{"id":"https://openalex.org/W4206629979","doi":"https://doi.org/10.1186/s13326-021-00251-3","title":"An annotated dataset for extracting gene-melanoma relations from scientific literature","display_name":"An annotated dataset for extracting gene-melanoma relations from scientific literature","publication_year":2022,"publication_date":"2022-01-19","ids":{"openalex":"https://openalex.org/W4206629979","doi":"https://doi.org/10.1186/s13326-021-00251-3","pmid":"https://pubmed.ncbi.nlm.nih.gov/35045882"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-021-00251-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-021-00251-3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-021-00251-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-021-00251-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044199881","display_name":"Roberto Zanoli","orcid":"https://orcid.org/0000-0003-0870-0872"},"institutions":[{"id":"https://openalex.org/I2277624104","display_name":"Fondazione Bruno Kessler","ror":"https://ror.org/01j33xk10","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2277624104"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Roberto Zanoli","raw_affiliation_strings":["Fondazione Bruno Kessler (FBK), Via Sommarive 18, Povo (TN), 38123, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fondazione Bruno Kessler (FBK), Via Sommarive 18, Povo (TN), 38123, Italy","institution_ids":["https://openalex.org/I2277624104"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073069826","display_name":"Alberto Lavelli","orcid":"https://orcid.org/0000-0002-7175-6804"},"institutions":[{"id":"https://openalex.org/I2277624104","display_name":"Fondazione Bruno Kessler","ror":"https://ror.org/01j33xk10","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2277624104"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alberto Lavelli","raw_affiliation_strings":["Fondazione Bruno Kessler (FBK), Via Sommarive 18, Povo (TN), 38123, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fondazione Bruno Kessler (FBK), Via Sommarive 18, Povo (TN), 38123, Italy","institution_ids":["https://openalex.org/I2277624104"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020900594","display_name":"Theresa L\u00f6ffler","orcid":null},"institutions":[{"id":"https://openalex.org/I2801112126","display_name":"University Hospital of Bern","ror":"https://ror.org/01q9sj412","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I2801112126"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Theresa L\u00f6ffler","raw_affiliation_strings":["Department of Neurology, Inselspital, Freiburgstrasse 16, Bern, 3010, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurology, Inselspital, Freiburgstrasse 16, Bern, 3010, Switzerland","institution_ids":["https://openalex.org/I2801112126"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028400883","display_name":"Nicolas Andres Perez Gonzalez","orcid":null},"institutions":[{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Nicolas Andres Perez Gonzalez","raw_affiliation_strings":["Department of Quantitative Biomedicine, University of Z\u00fcrich, Winterthurerstrasse 190, Z\u00fcrich, 8057, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Quantitative Biomedicine, University of Z\u00fcrich, Winterthurerstrasse 190, Z\u00fcrich, 8057, Switzerland","institution_ids":["https://openalex.org/I202697423"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025307528","display_name":"Fabio Rinaldi","orcid":"https://orcid.org/0000-0001-5718-5462"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I15196421","display_name":"University of Applied Sciences and Arts of Southern Switzerland","ror":"https://ror.org/05ep8g269","country_code":"CH","type":"education","lineage":["https://openalex.org/I15196421"]},{"id":"https://openalex.org/I200744771","display_name":"ZHAW Zurich University of Applied Sciences","ror":null,"country_code":"CH","type":null,"lineage":["https://openalex.org/I200744771"]},{"id":"https://openalex.org/I202697423","display_name":"University of Zurich","ror":"https://ror.org/02crff812","country_code":"CH","type":"education","lineage":["https://openalex.org/I202697423"]},{"id":"https://openalex.org/I2277624104","display_name":"Fondazione Bruno Kessler","ror":"https://ror.org/01j33xk10","country_code":"IT","type":"facility","lineage":["https://openalex.org/I2277624104"]},{"id":"https://openalex.org/I2614128279","display_name":"Dalle Molle Institute for Artificial Intelligence Research","ror":"https://ror.org/013355g38","country_code":"CH","type":"facility","lineage":["https://openalex.org/I15196421","https://openalex.org/I2614128279","https://openalex.org/I57201433"]}],"countries":["CH","IT"],"is_corresponding":true,"raw_author_name":"Fabio Rinaldi","raw_affiliation_strings":["Dalle Molle Institute for Artificial Intelligence (IDSIA USI/SUPSI) Campus Est, Via la Santa 1, Lugano, 6962, Switzerland. fabio.rinaldi@idsia.ch","Department of Quantitative Biomedicine, University of Z\u00fcrich, Winterthurerstrasse 190, Z\u00fcrich, 8057, Switzerland. fabio.rinaldi@idsia.ch","Fondazione Bruno Kessler (FBK), Via Sommarive 18, Povo (TN), 38123, Italy. fabio.rinaldi@idsia.ch","Swiss Institute of