{"id":"https://openalex.org/W4206657655","doi":"https://doi.org/10.1186/s13326-021-00253-1","title":"End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach","display_name":"End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach","publication_year":2022,"publication_date":"2022-01-06","ids":{"openalex":"https://openalex.org/W4206657655","doi":"https://doi.org/10.1186/s13326-021-00253-1"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-021-00253-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-021-00253-1","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-021-00253-1","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-021-00253-1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029559772","display_name":"Sheeba Samuel","orcid":"https://orcid.org/0000-0002-7981-8504"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Sheeba Samuel","raw_affiliation_strings":["Heinz-Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University, Jena, Germany","Michael Stifel Center Jena, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Heinz-Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Michael Stifel Center Jena, Jena, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024963110","display_name":"Birgitta K\u00f6nig\u2010Ries","orcid":"https://orcid.org/0000-0002-2382-9722"},"institutions":[{"id":"https://openalex.org/I76198965","display_name":"Friedrich Schiller University Jena","ror":"https://ror.org/05qpz1x62","country_code":"DE","type":"education","lineage":["https://openalex.org/I76198965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Birgitta K\u00f6nig-Ries","raw_affiliation_strings":["Heinz-Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University, Jena, Germany","Michael Stifel Center Jena, Jena, Germany"],"affiliations":[{"raw_affiliation_string":"Heinz-Nixdorf Chair for Distributed Information Systems, Friedrich Schiller University, Jena, Germany","institution_ids":["https://openalex.org/I76198965"]},{"raw_affiliation_string":"Michael Stifel Center Jena, Jena, Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5029559772"],"corresponding_institution_ids":["https://openalex.org/I76198965"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1044,"currency":"EUR","value_usd":1125},"fwci":10.6849,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.97573488,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"13","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9391999840736389,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8214731812477112},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.6470900774002075},{"id":"https://openalex.org/keywords/reproducibility","display_name":"Reproducibility","score":0.5697968006134033},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4864489734172821},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.46873530745506287},{"id":"https://openalex.org/keywords/provenance","display_name":"Provenance","score":0.41796964406967163},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3245786428451538},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.10823190212249756}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8214731812477112},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.6470900774002075},{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.5697968006134033},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4864489734172821},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.46873530745506287},{"id":"https://openalex.org/C2780049196","wikidata":"https://www.wikidata.org/wiki/Q23582628","display_name":"Provenance","level":2,"score":0.41796964406967163},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3245786428451538},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.10823190212249756},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C5900021","wikidata":"https://www.wikidata.org/wiki/Q163082","display_name":"Petrology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13326-021-00253-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-021-00253-1","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-021-00253-1","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:4c7ce52053a44b249533f58bb7c3e17f","is_oa":true,"landing_page_url":"https://doaj.org/article/4c7ce52053a44b249533f58bb7c3e17f","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 13, Iss 1, Pp 1-17 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8734275","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8734275","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-021-00253-1","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-021-00253-1","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-021-00253-1","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12"}],"awards":[{"id":"https://openalex.org/G3204223981","display_name":null,"funder_award_id":"258780946","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G3781048034","display_name":null,"funder_award_id":"TRR 166","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G5106512922","display_name":null,"funder_award_id":"Deutsche Forschungsgemeinschaft (DFG","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6024419964","display_name":null,"funder_award_id":"Deutsche Forschungsgemeinschaft (DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6052429835","display_name":null,"funder_award_id":"(DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G762232396","display_name":null,"funder_award_id":"Project","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8330397625","display_name":null,"funder_award_id":"Funding","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G8928656450","display_name":null,"funder_award_id":"Projekt DEAL","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320324900","display_name":"Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn","ror":"https://ror.org/041nas322"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4206657655.pdf","grobid_xml":"https://content.openalex.org/works/W4206657655.