{"id":"https://openalex.org/W2999954485","doi":"https://doi.org/10.1186/s13326-019-0218-0","title":"Combining lexical and context features for automatic ontology extension","display_name":"Combining lexical and context features for automatic ontology extension","publication_year":2020,"publication_date":"2020-01-13","ids":{"openalex":"https://openalex.org/W2999954485","doi":"https://doi.org/10.1186/s13326-019-0218-0","mag":"2999954485","pmid":"https://pubmed.ncbi.nlm.nih.gov/31931870"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-019-0218-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0218-0","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0218-0","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0218-0","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070294716","display_name":"Sara Althubaiti","orcid":"https://orcid.org/0000-0001-5754-8569"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Sara Althubaiti","raw_affiliation_strings":["Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia","Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069397549","display_name":"\u015eenay Kafkas","orcid":"https://orcid.org/0000-0001-7509-5786"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"\u015eenay Kafkas","raw_affiliation_strings":["Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia","Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063729142","display_name":"Marwa Abdelhakim","orcid":"https://orcid.org/0000-0001-6816-2119"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Marwa Abdelhakim","raw_affiliation_strings":["Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia","Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043808311","display_name":"Robert Hoehndorf","orcid":"https://orcid.org/0000-0001-8149-5890"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Robert Hoehndorf","raw_affiliation_strings":["Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia. robert.hoehndorf@kaust.edu.sa","Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia. robert.hoehndorf@kaust.edu.sa","Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia. robert.hoehndorf@kaust.edu.sa","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia. robert.hoehndorf@kaust.edu.sa","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, 23955-6900, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5043808311"],"corresponding_institution_ids":["https://openalex.org/I71920554"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":1.2199,"has_fulltext":true,"cited_by_count":28,"citation_normalized_percentile":{"value":0.77867663,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"11","issue":"1","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9550999999046326,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9550999999046326,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.0203000009059906,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.004800000227987766,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8556045293807983},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8103466033935547},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.6161085367202759},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.58614581823349},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.58409184217453},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.575480580329895},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.5456954836845398},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.5388602018356323},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.5049884915351868},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5012662410736084},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4865814447402954},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4850575029850006},{"id":"https://openalex.org/keywords/ontology-components","display_name":"Ontology components","score":0.47407761216163635},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.4461393356323242},{"id":"https://openalex.org/keywords/ontology-learning","display_name":"Ontology learning","score":0.4307931363582611},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4226089119911194},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.41725921630859375},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.41126835346221924},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.23514199256896973}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8556045293807983},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8103466033935547},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.6161085367202759},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.58614581823349},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.58409184217453},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.575480580329895},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.5456954836845398},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.5388602018356323},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.5049884915351868},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5012662410736084},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4865814447402954},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4850575029850006},{"id":"https://openalex.org/C154210476","wikidata":"https://www.wikidata.org/wiki/Q7095057","display_name":"Ontology components","level":5,"score":0.47407761216163635},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.4461393356323242},{"id":"https://openalex.org/C2777002027","wikidata":"https://www.wikidata.org/wiki/Q3620938","display_name":"Ontology learning","level":5,"score":0.4307931363582611},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4226089119911194},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.41725921630859375},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.41126835346221924},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.23514199256896973},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004194","descriptor_name":"Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009415","descriptor_name":"Nerve Net","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009415","descriptor_name":"Nerve Net","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009415","descriptor_name":"Nerve Net","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s13326-019-0218-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0218-0","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0218-0","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:31931870","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31931870","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:doaj.org/article:86ffe4d87f1b4e5da0ef4e51eaa00826","is_oa":true,"landing_page_url":"https://doaj.org/article/86ffe4d87f1b4e5da0ef4e51eaa00826","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 