{"id":"https://openalex.org/W2986758246","doi":"https://doi.org/10.1186/s13326-019-0212-6","title":"Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes","display_name":"Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes","publication_year":2019,"publication_date":"2019-11-01","ids":{"openalex":"https://openalex.org/W2986758246","doi":"https://doi.org/10.1186/s13326-019-0212-6","mag":"2986758246","pmid":"https://pubmed.ncbi.nlm.nih.gov/31711540"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-019-0212-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0212-6","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0212-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0212-6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082633575","display_name":"Mercedes Arguello-Casteleiro","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Mercedes Arguello-Casteleiro","raw_affiliation_strings":["School of Computer Science, University of Manchester, Manchester, UK. m.arguello@manchester.ac.uk","School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK. m.arguello@manchester.ac.uk","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049799218","display_name":"Robert Stevens","orcid":"https://orcid.org/0000-0002-6038-9025"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robert Stevens","raw_affiliation_strings":["School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090600124","display_name":"Julio Des-Diz","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Julio Des-Diz","raw_affiliation_strings":["Hospital do Saln\u00e9s, Villagarc\u00eda de Arousa, Pontevedra, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hospital do Saln\u00e9s, Villagarc\u00eda de Arousa, Pontevedra, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070431163","display_name":"Chris Wroe","orcid":"https://orcid.org/0000-0002-6538-8187"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chris Wroe","raw_affiliation_strings":["BMJ, Tavistock Square, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BMJ, Tavistock Square, London, UK","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043735926","display_name":"M.J. Fernandez-Prieto","orcid":null},"institutions":[{"id":"https://openalex.org/I54459138","display_name":"University of Salford","ror":"https://ror.org/01tmqtf75","country_code":"GB","type":"education","lineage":["https://openalex.org/I54459138"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Maria Jesus Fernandez-Prieto","raw_affiliation_strings":["Salford Languages, University of Salford, Salford, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Salford Languages, University of Salford, Salford, UK","institution_ids":["https://openalex.org/I54459138"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090333121","display_name":"Nava Maroto","orcid":"https://orcid.org/0000-0002-0349-7716"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Nava Maroto","raw_affiliation_strings":["Departamento de Ling\u00fc\u00edstica Aplicada a la Ciencia y a la Tecnolog\u00eda, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departamento de Ling\u00fc\u00edstica Aplicada a la Ciencia y a la Tecnolog\u00eda, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074727122","display_name":"Diego Maseda-Fernandez","orcid":null},"institutions":[{"id":"https://openalex.org/I196539022","display_name":"Mid Cheshire Hospitals NHS Foundation Trust","ror":"https://ror.org/02kr3gj55","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I196539022"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I4400009038","display_name":"NHS England","ror":"https://ror.org/00xm3h672","country_code":null,"type":"funder","lineage":["https://openalex.org/I4400009038"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Diego Maseda-Fernandez","raw_affiliation_strings":["Midcheshire Hospital Foundation Trust, NHS England, Crewe, UK","School of Medical Sciences, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Midcheshire Hospital Foundation Trust, NHS England, Crewe, UK","institution_ids":["https://openalex.org/I196539022","https://openalex.org/I4400009038"]},{"raw_affiliation_string":"School of Medical Sciences, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047947755","display_name":"George Demetriou","orcid":"https://orcid.org/0000-0002-1766-1652"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"George Demetriou","raw_affiliation_strings":["School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048545517","display_name":"Simon Peters","orcid":"https://orcid.org/0000-0002-7317-9182"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Simon Peters","raw_affiliation_strings":["School of Social Sciences, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Social Sciences, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011927604","display_name":"Peter\u2010John M. Noble","orcid":"https://orcid.org/0000-0002-2275-2014"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Peter-John M. Noble","raw_affiliation_strings":["Small Animal Veterinary Surveillance Network, University of Liverpool, Liverpool, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Small Animal Veterinary Surveillance Network, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103729723","display_name":"Phil Jones","orcid":null},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Phil H. Jones","raw_affiliation_strings":["Small Animal Veterinary Surveillance Network, University of Liverpool, Liverpool, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Small