{"id":"https://openalex.org/W3103842844","doi":"https://doi.org/10.1186/s13326-020-00231-z","title":"Natural language processing algorithms for mapping clinical text fragments onto ontology concepts: a systematic review and recommendations for future studies","display_name":"Natural language processing algorithms for mapping clinical text fragments onto ontology concepts: a systematic review and recommendations for future studies","publication_year":2020,"publication_date":"2020-11-16","ids":{"openalex":"https://openalex.org/W3103842844","doi":"https://doi.org/10.1186/s13326-020-00231-z","mag":"3103842844","pmid":"https://pubmed.ncbi.nlm.nih.gov/33198814"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-020-00231-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-020-00231-z","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-020-00231-z","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"review","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-020-00231-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067103208","display_name":"Martijn G. Kersloot","orcid":"https://orcid.org/0000-0003-3357-3027"},"institutions":[{"id":"https://openalex.org/I4210148356","display_name":"GGD Amsterdam","ror":"https://ror.org/04gbbq803","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210088893","https://openalex.org/I4210148356"]},{"id":"https://openalex.org/I4210151833","display_name":"Amsterdam University Medical Centers","ror":"https://ror.org/05grdyy37","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Martijn G. Kersloot","raw_affiliation_strings":["Amsterdam UMC, University of Amsterdam, Department of Medical Informatics, Amsterdam Public Health Research Institute Castor EDC, Room J1B-109, PO Box 22700, 1100 DE, Amsterdam, The Netherlands. m.g.kersloot@amsterdamumc.nl","Castor EDC, Amsterdam, The Netherlands. m.g.kersloot@amsterdamumc.nl","Amsterdam UMC, University of Amsterdam, Department of Medical Informatics, Amsterdam Public Health Research Institute Castor EDC, Room J1B-109, PO Box 22700, 1100 DE, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Amsterdam UMC, University of Amsterdam, Department of Medical Informatics, Amsterdam Public Health Research Institute Castor EDC, Room J1B-109, PO Box 22700, 1100 DE, Amsterdam, The Netherlands. m.g.kersloot@amsterdamumc.nl","institution_ids":["https://openalex.org/I4210151833"]},{"raw_affiliation_string":"Castor EDC, Amsterdam, The Netherlands. m.g.kersloot@amsterdamumc.nl","institution_ids":["https://openalex.org/I4210148356"]},{"raw_affiliation_string":"Amsterdam UMC, University of Amsterdam, Department of Medical Informatics, Amsterdam Public Health Research Institute Castor EDC, Room J1B-109, PO Box 22700, 1100 DE, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364","https://openalex.org/I4210151833"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090323999","display_name":"Florentien J. P. van Putten","orcid":null},"institutions":[{"id":"https://openalex.org/I4210151833","display_name":"Amsterdam University Medical Centers","ror":"https://ror.org/05grdyy37","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Florentien J. P. van Putten","raw_affiliation_strings":["Amsterdam UMC, University of Amsterdam, Department of Medical Informatics, Amsterdam Public Health Research Institute Castor EDC, Room J1B-109, PO Box 22700, 1100 DE, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Amsterdam UMC, University of Amsterdam, Department of Medical Informatics, Amsterdam Public Health Research Institute Castor EDC, Room J1B-109, PO Box 22700, 1100 DE, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364","https://openalex.org/I4210151833"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075388940","display_name":"Ameen Abu\u2010Hanna","orcid":"https://orcid.org/0000-0003-4324-7954"},"institutions":[{"id":"https://openalex.org/I4210151833","display_name":"Amsterdam University Medical Centers","ror":"https://ror.org/05grdyy37","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ameen Abu-Hanna","raw_affiliation_strings":["Amsterdam UMC, University of Amsterdam, Department of Medical Informatics, Amsterdam Public Health Research Institute Castor EDC, Room J1B-109, PO Box 22700, 1100 DE, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Amsterdam UMC, University of Amsterdam, Department of Medical Informatics, Amsterdam Public Health Research Institute Castor EDC, Room J1B-109, PO Box 22700, 1100 DE, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364","https://openalex.org/I4210151833"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017129044","display_name":"Ronald Cornet","orcid":"https://orcid.org/0000-0002-1704-5980"},"institutions":[{"id":"https://openalex.org/I4210151833","display_name":"Amsterdam University Medical Centers","ror":"https://ror.org/05grdyy37","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ronald Cornet","raw_affiliation_strings":["Amsterdam UMC, University of Amsterdam, Department of Medical Informatics, Amsterdam Public Health Research Institute Castor EDC, Room J1B-109, PO Box 22700, 1100 DE, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Amsterdam UMC, University of Amsterdam, Department of Medical Informatics, Amsterdam Public Health Research Institute Castor EDC, Room J1B-109, PO Box 22700, 1100 DE, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364","https://openalex.org/I4210151833"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002196485","display_name":"Derk L. Arts","orcid":"https://orcid.org/0000-0001-5702-5856"},"institutions":[{"id":"https://openalex.org/I4210151833","display_name":"Amsterdam University Medical