Bioinformatics (SIB), Lausanne, 1015, Switzerland. fabio.rinaldi@idsia.ch","Dalle Molle Institute for Artificial Intelligence (IDSIA USI/SUPSI) Campus Est, Via la Santa 1, Lugano, 6962, Switzerland","Swiss Institute of Bioinformatics (SIB), Lausanne, 1015, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalle Molle Institute for Artificial Intelligence (IDSIA USI/SUPSI) Campus Est, Via la Santa 1, Lugano, 6962, Switzerland. fabio.rinaldi@idsia.ch","institution_ids":["https://openalex.org/I2614128279"]},{"raw_affiliation_string":"Department of Quantitative Biomedicine, University of Z\u00fcrich, Winterthurerstrasse 190, Z\u00fcrich, 8057, Switzerland. fabio.rinaldi@idsia.ch","institution_ids":["https://openalex.org/I200744771","https://openalex.org/I202697423"]},{"raw_affiliation_string":"Fondazione Bruno Kessler (FBK), Via Sommarive 18, Povo (TN), 38123, Italy. fabio.rinaldi@idsia.ch","institution_ids":["https://openalex.org/I2277624104"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics (SIB), Lausanne, 1015, Switzerland. fabio.rinaldi@idsia.ch","institution_ids":["https://openalex.org/I12708293"]},{"raw_affiliation_string":"Dalle Molle Institute for Artificial Intelligence (IDSIA USI/SUPSI) Campus Est, Via la Santa 1, Lugano, 6962, Switzerland","institution_ids":["https://openalex.org/I15196421","https://openalex.org/I2614128279"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics (SIB), Lausanne, 1015, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5025307528"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I15196421","https://openalex.org/I200744771","https://openalex.org/I202697423","https://openalex.org/I2277624104","https://openalex.org/I2614128279"],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":1340,"currency":"USD","value_usd":1340},"fwci":0.235,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.45132479,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"13","issue":"1","first_page":"2","last_page":"2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.977400004863739,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.977400004863739,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.007300000172108412,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.0012000000569969416,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.748828649520874},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7175179719924927},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.5889366865158081},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5719669461250305},{"id":"https://openalex.org/keywords/melanoma","display_name":"Melanoma","score":0.5633814930915833},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5484085083007812},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5036470293998718},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.448896199464798},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4040876030921936},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.38769620656967163},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.22311311960220337},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1226155161857605}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.748828649520874},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7175179719924927},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.5889366865158081},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5719669461250305},{"id":"https://openalex.org/C2777658100","wikidata":"https://www.wikidata.org/wiki/Q180614","display_name":"Melanoma","level":2,"score":0.5633814930915833},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5484085083007812},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5036470293998718},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.448896199464798},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4040876030921936},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.38769620656967163},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.22311311960220337},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1226155161857605},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D008545","descriptor_name":"Melanoma","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011642","descriptor_name":"Publications","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s13326-021-00251-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-021-00251-3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-021-00251-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:35045882","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35045882","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:doaj.org/article:40bbe1a33ed94169808847a8afa35e88","is_oa":true,"landing_page_url":"https://doaj.org/article/40bbe1a33ed94169808847a8afa35e88","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 13, Iss 1, Pp 1-14 (2022)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8772125","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8772125","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-021-00251-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-021-00251-3","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-021-00251-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5799999833106995,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G6169222452","display_name":null,"funder_award_id":"CR30I1_162758","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4206629979.pdf","grobid_xml":"https://content.openalex.org/works/W4206629979.grobid-xml"},"referenced_works_count":24,"referenced_works":["https://openalex.org/W1498990157","https://openalex.org/W1981325530","https://openalex.org/W2027821912","https://openalex.org/W2046343550","https://openalex.org/W2107580398","https://openalex.org/W2133943399","https://openalex.org/W2137518425","https://openalex.org/W2138627627","https://openalex.org/W2283138324","https://openalex.org/W2329409386","https://openalex.org/W2598789561","https://openalex.org/W2604372572","https://openalex.org/W2809349863","https://openalex.org/W2883380892","https://openalex.org/W2895715183","https://openalex.org/W2898795086","https://openalex.org/W2906406865","https://openalex.org/W2911448018","https://openalex.org/W2911489562","https://openalex.org/W2951560185","https://openalex.org/W2963341956","https://openalex.org/W2987875462","https://openalex.org/W2997204042","https://openalex.org/W4237381349"],"related_works":["https://openalex.org/W842810586","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W4236762297","https://openalex.org/W2444550338","https://openalex.org/W2169232658","https://openalex.org/W2369351710","https://openalex.org/W2594363579"],"abstract_inverted_index":{"BACKGROUND:":[0],"Melanoma":[1,99],"is":[2,34,56],"one":[3],"of":[4,11,20,42,54,64,80,88,97,107,119,171,194,225,232,280,303,312],"the":[5,9,18,29,38,62,78,95,98,144,155,169,172,189,221,226,233,255,272,278,281,301,317,322],"least":[6],"common":[7],"but":[8],"deadliest":[10],"skin":[12],"cancers.":[13],"This":[14,286],"cancer":[15],"begins":[16],"when":[17],"genes":[19,30,108,173],"a":[21,103,179,183,249,289,305,309],"cell":[22],"suffer":[23],"damage":[24],"or":[25],"fail,":[26],"and":[27,58,124,148,161,185,204,267,326,331],"identifying":[28],"involved":[31,109],"in":[32,110,128,174,188,244,252,275,344],"melanoma":[33,39,46,125,186,268],"crucial":[35],"for":[36,67,90,307],"understanding":[37],"tumorigenesis.":[40],"Thousands":[41],"publications":[43],"about":[44],"human":[45,111],"appear":[47],"every":[48],"year.":[49],"However,":[50],"while":[51],"biological":[52],"curation":[53],"data":[55],"costly":[57],"time-consuming,":[59],"to":[60,113,176,215,236,254,324],"date":[61],"application":[63],"machine":[65,202],"learning":[66],"gene-melanoma":[68,218,292,314],"relation":[69,180],"extraction":[70],"from":[71,220,316],"text":[72,146],"has":[73],"been":[74],"severely":[75],"limited":[76],"by":[77,136,263],"lack":[79,87],"annotated":[81,117,135,158,293],"resources.":[82],"RESULTS:":[83],"To":[84,241],"overcome":[85],"this":[86,195],"resources":[89],"melanoma,":[91],"we":[92,247],"have":[93],"exploited":[94],"information":[96,170],"Gene":[100],"Database":[101],"(MGDB,":[102],"manually":[104],"curated":[105],"database":[106],"melanoma)":[112],"automatically":[114,134,216,264],"build":[115],"an":[116],"dataset":[118,196],"binary":[120],"relations":[121,153,219,238],"between":[122,182,239],"gene":[123,184,266,282],"entities":[126,132,156,235],"occurring":[127],"PubMed":[129],"abstracts.":[130],"The":[131,152,163,192,210,258],"were":[133,157,212],"state-of-the-art":[137],"text-mining":[138],"tools.":[139],"Their":[140],"annotation":[141,165,251,260],"includes":[142],"both":[143,200],"mention":[145],"spans":[147],"normalized":[149],"concept":[150,187],"identifiers.":[151],"among":[154],"at":[159],"concept-":[160],"mention-level.":[162],"concept-level":[164,256],"was":[166,197,261],"produced":[167],"using":[168],"MGDB":[175,276],"decide":[177],"if":[178],"holds":[181],"whole":[190],"abstract.":[191],"exploitability":[193],"tested":[198],"with":[199,283,338],"traditional":[201],"learning,":[203],"neural":[205],"network-based":[206],"models":[207,211,228],"like":[208],"BERT.":[209],"then":[213],"used":[214],"extract":[217],"biomedical":[222],"literature.":[223,318],"Most":[224],"current":[227],"use":[229,321],"context-aware":[230],"representations":[231],"target":[234],"establish":[237,277],"them.":[240],"facilitate":[242,347],"researchers":[243],"their":[245,328],"experiments":[246,298],"generated":[248,262],"mention-level":[250,259],"support":[253],"annotation.":[257],"linking":[265],"mentions":[269],"co-occurring":[270],"within":[271],"sentences":[273],"that":[274],"association":[279],"melanoma.":[284],"CONCLUSIONS:":[285],"paper":[287],"presents":[288],"corpus":[290,306,323],"containing":[291],"relations.":[294],"Additionally,":[295],"it":[296],"discusses":[297],"which":[299,334,343],"show":[300],"usefulness":[302],"such":[304],"training":[308],"system":[310],"capable":[311],"mining":[313],"relationships":[315],"Researchers":[319],"can":[320],"develop":[325],"compare":[327],"own":[329],"models,":[330],"produce":[332],"results":[333],"might":[335,346],"be":[336],"integrated":[337],"existing":[339],"structured":[340],"knowledge":[341],"databases,":[342],"turn":[345],"medical":[348],"research.":[349]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
