{"id":"https://openalex.org/W3113708991","doi":"https://doi.org/10.1186/s13326-020-00230-0","title":"Ontological representation, classification and data-driven computing of phenotypes","display_name":"Ontological representation, classification and data-driven computing of phenotypes","publication_year":2020,"publication_date":"2020-12-01","ids":{"openalex":"https://openalex.org/W3113708991","doi":"https://doi.org/10.1186/s13326-020-00230-0","mag":"3113708991","pmid":"https://pubmed.ncbi.nlm.nih.gov/33349245"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-020-00230-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-020-00230-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13326-020-00230-0.pdf","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s13326-020-00230-0.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058571630","display_name":"Alexandr Uciteli","orcid":"https://orcid.org/0000-0001-9558-5352"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Alexandr Uciteli","raw_affiliation_strings":["Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig, Leipzig, Germany. auciteli@imise.uni-leipzig.de","SMITH Consortium of the German Medical Informatics Initiative, Leipzig, Germany. auciteli@imise.uni-leipzig.de","Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig, Leipzig, Germany"],"raw_orcid":"https://orcid.org/0000-0001-9558-5352","affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig, Leipzig, Germany. auciteli@imise.uni-leipzig.de","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"SMITH Consortium of the German Medical Informatics Initiative, Leipzig, Germany. auciteli@imise.uni-leipzig.de","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016125618","display_name":"Christoph Beger","orcid":"https://orcid.org/0000-0002-1166-0368"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christoph Beger","raw_affiliation_strings":["Growth Network CrescNet, University of Leipzig, Leipzig, Germany","Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Growth Network CrescNet, University of Leipzig, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018641933","display_name":"Toralf Kirsten","orcid":"https://orcid.org/0000-0001-7117-4268"},"institutions":[{"id":"https://openalex.org/I116397343","display_name":"Hochschule Mittweida","ror":"https://ror.org/024ga3r86","country_code":"DE","type":"education","lineage":["https://openalex.org/I116397343"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Toralf Kirsten","raw_affiliation_strings":["Faculty of Applied Computer and Biological Sciences, University of Applied Sciences Mittweida, Mittweida, Germany","LIFE Research Centre for Civilization Diseases, University of Leipzig, Leipzig, Germany","SMITH Consortium of the German Medical Informatics Initiative, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Applied Computer and Biological Sciences, University of Applied Sciences Mittweida, Mittweida, Germany","institution_ids":["https://openalex.org/I116397343"]},{"raw_affiliation_string":"LIFE Research Centre for Civilization Diseases, University of Leipzig, Leipzig, Germany","institution_ids":[]},{"raw_affiliation_string":"SMITH Consortium of the German Medical Informatics Initiative, Leipzig, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042672161","display_name":"Frank Meineke","orcid":null},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Frank A. Meineke","raw_affiliation_strings":["Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig, Leipzig, Germany","SMITH Consortium of the German Medical Informatics Initiative, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"SMITH Consortium of the German Medical Informatics Initiative, Leipzig, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020087024","display_name":"Heinrich Herre","orcid":"https://orcid.org/0000-0001-5343-9218"},"institutions":[{"id":"https://openalex.org/I926574661","display_name":"Leipzig University","ror":"https://ror.org/03s7gtk40","country_code":"DE","type":"education","lineage":["https://openalex.org/I926574661"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Heinrich Herre","raw_affiliation_strings":["Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig, Leipzig, Germany. heinrich.herre@imise.uni-leipzig.de","SMITH Consortium of the German Medical Informatics Initiative, Leipzig, Germany. heinrich.herre@imise.uni-leipzig.de","Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig, Leipzig, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig, Leipzig, Germany. heinrich.herre@imise.uni-leipzig.de","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"SMITH Consortium of the German Medical Informatics Initiative, Leipzig, Germany. heinrich.herre@imise.uni-leipzig.de","institution_ids":["https://openalex.org/I926574661"]},{"raw_affiliation_string":"Institute for Medical Informatics, Statistics and Epidemiology (IMISE), University of