Centers","ror":"https://ror.org/05grdyy37","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Derk L. Arts","raw_affiliation_strings":["Amsterdam UMC, University of Amsterdam, Department of Medical Informatics, Amsterdam Public Health Research Institute Castor EDC, Room J1B-109, PO Box 22700, 1100 DE, Amsterdam, The Netherlands","Castor EDC, Amsterdam, The Netherlands"],"affiliations":[{"raw_affiliation_string":"Amsterdam UMC, University of Amsterdam, Department of Medical Informatics, Amsterdam Public Health Research Institute Castor EDC, Room J1B-109, PO Box 22700, 1100 DE, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I887064364","https://openalex.org/I4210151833"]},{"raw_affiliation_string":"Castor EDC, Amsterdam, The Netherlands","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5067103208"],"corresponding_institution_ids":["https://openalex.org/I4210148356","https://openalex.org/I4210151833","https://openalex.org/I887064364"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":3.1765,"has_fulltext":true,"cited_by_count":78,"citation_normalized_percentile":{"value":0.93019979,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"11","issue":"1","first_page":"14","last_page":"14"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10350","display_name":"Electronic Health Records Systems","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/3605","display_name":"Health Information Management"},"field":{"id":"https://openalex.org/fields/36","display_name":"Health Professions"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9829000234603882,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8152468800544739},{"id":"https://openalex.org/keywords/generalizability-theory","display_name":"Generalizability theory","score":0.6906067132949829},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.6608671545982361},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5973319411277771},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.59015953540802},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5738887786865234},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5556076169013977},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.4254457950592041},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.34716007113456726},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.337003231048584}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8152468800544739},{"id":"https://openalex.org/C27158222","wikidata":"https://www.wikidata.org/wiki/Q5532422","display_name":"Generalizability theory","level":2,"score":0.6906067132949829},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.6608671545982361},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5973319411277771},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.59015953540802},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5738887786865234},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5556076169013977},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.4254457950592041},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.34716007113456726},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.337003231048584},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":6,"locations":[{"id":"doi:10.1186/s13326-020-00231-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-020-00231-z","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-020-00231-z","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:33198814","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33198814","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pure.amsterdamumc.nl:openaire/c3632986-8038-44b5-9034-fcc1b3dd85bb","is_oa":true,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/c3632986-8038-44b5-9034-fcc1b3dd85bb","pdf_url":"https://pure.amsterdamumc.nl/ws/files/140597498/Natural-language-processing-algorithms-for-mapping-clinical-text-fragments-onto-ontology-concepts-a-systematic-review-a.pdf","source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kersloot, M G, van Putten, F J P, Abu-Hanna, A, Cornet, R & Arts, D L 2020, 'Natural language processing algorithms for mapping clinical text fragments onto ontology concepts: a systematic review and recommendations for future studies', Journal of Biomedical Semantics, vol. 11, no. 1, 14. https://doi.org/10.1186/s13326-020-00231-z","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:amcpub:oai:pure.amc.nl:publications/202f3810-87e5-4d9b-aa07-046bae6d62d1","is_oa":true,"landing_page_url":"https://pure.amc.nl/en/publications/natural-language-processing-algorithms-for-mapping-clinical-text-fragments-onto-ontology-concepts-a-systematic-review-and-recommendations-for-future-studies(202f3810-87e5-4d9b-aa07-046bae6d62d1).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, 11(1):14. BioMed Central Ltd.","raw_type":"info:eu-repo/semantics/other"},{"id":"pmh:oai:doaj.org/article:8b446d7123d24b06a3a8e25247bae43b","is_oa":true,"landing_page_url":"https://doaj.org/article/8b446d7123d24b06a3a8e25247bae43b","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 11, Iss 1, Pp 1-21 