of Florida, Gainesville, FL, 32610, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Florida, Gainesville, FL, 32610, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040603724","display_name":"Nicolas Matentzoglu","orcid":"https://orcid.org/0000-0002-7356-1779"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nicolas Matentzoglu","raw_affiliation_strings":["Semanticly, Athens, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Semanticly, Athens, Greece","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084726442","display_name":"Charles Schmitt","orcid":"https://orcid.org/0000-0002-3148-2263"},"institutions":[{"id":"https://openalex.org/I4210095140","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210095140"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Charles Schmitt","raw_affiliation_strings":["National Institute of Environmental Health Sciences, Durham, NC, 27709, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Institute of Environmental Health Sciences, Durham, NC, 27709, USA","institution_ids":["https://openalex.org/I4210095140"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013500904","display_name":"Cynthia Grondin","orcid":"https://orcid.org/0000-0002-4642-1738"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cynthia J. Grondin","raw_affiliation_strings":["North Carolina State University, Raleigh, NC, 27965, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"North Carolina State University, Raleigh, NC, 27965, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041814853","display_name":"Nicole Vasilevsky","orcid":"https://orcid.org/0000-0001-5208-3432"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicole Vasilevsky","raw_affiliation_strings":["University of Colorado Anschutz Medical Campus, Aurora, CO, 80054, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Colorado Anschutz Medical Campus, Aurora, CO, 80054, USA","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050577151","display_name":"Julie A. McMurry","orcid":"https://orcid.org/0000-0002-9353-5498"},"institutions":[{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julie A. McMurry","raw_affiliation_strings":["University of Colorado Anschutz Medical Campus, Aurora, CO, 80054, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Colorado Anschutz Medical Campus, Aurora, CO, 80054, USA","institution_ids":["https://openalex.org/I51713134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033225381","display_name":"Peter N. Robinson","orcid":"https://orcid.org/0000-0002-0736-9199"},"institutions":[{"id":"https://openalex.org/I4210115256","display_name":"Jackson Laboratory","ror":"https://ror.org/021sy4w91","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210115256"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter N. Robinson","raw_affiliation_strings":["The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Jackson Laboratory for Genomic Medicine, Farmington, CT, 06032, USA","institution_ids":["https://openalex.org/I4210115256"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002223413","display_name":"Chris Mungall","orcid":"https://orcid.org/0000-0002-6601-2165"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher J. Mungall","raw_affiliation_strings":["Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064320417","display_name":"Melissa Haendel","orcid":"https://orcid.org/0000-0001-9114-8737"},"institutions":[{"id":"https://openalex.org/I131249849","display_name":"Oregon State University","ror":"https://ror.org/00ysfqy60","country_code":"US","type":"education","lineage":["https://openalex.org/I131249849"]},{"id":"https://openalex.org/I51713134","display_name":"University of Colorado Anschutz Medical Campus","ror":"https://ror.org/03wmf1y16","country_code":"US","type":"education","lineage":["https://openalex.org/I51713134"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melissa A. Haendel","raw_affiliation_strings":["Oregon State University, Corvallis, OR, 97331, USA","University of Colorado Anschutz Medical Campus, Aurora, CO, 80054, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oregon State University, Corvallis, OR, 97331, USA","institution_ids":["https://openalex.org/I131249849"]},{"raw_affiliation_string":"University of Colorado Anschutz Medical Campus, Aurora, CO, 80054, USA","institution_ids":["https://openalex.org/I51713134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5068280078"],"corresponding_institution_ids":["https://openalex.org/I131249849"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":2.1805,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.87353742,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"14","issue":"1","first_page":"3","last_page":"3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9646999835968018,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9646999835968018,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.00930000003427267,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.005799999926239252,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8324730396270752},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7513465881347656},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.5981013178825378},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5632587671279907},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.5348607301712036},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4387318789958954},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.4346712827682495},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.332800030708313},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.28619322180747986},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.2121567726135254},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.20050522685050964},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.19462719559669495}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8324730396270752},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7513465881347656},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.5981013178825378},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5632587671279907},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.5348607301712036},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4387318789958954},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.4346712827682495},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.332800030708313},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.28619322180747986},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.2121567726135254},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.20050522685050964},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.19462719559669495},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s13326-023-00283-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-023-00283-x","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-023-00283-x","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:36823605","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36823605","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:escholarship.org:ark:/13030/qt17c1221x","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/17c1221x","pdf_url":"https://escholarship.org/content/qt17c1221x/qt17c1221x.pdf","source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, vol 14, iss 1","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9951428","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9951428","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC9951428/pdf/13326_2023_Article_283.