{"id":"https://openalex.org/W4291178508","doi":"https://doi.org/10.1186/s13326-022-00276-2","title":"Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs","display_name":"Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs","publication_year":2022,"publication_date":"2022-08-13","ids":{"openalex":"https://openalex.org/W4291178508","doi":"https://doi.org/10.1186/s13326-022-00276-2","pmid":"https://pubmed.ncbi.nlm.nih.gov/35964149"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-022-00276-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-022-00276-2","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-022-00276-2","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-022-00276-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025882641","display_name":"Warren Manuel","orcid":null},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Warren Manuel","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083171882","display_name":"Rashmie Abeysinghe","orcid":"https://orcid.org/0000-0001-9297-9540"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rashmie Abeysinghe","raw_affiliation_strings":["Department of Neurology, The University of Texas Health Science Center at Houston, Houston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurology, The University of Texas Health Science Center at Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024742201","display_name":"Yongqun He","orcid":"https://orcid.org/0000-0001-9189-9661"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan\u2013Ann Arbor","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yongqun He","raw_affiliation_strings":["Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Unit for Laboratory Animal Medicine, Department of Microbiology and Immunology, Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076058129","display_name":"Cui Tao","orcid":"https://orcid.org/0000-0002-4267-1924"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cui Tao","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I919571938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049834185","display_name":"Licong Cui","orcid":"https://orcid.org/0000-0001-5549-8780"},"institutions":[{"id":"https://openalex.org/I919571938","display_name":"The University of Texas Health Science Center at Houston","ror":"https://ror.org/03gds6c39","country_code":"US","type":"education","lineage":["https://openalex.org/I919571938"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Licong Cui","raw_affiliation_strings":["School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA. licong.cui@uth.tmc.edu","School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA. licong.cui@uth.tmc.edu","institution_ids":[]},{"raw_affiliation_string":"School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA","institution_ids":["https://openalex.org/I919571938"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5025882641"],"corresponding_institution_ids":["https://openalex.org/I919571938"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.52,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.61635983,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"13","issue":"1","first_page":"22","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8970000147819519,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8970000147819519,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.03269999846816063,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12881","display_name":"linguistics and terminology studies","score":0.014700000174343586,"subfield":{"id":"https://openalex.org/subfields/1203","display_name":"Language and Linguistics"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/missing-data","display_name":"Missing data","score":0.7847336530685425},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7672197818756104},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7610131502151489},{"id":"https://openalex.org/keywords/term","display_name":"Term (time)","score":0.5689608454704285},{"id":"https://openalex.org/keywords/quality-assurance","display_name":"Quality assurance","score":0.5609752535820007},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.4985647201538086},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.49548137187957764},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.46648672223091125},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.463931143283844},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.46213191747665405},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4477637708187103},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4325902462005615},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.33675524592399597},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2702175974845886},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.20266303420066833},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09957429766654968},{"id":"https://openalex.org/keywords/service","display_name":"Service (business)","score":0.08153438568115234}],"concepts":[{"id":"https://openalex.org/C9357733","wikidata":"https://www.wikidata.org/wiki/Q6878417","display_name":"Missing data","level":2,"score":0.7847336530685425},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7672197818756104},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7610131502151489},{"id":"https://openalex.org/C61797465","wikidata":"https://www.wikidata.org/wiki/Q1188986","display_name":"Term (time)","level":2,"score":0.5689608454704285},{"id":"https://openalex.org/C106436119","wikidata":"https://www.wikidata.org/wiki/Q836575","display_name":"Quality assurance","level":3,"score":0.5609752535820007},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.4985647201538086},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.49548137187957764},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.46648672223091125},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.463931143283844},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.46213191747665405},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4477637708187103},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4325902462005615},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.33675524592399597},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2702175974845886},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.20266303420066833},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09957429766654968},{"id":"https://openalex.org/C2780378061","wikidata":"https://www.wikidata.org/wiki/Q25351891","display_name":"Service (business)","level":2,"score":0.08153438568115234},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C136264566","wikidata":"https://www.wikidata.org/wiki/Q159810","display_name":"Economy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000255","descriptor_name":"Adenosine Triphosphate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000255","descriptor_name":"Adenosine