Animal Veterinary Surveillance Network, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080704687","display_name":"Joanna Dukes\u2010McEwan","orcid":"https://orcid.org/0000-0002-0326-8251"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jo Dukes-McEwan","raw_affiliation_strings":["Small Animal Teaching Hospital, University of Liverpool, Liverpool, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Small Animal Teaching Hospital, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032109404","display_name":"Alan Radford","orcid":"https://orcid.org/0000-0002-4590-1334"},"institutions":[{"id":"https://openalex.org/I146655781","display_name":"University of Liverpool","ror":"https://ror.org/04xs57h96","country_code":"GB","type":"education","lineage":["https://openalex.org/I146655781"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alan D. Radford","raw_affiliation_strings":["Small Animal Veterinary Surveillance Network, University of Liverpool, Liverpool, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Small Animal Veterinary Surveillance Network, University of Liverpool, Liverpool, UK","institution_ids":["https://openalex.org/I146655781"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105350782","display_name":"John Keane","orcid":"https://orcid.org/0000-0001-9022-4339"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John Keane","raw_affiliation_strings":["Manchester Institute of Biotechnology, University of Manchester, Manchester, UK","School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Manchester Institute of Biotechnology, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005912060","display_name":"Goran Nenadi\u0107","orcid":"https://orcid.org/0000-0003-0795-5363"},"institutions":[{"id":"https://openalex.org/I2799725268","display_name":"Manchester Academic Health Science Centre","ror":"https://ror.org/04rrkhs81","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I2799725268"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Goran Nenadic","raw_affiliation_strings":["Health eResearch Centre, University of Manchester, Manchester, UK","Manchester Institute of Biotechnology, University of Manchester, Manchester, UK","School of Computer Science, University of Manchester, Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health eResearch Centre, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I2799725268","https://openalex.org/I28407311"]},{"raw_affiliation_string":"Manchester Institute of Biotechnology, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"School of Computer Science, University of Manchester, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5082633575"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.5981,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.67658436,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"10","issue":"S1","first_page":"22","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9036999940872192,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9036999940872192,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.020899999886751175,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.012799999676644802,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7319213151931763},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6308255195617676},{"id":"https://openalex.org/keywords/bespoke","display_name":"Bespoke","score":0.6165012121200562},{"id":"https://openalex.org/keywords/unified-medical-language-system","display_name":"Unified Medical Language System","score":0.5397274494171143},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5340470671653748},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.47517886757850647},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4258001446723938},{"id":"https://openalex.org/keywords/meaning","display_name":"Meaning (existential)","score":0.4163845479488373},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.41353797912597656}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7319213151931763},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6308255195617676},{"id":"https://openalex.org/C44210515","wikidata":"https://www.wikidata.org/wiki/Q16968978","display_name":"Bespoke","level":2,"score":0.6165012121200562},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.5397274494171143},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5340470671653748},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.47517886757850647},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4258001446723938},{"id":"https://openalex.org/C2780876879","wikidata":"https://www.wikidata.org/wiki/Q3054749","display_name":"Meaning (existential)","level":2,"score":0.4163845479488373},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.41353797912597656},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000074823","descriptor_name":"One Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000074823","descriptor_name":"One Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000074823","descriptor_name":"One Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000074823","descriptor_name":"One Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000074823","descriptor_name":"One Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000074823","descriptor_name":"One Health","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078202","descriptor_name":"Systematic Reviews as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078202","descriptor_name":"Systematic Reviews