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:4d854f6d4a15453d96f678a86e9c0e6b","is_oa":true,"landing_page_url":"https://doaj.org/article/4d854f6d4a15453d96f678a86e9c0e6b","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 14, Iss 1, Pp 1-12 (2023)","raw_type":"article"},{"id":"pmh:oai:mouseion.jax.org:stfb2023-1034","is_oa":true,"landing_page_url":"https://mouseion.jax.org/stfb2023/29","pdf_url":null,"source":{"id":"https://openalex.org/S4377196421","display_name":"The Mouseion at the JAXlibrary (Jackson Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210115256","host_organization_name":"Jackson Laboratory","host_organization_lineage":["https://openalex.org/I4210115256"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Faculty Research 2023","raw_type":"text"}],"best_oa_location":{"id":"doi:10.1186/s13326-023-00283-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-023-00283-x","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-023-00283-x","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7616222319","display_name":null,"funder_award_id":"5 R24 OD011883","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8299004767","display_name":null,"funder_award_id":"R24 OD011883","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4321748975.pdf"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1566952502","https://openalex.org/W1935434993","https://openalex.org/W1986613416","https://openalex.org/W2021913097","https://openalex.org/W2036713904","https://openalex.org/W2093606987","https://openalex.org/W2097877306","https://openalex.org/W2122924260","https://openalex.org/W2142678031","https://openalex.org/W2150837319","https://openalex.org/W2159583324","https://openalex.org/W2261812172","https://openalex.org/W2302501749","https://openalex.org/W2521644033","https://openalex.org/W2530164615","https://openalex.org/W2558643140","https://openalex.org/W2558649973","https://openalex.org/W2558838260","https://openalex.org/W2624086276","https://openalex.org/W2769436351","https://openalex.org/W2770044072","https://openalex.org/W2773956512","https://openalex.org/W2903298154","https://openalex.org/W2915806464","https://openalex.org/W3043274284","https://openalex.org/W3114154292","https://openalex.org/W3124643075","https://openalex.org/W3165607535","https://openalex.org/W4212919921","https://openalex.org/W4287020185","https://openalex.org/W6611027847"],"related_works":["https://openalex.org/W1506177826","https://openalex.org/W2726617685","https://openalex.org/W2127299687","https://openalex.org/W2111194626","https://openalex.org/W1562796463","https://openalex.org/W2074013882","https://openalex.org/W2399880385","https://openalex.org/W2397553363","https://openalex.org/W1794266373","https://openalex.org/W4206428734"],"abstract_inverted_index":{"BACKGROUND:":[0],"Evaluating":[1],"the":[2,53,80,159,164,227,247,299],"impact":[3],"of":[4,14,24,43,56,64,100,174,278,285,288],"environmental":[5,57,119,148,188,195,238,273],"exposures":[6,143],"on":[7,92],"organism":[8],"health":[9,33,58,120,274,291,294],"is":[10,18,113,136,169,198,209],"a":[11,41,62,88,98,172,282],"key":[12],"goal":[13],"modern":[15],"biomedicine":[16],"and":[17,27,39,84,102,127,152,177,184,191,194,202,214,250,262,275,293],"critically":[19],"important":[20],"in":[21,29,117,224],"an":[22,137,199],"age":[23],"greater":[25],"pollution":[26],"chemicals":[28],"our":[30],"environment.":[31],"Environmental":[32,81],"utilizes":[34,158],"many":[35],"different":[36],"research":[37,110],"methods":[38],"generates":[40],"variety":[42],"data":[44,121,154],"types.":[45],"However,":[46],"to":[47,61,123,231,258,268,297],"date,":[48],"no":[49],"comprehensive":[50],"database":[51],"represents":[52],"full":[54],"spectrum":[55],"data.":[59],"Due":[60],"lack":[63],"interoperability":[65],"between":[66,272],"databases,":[67],"tools":[68],"for":[69,115,129,140,211,243,246,302],"integrating":[70],"these":[71],"resources":[72,122],"are":[73],"needed.":[74],"In":[75],"this":[76],"manuscript":[77],"we":[78],"present":[79],"Conditions,":[82],"Treatments,":[83],"Exposures":[85],"Ontology":[86,166,204,230,264],"(ECTO),":[87],"species-agnostic":[89],"ontology":[90,138,207],"focused":[91],"exposure":[93,189],"events":[94],"that":[95,208,304],"occur":[96],"as":[97,106,145,240,242,309],"result":[99],"natural":[101],"experimental":[103],"processes,":[104],"such":[105,144],"diet,":[107],"work,":[108],"or":[109,235],"activities.":[111],"ECTO":[112,135,157,168,197,219,257,280],"intended":[114],"use":[116],"harmonizing":[118],"support":[124],"cross-study":[125],"integration":[126],"inference":[128],"mechanism":[130],"discovery.":[131],"METHODS":[132],"AND":[133],"FINDINGS:":[134],"designed":[139,210],"describing":[141],"organismal":[142],"toxicological":[146],"research,":[147],"variables,":[149],"dietary":[150],"features,":[151],"patient-reported":[153],"from":[155],"surveys.":[156],"base":[160],"model":[161],"established":[162],"within":[163,226],"Exposure":[165],"(ExO).":[167],"developed":[170],"using":[171],"combination":[173],"manual":[175],"curation":[176],"Dead":[178],"Simple":[179],"OWL":[180],"Design":[181],"Patterns":[182],"(DOSDP),":[183],"contains":[185],"over":[186],"2700":[187],"terms,":[190],"incorporates":[192],"chemical":[193],"ontologies.":[196,218],"Open":[200,260],"Biological":[201,261],"Biomedical":[203,263],"(OBO)":[205,265],"Foundry":[206,266],"interoperability,":[212],"reuse,":[213],"axiomatization":[215],"with":[216],"other":[217,276],"terms":[220],"have":[221,305],"been":[222,306],"utilized":[223],"axioms":[225],"Mondo":[228],"Disease":[229],"represent":[232],"diseases":[233],"caused":[234],"influenced":[236],"by":[237],"factors,":[239],"well":[241],"survey":[244],"encoding":[245],"Personalized":[248],"Environment":[249],"Genes":[251],"Study":[252],"(PEGS).":[253],"CONCLUSIONS:":[254],"We":[255],"constructed":[256],"meet":[259],"principles":[267],"increase":[269],"translation":[270],"opportunities":[271],"areas":[277,303],"biology.":[279],"has":[281],"growing":[283],"community":[284],"contributors":[286],"consisting":[287],"toxicologists,":[289],"public":[290],"epidemiologists,":[292],"care":[295],"providers":[296],"provide":[298],"necessary":[300],"expertise":[301],"identified":[307],"previously":[308],"gaps.":[310]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
