{"id":"https://openalex.org/W4281969489","doi":"https://doi.org/10.1186/s13326-022-00267-3","title":"Exploiting document graphs for inter sentence relation extraction","display_name":"Exploiting document graphs for inter sentence relation extraction","publication_year":2022,"publication_date":"2022-06-03","ids":{"openalex":"https://openalex.org/W4281969489","doi":"https://doi.org/10.1186/s13326-022-00267-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/35659292"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-022-00267-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-022-00267-3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-022-00267-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-022-00267-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057642796","display_name":"Hoang-Quynh Le","orcid":"https://orcid.org/0000-0002-1778-0600"},"institutions":[{"id":"https://openalex.org/I67868205","display_name":"VNU University of Science","ror":"https://ror.org/05w54hk79","country_code":"VN","type":"education","lineage":["https://openalex.org/I177233841","https://openalex.org/I67868205"]}],"countries":["VN"],"is_corresponding":true,"raw_author_name":"Hoang-Quynh Le","raw_affiliation_strings":["Faculty of Information Technology, VNU University of Engineering and Technology, Hanoi, Vietnam. lhquynh@vnu.edu.vn","Faculty of Information Technology, VNU University of Engineering and Technology, Hanoi, Vietnam"],"raw_orcid":"https://orcid.org/0000-0002-1778-0600","affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, VNU University of Engineering and Technology, Hanoi, Vietnam. lhquynh@vnu.edu.vn","institution_ids":["https://openalex.org/I67868205"]},{"raw_affiliation_string":"Faculty of Information Technology, VNU University of Engineering and Technology, Hanoi, Vietnam","institution_ids":["https://openalex.org/I67868205"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086574827","display_name":"Duy-Cat Can","orcid":"https://orcid.org/0000-0002-6861-2893"},"institutions":[{"id":"https://openalex.org/I67868205","display_name":"VNU University of Science","ror":"https://ror.org/05w54hk79","country_code":"VN","type":"education","lineage":["https://openalex.org/I177233841","https://openalex.org/I67868205"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Duy-Cat Can","raw_affiliation_strings":["Faculty of Information Technology, VNU University of Engineering and Technology, Hanoi, Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Information Technology, VNU University of Engineering and Technology, Hanoi, Vietnam","institution_ids":["https://openalex.org/I67868205"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073413742","display_name":"Nigel Collier","orcid":"https://orcid.org/0000-0002-7230-4164"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nigel Collier","raw_affiliation_strings":["Department of Theoretical and Applied Linguistics, University of Cambridge, Cambridge, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Theoretical and Applied Linguistics, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5057642796"],"corresponding_institution_ids":["https://openalex.org/I67868205"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.3465,"has_fulltext":true,"cited_by_count":5,"citation_normalized_percentile":{"value":0.5491455,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"13","issue":"1","first_page":"15","last_page":"15"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7843999862670898,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7843999862670898,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.14970000088214874,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.009800000116229057,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sentence","display_name":"Sentence","score":0.8444726467132568},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8425158262252808},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.7749277353286743},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.7022150754928589},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6561837792396545},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.507412850856781},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.42367786169052124},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4192034602165222},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.36338454484939575},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.17385795712471008}],"concepts":[{"id":"https://openalex.org/C2777530160","wikidata":"https://www.wikidata.org/wiki/Q41796","display_name":"Sentence","level":2,"score":0.8444726467132568},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8425158262252808},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.7749277353286743},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.7022150754928589},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6561837792396545},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.507412850856781},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.42367786169052124},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4192034602165222},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.36338454484939575},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.17385795712471008},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1186/s13326-022-00267-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-022-00267-3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-022-00267-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:35659292","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35659292","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:doaj.org/article:a69a1196792b4f42ab8086c0a7ce2956","is_oa":true,"landing_page_url":"https://doaj.org/article/a69a1196792b4f42ab8086c0a7ce2956","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 