{"id":"https://openalex.org/W3153362321","doi":"https://doi.org/10.1186/s13326-021-00241-5","title":"Improved characterisation of clinical text through ontology-based vocabulary expansion","display_name":"Improved characterisation of clinical text through ontology-based vocabulary expansion","publication_year":2021,"publication_date":"2021-04-12","ids":{"openalex":"https://openalex.org/W3153362321","doi":"https://doi.org/10.1186/s13326-021-00241-5","mag":"3153362321","pmid":"https://pubmed.ncbi.nlm.nih.gov/33845909"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-021-00241-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-021-00241-5","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-021-00241-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-021-00241-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064709498","display_name":"Luke T. Slater","orcid":"https://orcid.org/0000-0001-9227-0670"},"institutions":[{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Luke T. Slater","raw_affiliation_strings":["Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK. l.slater.1@bham.ac.uk","University Hospitals Birmingham NHS Foundation Trust, University of Birmingham, Birmingham, B15 2TT, UK. l.slater.1@bham.ac.uk","Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK. l.slater.1@bham.ac.uk","institution_ids":[]},{"raw_affiliation_string":"University Hospitals Birmingham NHS Foundation Trust, University of Birmingham, Birmingham, B15 2TT, UK. l.slater.1@bham.ac.uk","institution_ids":[]},{"raw_affiliation_string":"Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK","institution_ids":["https://openalex.org/I79619799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028525901","display_name":"William Bradlow","orcid":"https://orcid.org/0000-0001-9766-5321"},"institutions":[{"id":"https://openalex.org/I1308923049","display_name":"University Hospitals Birmingham NHS Foundation Trust","ror":"https://ror.org/014ja3n03","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1308923049"]},{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"William Bradlow","raw_affiliation_strings":["Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK","University Hospitals Birmingham NHS Foundation Trust, University of Birmingham, Birmingham, B15 2TT, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK","institution_ids":["https://openalex.org/I79619799"]},{"raw_affiliation_string":"University Hospitals Birmingham NHS Foundation Trust, University of Birmingham, Birmingham, B15 2TT, UK","institution_ids":["https://openalex.org/I1308923049","https://openalex.org/I79619799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042238057","display_name":"Simon Ball","orcid":"https://orcid.org/0000-0001-7410-5268"},"institutions":[{"id":"https://openalex.org/I1308923049","display_name":"University Hospitals Birmingham NHS Foundation Trust","ror":"https://ror.org/014ja3n03","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1308923049"]},{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon Ball","raw_affiliation_strings":["Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK","University Hospitals Birmingham NHS Foundation Trust, University of Birmingham, Birmingham, B15 2TT, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK","institution_ids":["https://openalex.org/I79619799"]},{"raw_affiliation_string":"University Hospitals Birmingham NHS Foundation Trust, University of Birmingham, Birmingham, B15 2TT, UK","institution_ids":["https://openalex.org/I1308923049","https://openalex.org/I79619799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043808311","display_name":"Robert Hoehndorf","orcid":"https://orcid.org/0000-0001-8149-5890"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Robert Hoehndorf","raw_affiliation_strings":["Computational Bioscience Research Centre, KAUST, Thuwal, Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Centre, KAUST, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089900113","display_name":"Georgios V. Gkoutos","orcid":"https://orcid.org/0000-0002-2061-091X"},"institutions":[{"id":"https://openalex.org/I1308923049","display_name":"University Hospitals Birmingham NHS Foundation Trust","ror":"https://ror.org/014ja3n03","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1308923049"]},{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]},{"id":"https://openalex.org/I4210142469","display_name":"Health Data Research UK","ror":"https://ror.org/04rtjaj74","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210142469"]},{"id":"https://openalex.org/I4210162943","display_name":"NIHR Birmingham Biomedical Research Centre","ror":"https://ror.org/05ccjmp23","country_code":"GB","type":"facility","lineage":["https://openalex.org/I34931013","https://openalex.org/I4210162943"]},{"id":"https://openalex.org/I4210136696","display_name":"NIHR Surgical Reconstruction and Microbiology Research Centre","ror":"https://ror.org/042sjcz88","country_code":"GB","type":"facility","lineage":["https://openalex.org/I34931013","https://openalex.org/I4210136696"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Georgios V Gkoutos","raw_affiliation_strings":["Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK","MRC Health Data Research (HDR), Birmingham, UK","NIHR Biomedical Research Centre, University of Birmingham, Birmingham, B15 2TT, UK","NIHR Experimental Cancer Medicine Centre, University of Birmingham, Birmingham, B15 2TT, UK","NIHR Surgical Reconstruction and Microbiology Research Centre, University of Birmingham, Birmingham, B15 