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W560576065","https://openalex.org/W1535032090","https://openalex.org/W1654805921","https://openalex.org/W1665997306","https://openalex.org/W1772546531","https://openalex.org/W1825120118","https://openalex.org/W1974694769","https://openalex.org/W1974752004","https://openalex.org/W2042037135","https://openalex.org/W2050285579","https://openalex.org/W2050355460","https://openalex.org/W2050554833","https://openalex.org/W2094379143","https://openalex.org/W2102802363","https://openalex.org/W2124917259","https://openalex.org/W2128226234","https://openalex.org/W2129666400","https://openalex.org/W2130430745","https://openalex.org/W2136482257","https://openalex.org/W2144593768","https://openalex.org/W2149378423","https://openalex.org/W2164516301","https://openalex.org/W2166378641","https://openalex.org/W2168103533","https://openalex.org/W2171475421","https://openalex.org/W2293230601","https://openalex.org/W2299775049","https://openalex.org/W2302501749","https://openalex.org/W2406493898","https://openalex.org/W2512030163","https://openalex.org/W2539403003","https://openalex.org/W2572857085","https://openalex.org/W2573798673","https://openalex.org/W2610944875","https://openalex.org/W2641905542","https://openalex.org/W2766945679","https://openalex.org/W2767526804","https://openalex.org/W2787225861","https://openalex.org/W2886419521","https://openalex.org/W2899478536","https://openalex.org/W2951325952","https://openalex.org/W3154754686","https://openalex.org/W3157373137","https://openalex.org/W4239696231","https://openalex.org/W4252427272","https://openalex.org/W4300497458","https://openalex.org/W4376543136","https://openalex.org/W6735926645"],"related_works":["https://openalex.org/W2413717610","https://openalex.org/W1973270181","https://openalex.org/W2417696084","https://openalex.org/W2368782778","https://openalex.org/W2087830269","https://openalex.org/W3106281778","https://openalex.org/W2354627941","https://openalex.org/W4324138256","https://openalex.org/W3134060498","https://openalex.org/W2003643616"],"abstract_inverted_index":{"Abstract":[0],"Background":[1],"The":[2,135,185],"advancement":[3],"of":[4,40,53,68,77,87,90,93,124,141,144,170,197,201,222,227,242],"science":[5],"and":[6,25,44,58,101,107,117,151,156,161,168,173,183,203,206,212,229,235,254],"technologies":[7],"play":[8],"an":[9,69,104,214],"immense":[10],"role":[11],"in":[12,80,131,245],"the":[13,36,51,61,66,113,121,132,142,165,171,194,219],"way":[14,216],"scientific":[15,94,125,145,198,224,243],"experiments":[16,22,95,126,199,244],"are":[17,23,28,176],"being":[18],"conducted.":[19],"Understanding":[20],"how":[21,26,174],"performed":[24],"results":[27,54,78,102],"derived":[29],"has":[30],"become":[31],"significantly":[32],"more":[33],"complex":[34],"with":[35,153],"recent":[37],"explosive":[38],"growth":[39],"heterogeneous":[41],"research":[42,62],"data":[43,115,150,155,205],"methods.":[45],"Therefore,":[46],"it":[47],"is":[48,55,84,187],"important":[49,166],"that":[50,96],"provenance":[52,92,123,143],"tracked,":[56],"described,":[57],"managed":[59],"throughout":[60],"lifecycle":[63],"starting":[64],"from":[65,103],"beginning":[67],"experiment":[70,225],"to":[71,74,119,158,178,217,239],"its":[72],"end":[73],"ensure":[75],"reproducibility":[76],"described":[79],"publications.":[81],"However,":[82],"there":[83],"a":[85,223,240],"lack":[86],"interoperable":[88,215],"representation":[89],"end-to-end":[91,122],"interlinks":[97],"data,":[98],"processing":[99],"steps,":[100],"experiment\u2019s":[105],"computational":[106,154,202,228,250],"non-computational":[108,149,204,230],"processes.":[109],"Results":[110],"We":[111,163,209,232],"present":[112],"\u201cREPRODUCE-ME\u201d":[114],"model":[116],"ontology":[118,136,172,186],"describe":[120],"by":[127,147,189],"extending":[128],"existing":[129,179],"standards":[130],"semantic":[133],"web.":[134],"brings":[137],"together":[138],"different":[139,246],"aspects":[140],"studies":[146],"interlinking":[148],"steps":[152,157],"achieve":[159],"understandability":[160],"reproducibility.":[162],"explain":[164],"classes":[167],"properties":[169],"they":[175],"mapped":[177],"ontologies":[180],"like":[181,249],"PROV-O":[182],"P-Plan.":[184],"evaluated":[188,236],"answering":[190],"competency":[191],"questions":[192],"over":[193],"knowledge":[195],"base":[196],"consisting":[200,226],"steps.":[207,231],"Conclusion":[208],"have":[210,233],"designed":[211],"developed":[213],"represent":[218],"complete":[220],"path":[221],"applied":[234],"our":[237],"approach":[238],"set":[241],"subject":[247],"domains":[248],"science,":[251],"biological":[252],"imaging,":[253],"microscopy.":[255]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