13, Iss 1, Pp 1-15 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9166375","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9166375","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/337782","is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/337782","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:www.repository.cam.ac.uk:1810/338910","is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/338910","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"nlmid: 101531992","raw_type":"Article"},{"id":"doi:10.17863/cam.85191","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.85191","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.17863/cam.86317","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.86317","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1186/s13326-022-00267-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-022-00267-3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-022-00267-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4281969489.pdf","grobid_xml":"https://content.openalex.org/works/W4281969489.grobid-xml"},"referenced_works_count":43,"referenced_works":["https://openalex.org/W55204438","https://openalex.org/W140325011","https://openalex.org/W1502957213","https://openalex.org/W1847618513","https://openalex.org/W2138768461","https://openalex.org/W2142016317","https://openalex.org/W2147800946","https://openalex.org/W2153138487","https://openalex.org/W2156876426","https://openalex.org/W2169491861","https://openalex.org/W2234895705","https://openalex.org/W2335791510","https://openalex.org/W2341742436","https://openalex.org/W2346452181","https://openalex.org/W2398682428","https://openalex.org/W2485374661","https://openalex.org/W2489487449","https://openalex.org/W2493916176","https://openalex.org/W2514172335","https://openalex.org/W2527712604","https://openalex.org/W2560748602","https://openalex.org/W2595551253","https://openalex.org/W2598789561","https://openalex.org/W2599674900","https://openalex.org/W2604372572","https://openalex.org/W2607303097","https://openalex.org/W2615753704","https://openalex.org/W2753872793","https://openalex.org/W2759609474","https://openalex.org/W2785001576","https://openalex.org/W2794309877","https://openalex.org/W2801290881","https://openalex.org/W2805089341","https://openalex.org/W2887428522","https://openalex.org/W2891434004","https://openalex.org/W2913556077","https://openalex.org/W2930957955","https://openalex.org/W2937423263","https://openalex.org/W3105625590","https://openalex.org/W4235691511","https://openalex.org/W4239422289","https://openalex.org/W4246765470","https://openalex.org/W4253856501"],"related_works":["https://openalex.org/W2805262146","https://openalex.org/W4379517534","https://openalex.org/W842810586","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W4236762297","https://openalex.org/W2369351710","https://openalex.org/W2594363579"],"abstract_inverted_index":{"BACKGROUND:":[0],"Most":[1],"previous":[2],"relation":[3,64],"extraction":[4],"(RE)":[5],"studies":[6],"have":[7,14],"focused":[8],"on":[9,97,186],"intra":[10,62],"sentence":[11,22,63,94,119,179],"relations":[12,16,25,120,180],"and":[13,52,107,117,133,146,159,165,181,189],"ignored":[15],"that":[17,43],"span":[18],"sentences,":[19,87],"i.e.":[20],"inter":[21,93,118,178],"relations.":[23,95],"Such":[24],"connect":[26],"entities":[27],"at":[28],"the":[29,98,105,135,139,157,183,193],"document":[30,89],"level":[31],"rather":[32],"than":[33,56],"as":[34],"relational":[35],"facts":[36,42],"in":[37,60,121],"a":[38,79,83],"single":[39],"sentence.":[40],"Extracting":[41],"are":[44,70,128],"expressed":[45],"across":[46],"sentences":[47],"leads":[48],"to":[49,73,91,113,130,155,174,192],"some":[50],"challenges":[51],"requires":[53],"different":[54],"approaches":[55,132],"those":[57],"usually":[58],"applied":[59],"recent":[61,67],"extraction.":[65],"Despite":[66],"results,":[68],"there":[69],"still":[71],"limitations":[72],"be":[74],"overcome.":[75],"RESULTS:":[76],"We":[77],"present":[78],"novel":[80,111],"representation":[81,172],"for":[82],"sequence":[84],"of":[85,109,141,161,177],"consecutive":[86],"namely":[88],"subgraph,":[90],"extract":[92,114,175],"Experiments":[96,150],"BioCreative":[99],"V":[100],"Chemical-Disease":[101],"Relation":[102],"corpus":[103],"demonstrate":[104],"advantages":[106],"robustness":[108],"our":[110],"system":[112],"both":[115,187],"intra-":[116],"biomedical":[122],"literature":[123],"abstracts.":[124],"The":[125],"experimental":[126],"results":[127],"comparable":[129],"state-of-the-art":[131],"show":[134],"potential":[136],"by":[137],"demonstrating":[138],"effectiveness":[140],"graphs,":[142],"deep":[143],"learning-based":[144],"model,":[145],"other":[147],"processing":[148],"techniques.":[149],"were":[151],"also":[152],"carried":[153],"out":[154],"verify":[156],"rationality":[158],"impact":[160],"various":[162],"additional":[163],"information":[164],"model":[166,184],"components.":[167],"CONCLUSIONS:":[168],"Our":[169],"proposed":[170],"graph-based":[171],"helps":[173],"\u223c50%":[176],"boosts":[182],"performance":[185],"precision":[188],"recall":[190],"compared":[191],"baseline":[194],"model.":[195]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":3}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