11, Iss 1, Pp 1-13 (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6958746","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6958746","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/661080","is_oa":true,"landing_page_url":"http://hdl.handle.net/10754/661080","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/s13326-019-0218-0","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0218-0","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0218-0","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1786638435","display_name":null,"funder_award_id":"FCC/1/1976-08-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G198788104","display_name":null,"funder_award_id":"URF/1/3454-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G8067857331","display_name":null,"funder_award_id":"FCS/1/3657-02-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2999954485.pdf","grobid_xml":"https://content.openalex.org/works/W2999954485.grobid-xml"},"referenced_works_count":72,"referenced_works":["https://openalex.org/W18286363","https://openalex.org/W183866246","https://openalex.org/W233856140","https://openalex.org/W237958955","https://openalex.org/W242716519","https://openalex.org/W1606942977","https://openalex.org/W1966796134","https://openalex.org/W1974896839","https://openalex.org/W1979225493","https://openalex.org/W1981276685","https://openalex.org/W1984068295","https://openalex.org/W1985871253","https://openalex.org/W1991747722","https://openalex.org/W1993692165","https://openalex.org/W2011953981","https://openalex.org/W2012230538","https://openalex.org/W2013115997","https://openalex.org/W2017966273","https://openalex.org/W2019076248","https://openalex.org/W2027847170","https://openalex.org/W2029054018","https://openalex.org/W2033237963","https://openalex.org/W2033637395","https://openalex.org/W2040870580","https://openalex.org/W2051881028","https://openalex.org/W2053039860","https://openalex.org/W2053673723","https://openalex.org/W2054199699","https://openalex.org/W2058755371","https://openalex.org/W2072649147","https://openalex.org/W2076331605","https://openalex.org/W2083919396","https://openalex.org/W2087842341","https://openalex.org/W2103017472","https://openalex.org/W2104785260","https://openalex.org/W2113142309","https://openalex.org/W2119412782","https://openalex.org/W2121754036","https://openalex.org/W2124436241","https://openalex.org/W2130420078","https://openalex.org/W2130460164","https://openalex.org/W2137829089","https://openalex.org/W2139315672","https://openalex.org/W2140599435","https://openalex.org/W2142016317","https://openalex.org/W2142741334","https://openalex.org/W2147018385","https://openalex.org/W2156909104","https://openalex.org/W2159092541","https://openalex.org/W2159941448","https://openalex.org/W2162912209","https://openalex.org/W2169099542","https://openalex.org/W2182133327","https://openalex.org/W2187089797","https://openalex.org/W2196595859","https://openalex.org/W2239231358","https://openalex.org/W2244718251","https://openalex.org/W2412088331","https://openalex.org/W2489897443","https://openalex.org/W2569241005","https://openalex.org/W2604272474","https://openalex.org/W2747364278","https://openalex.org/W2802855384","https://openalex.org/W2899915536","https://openalex.org/W2900549448","https://openalex.org/W2904322551","https://openalex.org/W2950133940","https://openalex.org/W2953167769","https://openalex.org/W2974429973","https://openalex.org/W3140207494","https://openalex.org/W4285719527","https://openalex.org/W7009094188"],"related_works":["https://openalex.org/W2732632690","https://openalex.org/W4206428734","https://openalex.org/W2102229151","https://openalex.org/W2012420033","https://openalex.org/W2365397974","https://openalex.org/W1794266373","https://openalex.org/W147727067","https://openalex.org/W2138664789","https://openalex.org/W2150106658","https://openalex.org/W2002382892"],"abstract_inverted_index":{"BACKGROUND:":[0],"Ontologies":[1],"are":[2,61,82,173,216],"widely":[3],"used":[4,62,200],"across":[5],"biology":[6],"and":[7,21,52,58,77,110,120,148,179,205,213],"biomedicine":[8],"for":[9,201],"the":[10,90,131,144,202],"annotation":[11],"of":[12,28,79,92,133,154,161,190,208],"databases.":[13],"Ontology":[14,147],"development":[15,40],"is":[16,159],"often":[17],"a":[18,46,80,93,167,184,188],"manual,":[19],"time-consuming,":[20],"expensive":[22],"process.":[23],"Automatic":[24],"or":[25],"semi-automatic":[26,203],"identification":[27],"classes":[29],"that":[30,48,60,139,164],"can":[31,37,181,197],"be":[32,187,199],"added":[33],"to":[34,55,63,65,88,106,117,141,149,166],"an":[35,66,123,170,177],"ontology":[36,39,67,171,193],"make":[38],"more":[41],"efficient.":[42],"RESULTS:":[43],"We":[44,129],"developed":[45],"method":[47,158],"uses":[49],"machine":[50,86],"learning":[51,87],"word":[53,104],"embeddings":[54,105],"identify":[56,89,99,182],"words":[57],"phrases":[59],"refer":[64,140,165],"class":[68,81,168,185],"in":[69,136,143,169,176],"biomedical":[70],"Europe":[71],"PMC":[72],"full-text":[73],"articles.":[74],"Once":[75],"labels":[76,163],"synonyms":[78],"known,":[83],"we":[84,98,121],"use":[85,103,122],"super-classes":[91],"class.":[94],"For":[95],"this":[96],"purpose,":[97],"lexical":[100],"term":[101],"variants,":[102],"capture":[107],"context":[108],"information,":[109],"rely":[111],"on":[112],"automated":[113],"reasoning":[114],"over":[115],"ontologies":[116],"generate":[118],"features,":[119],"artificial":[124],"neural":[125],"network":[126],"as":[127],"classifier.":[128],"demonstrate":[130],"utility":[132],"our":[134],"approach":[135,196],"identifying":[137],"terms":[138],"diseases":[142],"Human":[145],"Disease":[146],"distinguish":[150],"between":[151],"different":[152],"types":[153],"diseases.":[155],"CONCLUSIONS:":[156],"Our":[157,195],"capable":[160],"discovering":[162],"but":[172],"not":[174],"present":[175],"ontology,":[178],"it":[180],"whether":[183],"should":[186],"subclass":[189],"some":[191],"high-level":[192],"classes.":[194],"therefore":[198],"extension":[204],"quality":[206],"control":[207],"ontologies.":[209],"The":[210],"algorithm,":[211],"corpora":[212],"evaluation":[214],"datasets":[215],"available":[217],"at":[218],"https://github.com/bio-ontology-research-group/ontology-extension.":[219]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2019,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
