{"id":"https://openalex.org/W2973398987","doi":"https://doi.org/10.1186/s13326-019-0207-3","title":"Automated SNOMED CT concept and attribute relationship detection through a web-based implementation of cTAKES","display_name":"Automated SNOMED CT concept and attribute relationship detection through a web-based implementation of cTAKES","publication_year":2019,"publication_date":"2019-09-18","ids":{"openalex":"https://openalex.org/W2973398987","doi":"https://doi.org/10.1186/s13326-019-0207-3","mag":"2973398987","pmid":"https://pubmed.ncbi.nlm.nih.gov/31533810"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-019-0207-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0207-3","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0207-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0207-3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067103208","display_name":"Martijn G. Kersloot","orcid":"https://orcid.org/0000-0003-3357-3027"},"institutions":[{"id":"https://openalex.org/I4210108594","display_name":"Amsterdam Neuroscience","ror":"https://ror.org/01x2d9f70","country_code":"NL","type":"facility","lineage":["https://openalex.org/I4210108594"]},{"id":"https://openalex.org/I4210151833","display_name":"Amsterdam University Medical Centers","ror":"https://ror.org/05grdyy37","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Martijn G. Kersloot","raw_affiliation_strings":["Department of Medical Informatics, Amsterdam Public Health Research Institute, Amsterdam UMC, University of Amsterdam, Meibergdreef 9, 1105AZ, Amsterdam, The Netherlands. m.g.kersloot@amsterdamumc.nl","Department of Medical Informatics, Amsterdam Public Health Research Institute, Amsterdam UMC, University of Amsterdam, Meibergdreef 9, 1105AZ, Amsterdam, The Netherlands"],"raw_orcid":"https://orcid.org/0000-0003-3357-3027","affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Amsterdam Public Health Research Institute, Amsterdam UMC, University of Amsterdam, Meibergdreef 9, 1105AZ, Amsterdam, The Netherlands. m.g.kersloot@amsterdamumc.nl","institution_ids":["https://openalex.org/I4210108594","https://openalex.org/I4210151833","https://openalex.org/I887064364"]},{"raw_affiliation_string":"Department of Medical Informatics, Amsterdam Public Health Research Institute, Amsterdam UMC, University of Amsterdam, Meibergdreef 9, 1105AZ, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I4210151833","https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038376528","display_name":"Francis Lau","orcid":"https://orcid.org/0000-0001-7010-3281"},"institutions":[{"id":"https://openalex.org/I212119943","display_name":"University of Victoria","ror":"https://ror.org/04s5mat29","country_code":"CA","type":"education","lineage":["https://openalex.org/I212119943"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Francis Lau","raw_affiliation_strings":["School of Health Information Science, University of Victoria, Victoria, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Health Information Science, University of Victoria, Victoria, Canada","institution_ids":["https://openalex.org/I212119943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075388940","display_name":"Ameen Abu\u2013Hanna","orcid":"https://orcid.org/0000-0003-4324-7954"},"institutions":[{"id":"https://openalex.org/I4210151833","display_name":"Amsterdam University Medical Centers","ror":"https://ror.org/05grdyy37","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ameen Abu-Hanna","raw_affiliation_strings":["Department of Medical Informatics, Amsterdam Public Health Research Institute, Amsterdam UMC, University of Amsterdam, Meibergdreef 9, 1105AZ, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Amsterdam Public Health Research Institute, Amsterdam UMC, University of Amsterdam, Meibergdreef 9, 1105AZ, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I4210151833","https://openalex.org/I887064364"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002196485","display_name":"Derk L. Arts","orcid":"https://orcid.org/0000-0001-5702-5856"},"institutions":[{"id":"https://openalex.org/I4210151833","display_name":"Amsterdam University Medical Centers","ror":"https://ror.org/05grdyy37","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Derk L. Arts","raw_affiliation_strings":["Department of Medical Informatics, Amsterdam Public Health Research Institute, Amsterdam UMC, University of Amsterdam, Meibergdreef 9, 1105AZ, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Amsterdam Public Health Research Institute, Amsterdam UMC, University of Amsterdam, Meibergdreef 9, 1105AZ, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I4210151833","https://openalex.org/I887064364"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017129044","display_name":"Ronald Cornet","orcid":"https://orcid.org/0000-0002-1704-5980"},"institutions":[{"id":"https://openalex.org/I4210151833","display_name":"Amsterdam University Medical Centers","ror":"https://ror.org/05grdyy37","country_code":"NL","type":"healthcare","lineage":["https://openalex.org/I4210151833"]},{"id":"https://openalex.org/I887064364","display_name":"University of