Leipzig, Leipzig, Germany","institution_ids":["https://openalex.org/I926574661"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5020087024","https://openalex.org/A5058571630"],"corresponding_institution_ids":["https://openalex.org/I926574661"],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":983,"currency":"EUR","value_usd":1060},"fwci":0.671,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.66849709,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"11","issue":"1","first_page":"15","last_page":"15"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5134000182151794,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5134000182151794,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.058800000697374344,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14393","display_name":"Health, Environment, Cognitive Aging","score":0.043800000101327896,"subfield":{"id":"https://openalex.org/subfields/2307","display_name":"Health, Toxicology and Mutagenesis"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8170152902603149},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7092280387878418},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.613926887512207},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5094640851020813},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.492156445980072},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4553665220737457},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4271024465560913},{"id":"https://openalex.org/keywords/health-informatics","display_name":"Health informatics","score":0.41479629278182983},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35147929191589355},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.32222849130630493},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.16974028944969177}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8170152902603149},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7092280387878418},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.613926887512207},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5094640851020813},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.492156445980072},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4553665220737457},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4271024465560913},{"id":"https://openalex.org/C145642194","wikidata":"https://www.wikidata.org/wiki/Q870895","display_name":"Health informatics","level":3,"score":0.41479629278182983},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35147929191589355},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.32222849130630493},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.16974028944969177},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D008490","descriptor_name":"Medical Informatics","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016347","descriptor_name":"Medical Records Systems, Computerized","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016347","descriptor_name":"Medical Records Systems, Computerized","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D016347","descriptor_name":"Medical Records Systems, Computerized","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s13326-020-00230-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-020-00230-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13326-020-00230-0.pdf","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:33349245","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33349245","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:doaj.org/article:2457fae7d581469881714781f8261ae0","is_oa":true,"landing_page_url":"https://doaj.org/article/2457fae7d581469881714781f8261ae0","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 11, Iss 1, Pp 1-17 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7751121","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7751121","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:qucosa:de:qucosa:78046","is_oa":true,"landing_page_url":"https://ul.qucosa.de/id/qucosa%3A78046","pdf_url":null,"source":{"id":"https://openalex.org/S4377196435","display_name":"Qucosa (Saxon State and University Library Dresden)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I3132420320","host_organization_name":"SLUB Dresden","host_organization_lineage":["https://openalex.org/I3132420320"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/s13326-020-00230-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-020-00230-0","pdf_url":"https://link.springer.com/content/pdf/10.1186/s13326-020-00230-0.pdf","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G6205985247","display_name":null,"funder_award_id":"01ZZ1803A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320325298","display_name":"Universit\u00e4t Leipzig","ror":"https://ror.org/03s7gtk40"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3113708991.pdf","grobid_xml":"https://content.openalex.org/works/W3113708991.