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7670625","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7670625","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-020-00231-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-020-00231-z","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-020-00231-z","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5600000023841858,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G1307198771","display_name":null,"funder_award_id":"KVW-00163","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G2631452109","display_name":null,"funder_award_id":"(ERDF)","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3103842844.pdf","grobid_xml":"https://content.openalex.org/works/W3103842844.grobid-xml"},"referenced_works_count":115,"referenced_works":["https://openalex.org/W3718207","https://openalex.org/W45588658","https://openalex.org/W107465174","https://openalex.org/W127431808","https://openalex.org/W1501578663","https://openalex.org/W1510122727","https://openalex.org/W1527557040","https://openalex.org/W1541954861","https://openalex.org/W1581800546","https://openalex.org/W1830758076","https://openalex.org/W1980941942","https://openalex.org/W1982243179","https://openalex.org/W1985417340","https://openalex.org/W1985875906","https://openalex.org/W1994682257","https://openalex.org/W1997927489","https://openalex.org/W2005677940","https://openalex.org/W2006940889","https://openalex.org/W2014176958","https://openalex.org/W2031167046","https://openalex.org/W2034511967","https://openalex.org/W2042484288","https://openalex.org/W2044757964","https://openalex.org/W2059796825","https://openalex.org/W2082258771","https://openalex.org/W2089666417","https://openalex.org/W2091834108","https://openalex.org/W2100895148","https://openalex.org/W2104381725","https://openalex.org/W2106671991","https://openalex.org/W2107556918","https://openalex.org/W2119093140","https://openalex.org/W2119207919","https://openalex.org/W2120411377","https://openalex.org/W2123556395","https://openalex.org/W2126166543","https://openalex.org/W2132392159","https://openalex.org/W2137079713","https://openalex.org/W2146089916","https://openalex.org/W2146958003","https://openalex.org/W2155377979","https://openalex.org/W2156098321","https://openalex.org/W2159721973","https://openalex.org/W2163278718","https://openalex.org/W2163738899","https://openalex.org/W2166861608","https://openalex.org/W2170505850","https://openalex.org/W2173884055","https://openalex.org/W2208437477","https://openalex.org/W2283041611","https://openalex.org/W2326291605","https://openalex.org/W2337688041","https://openalex.org/W2347086563","https://openalex.org/W2350106363","https://openalex.org/W2370408513","https://openalex.org/W2397665446","https://openalex.org/W2416643236","https://openalex.org/W2482205476","https://openalex.org/W2487119530","https://openalex.org/W2512023191","https://openalex.org/W2522273064","https://openalex.org/W2527811215","https://openalex.org/W2558756233","https://openalex.org/W2560438049","https://openalex.org/W2563177329","https://openalex.org/W2582146834","https://openalex.org/W2599076725","https://openalex.org/W2732226154","https://openalex.org/W2735580341","https://openalex.org/W2746316842","https://openalex.org/W2749701213","https://openalex.org/W2760618582","https://openalex.org/W2769851464","https://openalex.org/W2770044072","https://openalex.org/W2772068375","https://openalex.org/W2778088240","https://openalex.org/W2787243831","https://openalex.org/W2788252665","https://openalex.org/W2789321258","https://openalex.org/W2789326915","https://openalex.org/W2888190576","https://openalex.org/W2890827016","https://openalex.org/W2891469329","https://openalex.org/W2894910307","https://openalex.org/W2899766488","https://openalex.org/W2901332105","https://openalex.org/W2902140812","https://openalex.org/W2902516827","https://openalex.org/W2903534409","https://openalex.org/W2906053813","https://openalex.org/W2911254434","https://openalex.org/W2912213068","https://openalex.org/W2915963147","https://openalex.org/W2924460896","https://openalex.org/W2933294645","https://openalex.org/W2941078097","https://openalex.org/W2941736751","https://openalex.org/W2946871011","https://openalex.org/W2951146425","https://openalex.org/W2966565743","https://openalex.org/W2968062059","https://openalex.org/W2972483465","https://openalex.org/W2973398987","https://openalex.org/W2979744929","https://openalex.org/W2982027034","https://openalex.org/W2982102213","https://openalex.org/W2982522183","https://openalex.org/W2984295533","https://openalex.org/W2985173696","https://openalex.org/W2989638179","https://openalex.org/W2991792334","https://openalex.org/W3020992444","https://openalex.org/W4241231557","https://openalex.org/W4292229870","https://openalex.org/W4294215472"],"related_works":["https://openalex.org/W2118717649","https://openalex.org/W2413243053","https://openalex.org/W410723623","https://openalex.org/W2015341305","https://openalex.org/W2035068594","https://openalex.org/W4225593417","https://openalex.org/W2914601452","https://openalex.org/W2401244299","https://openalex.org/W1822792362","https://openalex.org/W1507779355"],"abstract_inverted_index":{"We":[0,54],"found":[1],"many":[2],"heterogeneous":[3],"approaches":[4],"to":[5,20],"the":[6,9,26,39,66],"reporting":[7,62],"on":[8],"development":[10],"and":[11,47,68,73],"evaluation":[12],"of":[13,25,38,70],"NLP":[14,74],"algorithms":[15,75],"that":[16,56],"map":[17],"clinical":[18],"text":[19],"ontology":[21],"concepts.":[22],"Over":[23],"one-fourth":[24,37],"identified":[27],"publications":[28],"did":[29,42,49],"not":[30,43,50],"perform":[31,44,51],"an":[32,60],"evaluation.":[33],"In":[34],"addition,":[35],"over":[36],"included":[40],"studies":[41,72],"a":[45],"validation,":[46],"88%":[48],"external":[52],"validation.":[53],"believe":[55],"our":[57],"recommendations,":[58],"alongside":[59],"existing":[61],"standard,":[63],"will":[64],"increase":[65],"reproducibility":[67],"reusability":[69],"future":[71],"in":[76],"medicine.":[77]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":24},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":12}],"updated_date":"2026-04-11T08:14:18.477133","created_date":"2025-10-10T00:00:00"}