Triphosphate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000255","descriptor_name":"Adenosine Triphosphate","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014612","descriptor_name":"Vaccines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s13326-022-00276-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-022-00276-2","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-022-00276-2","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:35964149","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35964149","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:digitalcommons.library.tmc.edu:uthmed_docs-2378","is_oa":false,"landing_page_url":"https://digitalcommons.library.tmc.edu/uthmed_docs/1400","pdf_url":null,"source":{"id":"https://openalex.org/S4377196655","display_name":"Digital Commons-TMC (Texas Medical Center)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1337852284","host_organization_name":"Texas Medical Center","host_organization_lineage":["https://openalex.org/I1337852284"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal Articles","raw_type":"text"},{"id":"pmh:oai:deepblue.lib.umich.edu:2027.42/174102","is_oa":false,"landing_page_url":"https://hdl.handle.net/2027.42/174102","pdf_url":null,"source":{"id":"https://openalex.org/S4306400393","display_name":"Deep Blue (University of Michigan)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I27837315","host_organization_name":"University of Michigan","host_organization_lineage":["https://openalex.org/I27837315"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:6468236ddcad4a3a934d3827cc1811d5","is_oa":true,"landing_page_url":"https://doaj.org/article/6468236ddcad4a3a934d3827cc1811d5","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 13, Iss 1, Pp 1-11 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9375092","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9375092","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-022-00276-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-022-00276-2","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-022-00276-2","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G5127676142","display_name":null,"funder_award_id":"R01LM013335","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5589205622","display_name":null,"funder_award_id":"R01LM013335","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G76504394","display_name":null,"funder_award_id":"R01NS116287","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7921868684","display_name":null,"funder_award_id":"R01NS116287","funder_id":"https://openalex.org/F4320337359","funder_display_name":"National Institute of Neurological Disorders and Stroke"},{"id":"https://openalex.org/G8623505872","display_name":null,"funder_award_id":"2047001","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"},{"id":"https://openalex.org/F4320337359","display_name":"National Institute of Neurological Disorders and Stroke","ror":"https://ror.org/01s5ya894"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4291178508.pdf","grobid_xml":"https://content.openalex.org/works/W4291178508.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W46109541","https://openalex.org/W136568393","https://openalex.org/W1496540677","https://openalex.org/W1989425151","https://openalex.org/W2086220125","https://openalex.org/W2090577544","https://openalex.org/W2103017472","https://openalex.org/W2106537457","https://openalex.org/W2118801479","https://openalex.org/W2125904022","https://openalex.org/W2142635855","https://openalex.org/W2142678031","https://openalex.org/W2156039063","https://openalex.org/W2160603580","https://openalex.org/W2161778764","https://openalex.org/W2163827272","https://openalex.org/W2187363965","https://openalex.org/W2261812172","https://openalex.org/W2486258755","https://openalex.org/W2495004097","https://openalex.org/W2507623806","https://openalex.org/W2591123247","https://openalex.org/W2749087070","https://openalex.org/W2772613326","https://openalex.org/W2778655071","https://openalex.org/W2785571806","https://openalex.org/W2786584201","https://openalex.org/W2791800558","https://openalex.org/W2914040075","https://openalex.org/W3005082424","https://openalex.org/W3112600195","https://openalex.org/W4205885810","https://openalex.org/W4206342372","https://openalex.org/W4287435081"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W4380150146","https://openalex.org/W3024870410","https://openalex.org/W2410652950","https://openalex.org/W2358755282","https://openalex.org/W2759030965"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,208],"Vaccine":[2],"Ontology":[3],"(VO)":[4],"is":[5,24,32,60,126,137,214],"a":[6,18,129,141,176,181],"biomedical":[7],"ontology":[8],"that":[9,22,36,87,191,211],"standardizes":[10],"vaccine":[11],"annotation.":[12],"Errors":[13],"in":[14,93,201,217,222],"VO":[15,31,101,177,202],"will":[16],"affect":[17],"multitude":[19],"of":[20,30,65,78,100,150,160,184,193,205],"applications":[21],"it":[23,37],"being":[25],"used":[26],"in.":[27],"Quality":[28],"assurance":[29,77],"imperative":[33],"to":[34,42,48,73,139,165],"ensure":[35],"provides":[38],"accurate":[39],"domain":[40,178],"knowledge":[41],"these":[43],"downstream":[44],"tasks.":[45],"Manual":[46],"review":[47,174],"identify":[49,166],"and":[50,105,132],"fix":[51],"quality":[52,76],"issues":[53],"(such":[54],"as":[55],"missing":[56,90,143,169,187,198,219],"hierarchical":[57],"is-a":[58,91,144,170,188,199,220],"relations)":[59],"challenging":[61],"given":[62],"the":[63,66,75,123,147,157,194],"complexity":[64],"ontology.":[67],"Automated":[68],"approaches":[69],"are":[70],"highly":[71,215],"desirable":[72],"facilitate":[74],"VO.":[79,94,223],"METHODS:":[80],"We":[81],"developed":[82],"an":[83,112,133],"automated":[84],"lexical":[85,120],"approach":[86,155,213],"identifies":[88],"potentially":[89,142,168,186],"relations":[92,189,200],"First,":[95],"we":[96,162],"construct":[97],"two":[98],"types":[99],"concept-pairs:":[102],"(1)":[103],"linked;":[104],"(2)":[106],"unlinked.":[107],"Each":[108],"concept-pair":[109,131],"further":[110],"derives":[111],"Acquired":[113],"Term":[114],"Pair":[115],"(ATP)":[116],"based":[117],"on":[118,156,180],"their":[119],"features.":[121],"If":[122],"same":[124],"ATP":[125],"obtained":[127],"by":[128,175],"linked":[130],"unlinked":[134,148],"concept-pair,":[135],"this":[136,154],"considered":[138],"indicate":[140,210],"relation":[145,221],"between":[146],"pair":[149],"concepts.":[151],"RESULTS:":[152],"Applying":[153],"1.1.192":[158],"version":[159],"VO,":[161],"were":[163,196],"able":[164],"232":[167],"relations.":[171],"A":[172],"manual":[173],"expert":[179],"random":[182],"sample":[183],"70":[185],"revealed":[190],"65":[192],"cases":[195],"valid":[197],"(a":[203],"precision":[204],"92.86%).":[206],"CONCLUSIONS:":[207],"results":[209],"our":[212],"effective":[216],"identifying":[218]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