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W102398446","https://openalex.org/W1588434295","https://openalex.org/W1863753810","https://openalex.org/W1898928487","https://openalex.org/W1923002222","https://openalex.org/W1964255443","https://openalex.org/W2025349319","https://openalex.org/W2048024098","https://openalex.org/W2087352256","https://openalex.org/W2088014878","https://openalex.org/W2135140530","https://openalex.org/W2136741161","https://openalex.org/W2146495783","https://openalex.org/W2162361752","https://openalex.org/W2163670493","https://openalex.org/W2164205487","https://openalex.org/W2166215401","https://openalex.org/W2169841668","https://openalex.org/W2461108715","https://openalex.org/W2519041430","https://openalex.org/W2557385283","https://openalex.org/W2752417653","https://openalex.org/W2883986511","https://openalex.org/W2885638337","https://openalex.org/W2888640032","https://openalex.org/W2894794416","https://openalex.org/W2902328511","https://openalex.org/W2940627813","https://openalex.org/W2963338341","https://openalex.org/W2975683264","https://openalex.org/W6629723602","https://openalex.org/W6641265236"],"related_works":["https://openalex.org/W2397677514","https://openalex.org/W2914293784","https://openalex.org/W2407382301","https://openalex.org/W1495820741","https://openalex.org/W4323056170","https://openalex.org/W2126732312","https://openalex.org/W2401910071","https://openalex.org/W2189429352","https://openalex.org/W4302329558","https://openalex.org/W1971571384"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,31,98,249],"successful":[2],"determination":[3],"and":[4,21,28,58,88,95,119,121,130,151,179,195,211,226,271,322,328],"analysis":[5],"of":[6,18,24,33,125,136,164,208,290,296],"phenotypes":[7,66,87,228,262,289],"plays":[8],"a":[9,42,82,137,144,176,188,205,219,283],"key":[10],"role":[11],"in":[12,310],"the":[13,16,22,50,65,115,134,212,254,294,316],"diagnostic":[14,317],"process,":[15,318],"evaluation":[17],"risk":[19,320],"factors":[20],"recruitment":[23],"participants":[25,325],"for":[26,128,173,314,326],"clinical":[27,93,311,327],"epidemiological":[29,329],"studies.":[30,330],"development":[32],"computable":[34],"phenotype":[35,149,165,189,298],"algorithms":[36,166],"to":[37,85,103,111,146,184,193,223,287],"solve":[38],"these":[39],"tasks":[40,243],"is":[41,101,159,191],"challenging":[43],"problem,":[44],"caused":[45],"by":[46],"various":[47],"reasons.":[48],"Firstly,":[49],"term":[51],"'phenotype'":[52],"has":[53],"no":[54],"generally":[55],"agreed":[56],"definition":[57],"its":[59,180],"meaning":[60],"depends":[61],"on":[62,154,276,301],"context.":[63],"Secondly,":[64],"are":[67,81],"most":[68],"commonly":[69],"specified":[70],"as":[71,251,253],"non-computable":[72],"descriptive":[73],"documents.":[74],"Recent":[75],"attempts":[76],"have":[77,183],"shown":[78],"that":[79,89,172],"ontologies":[80],"suitable":[83],"way":[84],"handle":[86],"they":[90],"can":[91,307],"support":[92],"research":[94,129],"decision":[96],"making.":[97],"SMITH":[99],"Consortium":[100],"dedicated":[102],"rapidly":[104],"establish":[105],"an":[106,236],"integrative":[107],"medical":[108,278],"informatics":[109],"framework":[110],"provide":[112],"physicians":[113],"with":[114,244,260,293],"best":[116],"available":[117,231,277,302],"data":[118,127],"knowledge":[120],"enable":[122],"innovative":[123],"use":[124,139],"healthcare":[126],"treatment":[131],"optimisation.":[132],"In":[133,200],"context":[135],"methodological":[138],"case":[140],"'phenotype":[141],"pipeline'":[142],"(PheP),":[143],"technology":[145],"automatically":[147],"generate":[148],"classifications":[150],"annotations":[152],"based":[153,275,300],"electronic":[155],"health":[156],"records":[157],"(EHR)":[158],"developed.":[160],"A":[161],"large":[162],"series":[163],"will":[167],"be":[168,185,308],"implemented.":[169],"This":[170,304],"implies":[171],"each":[174],"algorithm":[175],"classification":[177,242,274],"scheme":[178],"input":[181],"variables":[182],"defined.":[186],"Furthermore,":[187],"engine":[190],"required":[192],"evaluate":[194],"execute":[196],"developed":[197,282],"algorithms.":[198],"RESULTS:":[199],"this":[201],"article,":[202],"we":[203],"present":[204],"Core":[206],"Ontology":[207],"Phenotypes":[209],"(COP)":[210],"software":[213],"Phenotype":[214],"Manager":[215],"(PhenoMan),":[216],"which":[217],"implements":[218],"novel":[220,284],"ontology-based":[221,285],"method":[222,256,286],"model,":[224],"classify":[225],"compute":[227],"from":[229],"already":[230],"data.":[232,279,303],"Our":[233],"solution":[234],"includes":[235],"enhanced":[237],"iterative":[238],"reasoning":[239,255,299],"process":[240],"combining":[241],"mathematical":[245],"calculations":[246],"at":[247],"runtime.":[248],"ontology":[250],"well":[252],"were":[257],"successfully":[258],"evaluated":[259],"selected":[261],"including":[263],"SOFA":[264],"score,":[265],"socio-economic":[266],"status,":[267],"body":[268],"surface":[269],"area":[270],"WHO":[272],"BMI":[273],"CONCLUSIONS:":[280],"We":[281],"model":[288],"living":[291],"beings":[292],"aim":[295],"automated":[297],"new":[305],"approach":[306],"used":[309],"context,":[312],"e.g.,":[313],"supporting":[315],"evaluating":[319],"factors,":[321],"recruiting":[323],"appropriate":[324]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