Amsterdam","ror":"https://ror.org/04dkp9463","country_code":"NL","type":"education","lineage":["https://openalex.org/I887064364"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Ronald Cornet","raw_affiliation_strings":["Department of Medical Informatics, Amsterdam Public Health Research Institute, Amsterdam UMC, University of Amsterdam, Meibergdreef 9, 1105AZ, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medical Informatics, Amsterdam Public Health Research Institute, Amsterdam UMC, University of Amsterdam, Meibergdreef 9, 1105AZ, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I4210151833","https://openalex.org/I887064364"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5067103208"],"corresponding_institution_ids":["https://openalex.org/I4210108594","https://openalex.org/I4210151833","https://openalex.org/I887064364"],"apc_list":{"value":1340,"currency":"USD","value_usd":1340},"apc_paid":{"value":1340,"currency":"USD","value_usd":1340},"fwci":0.3034,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.55015048,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"10","issue":"1","first_page":"14","last_page":"14"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5422000288963318,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.5422000288963318,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.2583000063896179,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.03539999946951866,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.8854912519454956},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.840142011642456},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4823188781738281},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.40128928422927856},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3940114974975586},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3616339862346649},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.16070422530174255}],"concepts":[{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.8854912519454956},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.840142011642456},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4823188781738281},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.40128928422927856},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3940114974975586},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3616339862346649},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.16070422530174255},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002289","descriptor_name":"Carcinoma, Non-Small-Cell Lung","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D002289","descriptor_name":"Carcinoma, Non-Small-Cell Lung","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D002289","descriptor_name":"Carcinoma, Non-Small-Cell Lung","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D008175","descriptor_name":"Lung Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057286","descriptor_name":"Electronic Health Records","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/s13326-019-0207-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0207-3","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0207-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:31533810","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31533810","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:pure.amsterdamumc.nl:openaire_cris_publications/536c8928-5808-4367-a061-4ca68fd5bc36","is_oa":true,"landing_page_url":"https://pure.amsterdamumc.nl/en/publications/536c8928-5808-4367-a061-4ca68fd5bc36","pdf_url":"https://pure.amsterdamumc.nl/ws/files/157495566/Automated-snomed-ct-concept-and-attribute-relationship-detection-through-a-web-based-implementation-of-ctakes.pdf","source":{"id":"https://openalex.org/S7407055222","display_name":"Pure Amsterdam UMC","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Kersloot, M G, Lau, F, Abu-Hanna, A, Arts, D L & Cornet, R 2019, 'Automated SNOMED CT concept and attribute relationship detection through a web-based implementation of cTAKES', Journal of Biomedical Semantics, vol. 10, no. 1, 14. https://doi.org/10.1186/s13326-019-0207-3","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:amcpub:oai:pure.amc.nl:publications/995d3626-48e9-401c-81ab-915062854190","is_oa":true,"landing_page_url":"https://pure.amc.nl/en/publications/automated-snomed-ct-concept-and-attribute-relationship-detection-through-a-webbased-implementation-of-ctakes(995d3626-48e9-401c-81ab-915062854190).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, 10(1):14. BioMed Central Ltd.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:d2b6473c3e3d444a9a13ac1deb48049c","is_oa":true,"landing_page_url":"https://doaj.org/article/d2b6473c3e3d444a9a13ac1deb48049c","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 10, Iss 1, Pp 1-13 (2019)","raw_type":"article"},{"id":"pmh:oai:dspace.library.uvic.ca:1828/12409","is_oa":false,"landing_page_url":"http://hdl.handle.net/1828/12409","pdf_url":null,"source":{"id":"https://openalex.org/S4306401509","display_name":"UVic\u2019s Research and Learning Repository (University of Victoria)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I212119943","host_organization_name":"University of Victoria","host_organization_lineage":["https://openalex.org/I212119943"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6749652","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6749652","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-019-0207-3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0207-3","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0207-3","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.7799999713897705}],"awards":[{"id":"https://openalex.org/G1765315561","display_name":null,"funder_award_id":"KWV-00163","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2973398987.pdf","grobid_xml":"https://content.openalex.org/works/W2973398987.