2TT, UK","University Hospitals Birmingham NHS Foundation Trust, University of Birmingham, Birmingham, B15 2TT, UK"],"affiliations":[{"raw_affiliation_string":"Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK","institution_ids":["https://openalex.org/I79619799"]},{"raw_affiliation_string":"MRC Health Data Research (HDR), Birmingham, UK","institution_ids":["https://openalex.org/I4210142469"]},{"raw_affiliation_string":"NIHR Biomedical Research Centre, University of Birmingham, Birmingham, B15 2TT, UK","institution_ids":["https://openalex.org/I4210162943"]},{"raw_affiliation_string":"NIHR Experimental Cancer Medicine Centre, University of Birmingham, Birmingham, B15 2TT, UK","institution_ids":["https://openalex.org/I4210136696","https://openalex.org/I4210162943"]},{"raw_affiliation_string":"NIHR Surgical Reconstruction and Microbiology Research Centre, University of Birmingham, Birmingham, B15 2TT, UK","institution_ids":["https://openalex.org/I4210136696","https://openalex.org/I79619799"]},{"raw_affiliation_string":"University Hospitals Birmingham NHS Foundation Trust, University of Birmingham, Birmingham, B15 2TT, UK","institution_ids":["https://openalex.org/I1308923049","https://openalex.org/I79619799"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5064709498"],"corresponding_institution_ids":["https://openalex.org/I79619799"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.8927,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.72391067,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"12","issue":"1","first_page":"7","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8383775949478149},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7882555723190308},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.696526050567627},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.6823616623878479},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6293210983276367},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.6109130382537842},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5223618745803833},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.5012731552124023},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.49458882212638855},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.43992310762405396},{"id":"https://openalex.org/keywords/ontology-components","display_name":"Ontology components","score":0.43669265508651733},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.422936350107193},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4002637267112732},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.3931988775730133},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3608441948890686},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.32024163007736206},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.1797589361667633}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8383775949478149},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7882555723190308},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.696526050567627},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.6823616623878479},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6293210983276367},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.6109130382537842},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5223618745803833},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.5012731552124023},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.49458882212638855},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.43992310762405396},{"id":"https://openalex.org/C154210476","wikidata":"https://www.wikidata.org/wiki/Q7095057","display_name":"Ontology components","level":5,"score":0.43669265508651733},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.422936350107193},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4002637267112732},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.3931988775730133},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3608441948890686},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.32024163007736206},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.1797589361667633},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014825","descriptor_name":"Vocabulary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014825","descriptor_name":"Vocabulary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014825","descriptor_name":"Vocabulary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014825","descriptor_name":"Vocabulary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s13326-021-00241-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-021-00241-5","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-021-00241-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:33845909","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33845909","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:doaj.org/article:1b27032b3ff7472798d9cf608a0be112","is_oa":true,"landing_page_url":"https://doaj.org/article/1b27032b3ff7472798d9cf608a0be112","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 12, Iss 1, Pp 1-9 (2021)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:8042947","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8042947","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/04eb8415-6445-4a0a-80e0-a8043c0894c3","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/04eb8415-6445-4a0a-80e0-a8043c0894c3","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Slater, L T, Bradlow, W, Ball, S, Hoehndorf, R & Gkoutos, G V 2021, 'Improved characterisation