as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078202","descriptor_name":"Systematic Reviews as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078202","descriptor_name":"Systematic Reviews as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078202","descriptor_name":"Systematic Reviews as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078202","descriptor_name":"Systematic Reviews as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018634","descriptor_name":"Veterinarians","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018634","descriptor_name":"Veterinarians","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018634","descriptor_name":"Veterinarians","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018634","descriptor_name":"Veterinarians","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018634","descriptor_name":"Veterinarians","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018634","descriptor_name":"Veterinarians","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D039781","descriptor_name":"PubMed","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051188","descriptor_name":"Knowledge Bases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s13326-019-0212-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0212-6","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0212-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:31711540","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31711540","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire/92f3a07c-61e9-41b7-86e1-c46f3a19366e","is_oa":true,"landing_page_url":"https://research.manchester.ac.uk/en/publications/92f3a07c-61e9-41b7-86e1-c46f3a19366e","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Arguello Casteleiro, M, Stevens, R, Des-Diz, J, Wroe, C, Fernandez-Prieto, M J, Maroto, N, Maseda Fernandez, D, Demetriou, G, Peters, S, Noble, P-J M, Jones, P H, Dukes-McEwan, J, Radford, A D, Keane, J & Nenadic, G 2019, 'Exploring semantic deep learning for building reliable and reusable one health knowledge from PubMed systematic reviews and veterinary clinical notes', Journal of Biomedical Semantics, vol. 10, no. 22. https://doi.org/10.1186/s13326-019-0212-6","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:oa.upm.es:85863","is_oa":false,"landing_page_url":"https://oa.upm.es/85863/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196323","display_name":"UPM Digital Archive (Technical University of Madrid)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I88060688","host_organization_name":"Universidad Polit\u00e9cnica de Madrid","host_organization_lineage":["https://openalex.org/I88060688"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, ISSN 2041-1480, 2019-11-12, Vol. 10, No. 1","raw_type":"info:eu-repo/semantics/acceptedVersion"},{"id":"pmh:oai:doaj.org/article:032fc0428bee42aebfecfd98fd215865","is_oa":true,"landing_page_url":"https://doaj.org/article/032fc0428bee42aebfecfd98fd215865","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 10, Iss S1, Pp 1-28 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5815371","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6849172","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:runa.sergas.gal:20.500.11940/15971","is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11940/15971","pdf_url":null,"source":{"id":"https://openalex.org/S4306402506","display_name":"RUNA. Repositorio Institucional del Sergas (Servicio Gallego de Salud (SERGAS))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210158352","host_organization_name":"Servicio Gallego de Salud","host_organization_lineage":["https://openalex.org/I4210158352"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s13326-019-0212-6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0212-6","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0212-6","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education","score":0.6200000047683716}],"awards":[{"id":"https://openalex.org/G1456388798","display_name":null,"funder_award_id":"BB/N019547/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4457955224","display_name":null,"funder_award_id":"MR/K006665/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"},{"id":"https://openalex.org/G85687723","display_name":null,"funder_award_id":"EP/N027280/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2986758246.pdf","grobid_xml":"https://content.openalex.org/works/W2986758246.grobid-xml"},"referenced_works_count":76,"referenced_works":["https://openalex.org/W42510333","https://openalex.org/W122282742","https://openalex.org/W186091728","https://openalex.org/W192539577","https://openalex.org/W202767273","https://openalex.org/W204556058","https://openalex.org/W1482585805","https://openalex.org/W1564494788","https://openalex.org/W1573048037","https://openalex.org/W1574901103","https://openalex.org/W1601038846","https://openalex.org/W1854884267","https://openalex.org/W1880262756","https://openalex.org/W1950893908","https://openalex.org/W1967653863","https://openalex.org/W1968226729","https://openalex.org/W1978214950","https://openalex.org/W1983578042","https://openalex.org/W1988624983","https://openalex.org/W1990190154","https://openalex.org/W2033237963","https://openalex.org/W2076766778","https://openalex.org/W2083198897","https://openalex.org/W2084377579","https://openalex.org/W2095588973","https://openalex.org/W2101234009","https://openalex.org/W2105785161","https://openalex.org/W2106952837","https://openalex.org/W2114420708","https://openalex.org/