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W17929806","https://openalex.org/W898365131","https://openalex.org/W1489596328","https://openalex.org/W1601247733","https://openalex.org/W1984291951","https://openalex.org/W2042484288","https://openalex.org/W2072604363","https://openalex.org/W2114388055","https://openalex.org/W2116972869","https://openalex.org/W2122836712","https://openalex.org/W2146089916","https://openalex.org/W2149527488","https://openalex.org/W2169818249","https://openalex.org/W2513879842","https://openalex.org/W2555887493","https://openalex.org/W2735580341","https://openalex.org/W2798935874"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2039735462","https://openalex.org/W4297803142","https://openalex.org/W2951665393","https://openalex.org/W2770499767","https://openalex.org/W2295806952","https://openalex.org/W2293521960","https://openalex.org/W172101468","https://openalex.org/W131864321","https://openalex.org/W4237480647"],"abstract_inverted_index":{"Abstract":[0],"Background":[1],"Information":[2],"in":[3,23,45,70,281,305],"Electronic":[4],"Health":[5],"Records":[6],"is":[7,34],"largely":[8],"stored":[9],"as":[10],"unstructured":[11],"free":[12,31],"text.":[13],"Natural":[14],"language":[15],"processing":[16],"(NLP),":[17],"or":[18,49],"Medical":[19],"Language":[20],"Processing":[21],"(MLP)":[22],"medicine,":[24],"aims":[25],"at":[26],"extracting":[27],"structured":[28],"information":[29],"from":[30],"text,":[32],"and":[33,37,55,73,88,103,130,135,166,179,199,211,213,216,238,243,265,271,279,292,298,324,333,342,355],"less":[35],"expensive":[36],"time-consuming":[38],"than":[39],"manual":[40,347],"extraction.":[41],"However,":[42],"most":[43,63],"algorithms":[44,96,134],"MLP":[46,64,91,114],"are":[47],"institution-specific":[48],"address":[50],"only":[51],"one":[52],"clinical":[53,340],"need,":[54],"thus":[56,344],"cannot":[57,74],"be":[58,336],"broadly":[59],"applied.":[60],"In":[61],"addition,":[62],"systems":[65],"do":[66],"not":[67],"detect":[68,75,289,300],"concepts":[69,102,172,204,267,291,332],"misspelled":[71],"text":[72],"attribute":[76,105,131,167,293],"relationships":[77,106,294,334],"between":[78,107,209,214,241],"concepts.":[79],"The":[80,157,181,219,253],"objective":[81],"of":[82,100,104,112,141,155,183,231,251,255,258,276,314,320],"this":[83],"study":[84],"was":[85,119,161,187,222],"to":[86,234,274,310,317,338],"develop":[87],"evaluate":[89],"an":[90,247],"application":[92],"that":[93],"includes":[94],"generic":[95,122,326],"for":[97,163,170,353],"the":[98,113,153,171,184,235,239,256,282,311,318],"detection":[99,133,169,257,329],"(misspelled)":[101],"them.":[108],"Methods":[109],"An":[110],"implementation":[111,313],"system":[115],"cTAKES,":[116,315],"called":[117],"DIRECT,":[118],"developed":[120],"with":[121,152,189,205,224,246,295,302],"SNOMED":[123],"CT":[124],"concept":[125,127,220,327],"filter,":[126],"relationship":[128,132,168,240,328],"detection,":[129],"a":[136,190,225,321,325],"custom":[137,322],"dictionary.":[138],"Four":[139],"implementations":[140,186],"cTAKES":[142],"were":[143,268],"evaluated":[144],"by":[145],"comparing":[146],"98":[147],"manually":[148],"annotated":[149],"oncology":[150,290],"charts":[151],"output":[154],"DIRECT.":[156],"F":[158,206,228,248,306],"1":[159,207,229,249,307],"-score":[160,230,250],"determined":[162],"named-entity":[164],"recognition":[165],"\u2018lung":[173],"cancer\u2019,":[174,178],"\u2018non-small":[175],"cell":[176,201,262],"lung":[177,197,202,244,259,263],"\u2018recurrence\u2019.":[180],"performance":[182],"four":[185],"compared":[188,233,273,309],"two-tailed":[191],"permutation":[192],"test.":[193],"Results":[194],"DIRECT":[195,287],"detected":[196,223],"cancer":[198,203,245],"non-small":[200,261],"-scores":[208],"0.828":[210],"0.947":[212],"0.862":[215],"0.933,":[217],"respectively.":[218,285],"recurrence":[221,242,266,301],"significantly":[226],"higher":[227],"0.921,":[232],"other":[236],"implementations,":[237],"0.857.":[252],"precision":[254,297],"cancer,":[260,264],"1.000,":[269],"0.966,":[270],"0.879,":[272],"precisions":[275],"0.943,":[277],"0.967,":[278],"0.000":[280],"original":[283,312],"implementation,":[284],"Conclusion":[286],"can":[288,299,335,343],"high":[296],"significant":[303],"increase":[304],"-score,":[308],"due":[316],"usage":[319],"dictionary":[323],"algorithm.":[330],"These":[331],"used":[337],"encode":[339],"narratives,":[341],"substantially":[345],"reduce":[346],"chart":[348],"abstraction":[349],"efforts,":[350],"saving":[351],"time":[352],"clinicians":[354],"researchers.":[356]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