of clinical text through ontology-based vocabulary expansion', Journal of Biomedical Semantics, vol. 12, no. 1, 7. https://doi.org/10.1186/s13326-021-00241-5","raw_type":"article"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/664429","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/664429","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/s13326-021-00241-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-021-00241-5","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-021-00241-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2344873991","display_name":null,"funder_award_id":"URF/1/3790-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G4458585192","display_name":null,"funder_award_id":"OpenRiskNet 731075","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G6036059206","display_name":null,"funder_award_id":"731032","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G6409611488","display_name":null,"funder_award_id":"SRMRC","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"},{"id":"https://openalex.org/G7212143077","display_name":null,"funder_award_id":"HDRUK/CFC/01","funder_id":"https://openalex.org/F4320314731","funder_display_name":"UK Research and Innovation"},{"id":"https://openalex.org/G7230862021","display_name":null,"funder_award_id":"731075","funder_id":"https://openalex.org/F4320332999","funder_display_name":"Horizon 2020 Framework Programme"},{"id":"https://openalex.org/G7414939125","display_name":null,"funder_award_id":"HDRUK/CFC/01","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G8585535233","display_name":null,"funder_award_id":"HDRUK/CFC/01","funder_id":"https://openalex.org/F4320319990","funder_display_name":"National Institute for Health and Care Research"}],"funders":[{"id":"https://openalex.org/F4320314731","display_name":"UK Research and Innovation","ror":"https://ror.org/001aqnf71"},{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320319994","display_name":"Department of Health and Social Care","ror":"https://ror.org/03sbpja79"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320328041","display_name":"Surgical Reconstruction and Microbiology Research Centre","ror":null},{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320333939","display_name":"Imperial Experimental Cancer Medicine Centre","ror":null},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320336705","display_name":"Birmingham Biomedical Research Centre","ror":"https://ror.org/05ccjmp23"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3153362321.pdf","grobid_xml":"https://content.openalex.org/works/W3153362321.grobid-xml"},"referenced_works_count":45,"referenced_works":["https://openalex.org/W49074955","https://openalex.org/W161474860","https://openalex.org/W1606238867","https://openalex.org/W1965091013","https://openalex.org/W1969713547","https://openalex.org/W1969761972","https://openalex.org/W1974896839","https://openalex.org/W1987492677","https://openalex.org/W2031185328","https://openalex.org/W2054359158","https://openalex.org/W2058490165","https://openalex.org/W2087779040","https://openalex.org/W2103017472","https://openalex.org/W2113142309","https://openalex.org/W2117805756","https://openalex.org/W2119613819","https://openalex.org/W2123442489","https://openalex.org/W2128049108","https://openalex.org/W2139315672","https://openalex.org/W2144949988","https://openalex.org/W2146495783","https://openalex.org/W2152410429","https://openalex.org/W2158191506","https://openalex.org/W2159092541","https://openalex.org/W2164290176","https://openalex.org/W2170282111","https://openalex.org/W2178376734","https://openalex.org/W2252448679","https://openalex.org/W2394812591","https://openalex.org/W2396881363","https://openalex.org/W2405033759","https://openalex.org/W2407342754","https://openalex.org/W2517579954","https://openalex.org/W2557385283","https://openalex.org/W2558643140","https://openalex.org/W2763028672","https://openalex.org/W2767470330","https://openalex.org/W2791587029","https://openalex.org/W2901332105","https://openalex.org/W3022102674","https://openalex.org/W3099272318","https://openalex.org/W3122371403","https://openalex.org/W3174294808","https://openalex.org/W4212919921","https://openalex.org/W4400177176"],"related_works":["https://openalex.org/W1801798365","https://openalex.org/W2064177607","https://openalex.org/W2157272674","https://openalex.org/W4206428734","https://openalex.org/W49074955","https://openalex.org/W1489291989","https://openalex.org/W2068800403","https://openalex.org/W1525432201","https://openalex.org/W2732632690","https://openalex.org/W2102229151"],"abstract_inverted_index":{"Inter-ontology":[0],"synonym":[1],"expansion":[2],"can":[3,54,62],"lead":[4],"to":[5,32,57],"a":[6,33,66],"vast":[7],"increase":[8],"in":[9,42],"the":[10,20,23,52],"scale":[11],"of":[12,22,38],"vocabulary":[13,25],"available":[14],"for":[15],"text":[16,41],"mining":[17],"applications.":[18],"While":[19],"accuracy":[21],"extended":[24],"is":[26,49],"not":[27,50],"perfect,":[28],"it":[29],"nevertheless":[30],"led":[31],"significantly":[34],"improved":[35],"ontology-based":[36],"characterisation":[37],"patients":[39],"from":[40],"one":[43],"setting.":[44],"Furthermore,":[45],"where":[46],"run-on":[47],"error":[48],"acceptable,":[51],"technique":[53],"be":[55,63],"used":[56],"provide":[58],"candidate":[59],"synonyms":[60],"which":[61],"checked":[64],"by":[65],"domain":[67],"expert.":[68]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2021,"cited_by_count":4}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