W2117463461","https://openalex.org/W2122402213","https://openalex.org/W2138807684","https://openalex.org/W2142015220","https://openalex.org/W2152143870","https://openalex.org/W2153579005","https://openalex.org/W2156952734","https://openalex.org/W2158139315","https://openalex.org/W2160522235","https://openalex.org/W2162108374","https://openalex.org/W2164019165","https://openalex.org/W2165476957","https://openalex.org/W2169818249","https://openalex.org/W2251157338","https://openalex.org/W2294979170","https://openalex.org/W2304023334","https://openalex.org/W2337640373","https://openalex.org/W2405317410","https://openalex.org/W2412277735","https://openalex.org/W2463051879","https://openalex.org/W2479822985","https://openalex.org/W2509406088","https://openalex.org/W2512419983","https://openalex.org/W2513092886","https://openalex.org/W2540149843","https://openalex.org/W2561675875","https://openalex.org/W2562531153","https://openalex.org/W2579563550","https://openalex.org/W2592783837","https://openalex.org/W2601599354","https://openalex.org/W2611148892","https://openalex.org/W2786360396","https://openalex.org/W2790731199","https://openalex.org/W2793745141","https://openalex.org/W2919115771","https://openalex.org/W2963366649","https://openalex.org/W2963374347","https://openalex.org/W2963419157","https://openalex.org/W2978795816","https://openalex.org/W3036588604","https://openalex.org/W4241275127","https://openalex.org/W4285719527","https://openalex.org/W6607783245","https://openalex.org/W6633616128","https://openalex.org/W6634358093","https://openalex.org/W6639619044","https://openalex.org/W6683234550"],"related_works":["https://openalex.org/W2181465263","https://openalex.org/W3093969907","https://openalex.org/W3202725889","https://openalex.org/W2232750048","https://openalex.org/W2212726445","https://openalex.org/W4244794230","https://openalex.org/W4389712339","https://openalex.org/W2806540758","https://openalex.org/W1822792362","https://openalex.org/W1507779355"],"abstract_inverted_index":{"BACKGROUND:":[0],"Deep":[1,87,97,289],"Learning":[2,88,98,290],"opens":[3],"up":[4],"opportunities":[5],"for":[6,183,247],"routinely":[7],"scanning":[8],"large":[9],"bodies":[10],"of":[11,21,31,113,230,242,255,265,272],"biomedical":[12,22],"literature":[13],"and":[14,23,29,68,80,96,101,126,189,204,284,303,310],"clinical":[15,24,70,130,143],"narratives":[16],"to":[17,61,99,173,195,239],"represent":[18,197],"the":[19,27,92,153,207,218,240,248,253,273],"meaning":[20],"terms.":[25],"However,":[26],"validation":[28],"integration":[30],"this":[32,56],"knowledge":[33,74,103,209,307],"on":[34,152],"a":[35,85,180],"scale":[36],"requires":[37],"cross":[38],"checking":[39],"with":[40,276],"ground":[41],"truths":[42],"(i.e.":[43],"evidence-based":[44],"resources)":[45],"that":[46,90],"are":[47],"unavailable":[48],"in":[49,157],"an":[50,169,227,262],"actionable":[51],"or":[52],"computable":[53,73],"form.":[54],"In":[55],"paper":[57],"we":[58,139,177],"explore":[59],"how":[60,206],"turn":[62],"information":[63],"about":[64,78,104],"diagnoses,":[65],"prognoses,":[66],"therapies":[67],"other":[69],"concepts":[71,144],"into":[72,301],"using":[75,145,175,217,308],"free-text":[76,115,299],"data":[77,300],"human":[79],"animal":[81],"health.":[82],"We":[83,199],"used":[84,194],"Semantic":[86,93,288],"approach":[89,291],"combines":[91],"Web":[94],"technologies":[95],"acquire":[100],"validate":[102],"11":[105],"well-known":[106],"medical":[107],"conditions":[108],"mined":[109],"from":[110,297,312],"two":[111,146,154],"sets":[112],"unstructured":[114,298],"data:":[116],"300":[117],"K":[118],"PubMed":[119],"Systematic":[120],"Review":[121],"articles":[122],"(the":[123,132],"PMSB":[124],"dataset)":[125],"2.5":[127],"M":[128],"veterinary":[129],"notes":[131],"VetCN":[133],"dataset).":[134],"For":[135],"each":[136],"target":[137],"condition":[138],"obtained":[140],"20":[141],"related":[142],"deep":[147],"learning":[148],"methods":[149],"applied":[150,237],"separately":[151],"datasets,":[155],"resulting":[156],"880":[158,249],"term":[159,250,274],"pairs":[160,275],"(target":[161],"term,":[162],"candidate":[163,245],"term).":[164],"Each":[165],"concept,":[166],"represented":[167],"by":[168],"n-gram,":[170],"is":[171,258],"mapped":[172],"UMLS":[174],"MetaMap;":[176],"also":[178,200],"developed":[179],"bespoke":[181],"method":[182],"mapping":[184],"short":[185,256],"forms":[186,257],"(e.g.":[187],"abbreviations":[188],"acronyms).":[190],"Existing":[191],"ontologies":[192,309],"were":[193],"formally":[196],"associations.":[198],"create":[201],"ontological":[202],"modules":[203],"illustrate":[205],"extracted":[208],"can":[210,292],"be":[211],"queried.":[212],"The":[213,287],"evaluation":[214],"was":[215],"performed":[216],"content":[219,311],"within":[220],"BMJ":[221,277,313],"Best":[222,278,314],"Practice.":[223,315],"RESULTS:":[224],"MetaMap":[225,260],"achieves":[226,261],"F":[228,263],"measure":[229,264],"88%":[231],"(precision":[232,267],"85%,":[233],"recall":[234,269],"91%)":[235],"when":[236],"directly":[238],"total":[241],"613":[243],"unique":[244],"terms":[246],"pairs.":[251],"When":[252],"processing":[254],"included,":[259],"94%":[266],"92%,":[268],"96%).":[270],"Validation":[271],"Practice":[279],"yields":[280],"precision":[281],"between":[282],"98":[283],"99%.":[285],"CONCLUSIONS:":[286],"transform":[293],"neural":[294],"embeddings":[295],"built":[296],"reliable":[302],"reusable":[304],"One":[305],"Health":[306]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}