{"id":"https://openalex.org/W2961673996","doi":"https://doi.org/10.1186/s13326-019-0205-5","title":"Phenotype annotation with the ontology of microbial phenotypes (OMP)","display_name":"Phenotype annotation with the ontology of microbial phenotypes (OMP)","publication_year":2019,"publication_date":"2019-07-15","ids":{"openalex":"https://openalex.org/W2961673996","doi":"https://doi.org/10.1186/s13326-019-0205-5","mag":"2961673996","pmid":"https://pubmed.ncbi.nlm.nih.gov/31307550"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-019-0205-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0205-5","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-019-0205-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-019-0205-5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008023525","display_name":"Deborah A. Siegele","orcid":"https://orcid.org/0000-0001-8935-0696"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deborah A. Siegele","raw_affiliation_strings":["Department of Biology, Texas A&M University, College Station, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Texas A&M University, College Station, TX, USA","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016671030","display_name":"Sandra LaBonte","orcid":"https://orcid.org/0000-0002-9618-3336"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sandra A. LaBonte","raw_affiliation_strings":["Department of Biochemistry and Biophysics, Texas A&M University and Texas AgriLife Research, College Station, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Biophysics, Texas A&M University and Texas AgriLife Research, College Station, TX, USA","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017116530","display_name":"Peter I-Fan Wu","orcid":"https://orcid.org/0000-0001-5570-4871"},"institutions":[{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Peter I-Fan Wu","raw_affiliation_strings":["Department of Biochemistry and Biophysics, Texas A&M University and Texas AgriLife Research, College Station, TX, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Biophysics, Texas A&M University and Texas AgriLife Research, College Station, TX, USA","institution_ids":["https://openalex.org/I91045830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073336838","display_name":"Marcus C. Chibucos","orcid":"https://orcid.org/0000-0001-9586-0780"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcus C. Chibucos","raw_affiliation_strings":["Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043029244","display_name":"Suvarna Nandendla","orcid":null},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Suvarna Nandendla","raw_affiliation_strings":["Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043784429","display_name":"Michelle Giglio","orcid":"https://orcid.org/0000-0001-7628-5565"},"institutions":[{"id":"https://openalex.org/I126744593","display_name":"University of Maryland, Baltimore","ror":"https://ror.org/04rq5mt64","country_code":"US","type":"education","lineage":["https://openalex.org/I126744593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michelle G. Giglio","raw_affiliation_strings":["Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, MD, USA","institution_ids":["https://openalex.org/I126744593"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089370746","display_name":"James C. Hu","orcid":"https://orcid.org/0000-0001-9016-2684"},"institutions":[{"id":"https://openalex.org/I173268674","display_name":"Texas A&M University System","ror":"https://ror.org/0034eay46","country_code":"US","type":"education","lineage":["https://openalex.org/I173268674"]},{"id":"https://openalex.org/I91045830","display_name":"Texas A&M University","ror":"https://ror.org/01f5ytq51","country_code":"US","type":"education","lineage":["https://openalex.org/I91045830"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"James C. Hu","raw_affiliation_strings":["Department of Biochemistry and Biophysics, Texas A&M University and Texas AgriLife Research, College Station, TX, USA. jimhu@tamu.edu","Department of Biochemistry and Biophysics, Texas A&M University and Texas AgriLife Research, College Station, TX, USA"],"raw_orcid":"https://orcid.org/0000-0001-9016-2684","affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Biophysics, Texas A&M University and Texas AgriLife Research, College Station, TX, USA. jimhu@tamu.edu","institution_ids":["https://openalex.org/I91045830","https://openalex.org/I173268674"]},{"raw_affiliation_string":"Department of Biochemistry and Biophysics, Texas A&M University and Texas AgriLife Research, College Station, TX, USA","institution_ids":["https://openalex.org/I91045830"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5089370746"],"corresponding_institution_ids":["https://openalex.org/I173268674","https://openalex.org/I91045830"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.6839,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.69089105,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":98},"biblio":{"volume":"10","issue":"1","first_page":"13","last_page":"13"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7588000297546387,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7588000297546387,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.09989999979734421,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.01759999990463257,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.8655960559844971},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7046130895614624},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6782689094543457},{"id":"https://openalex.org/keywords/phenomics","display_name":"Phenomics","score":0.6609092950820923},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.6094714999198914},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5156913995742798},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.4362903833389282},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.40012431144714355},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3696867823600769},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35961735248565674},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2705387473106384},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.25369757413864136},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.14628520607948303},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14550241827964783},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10445928573608398}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.8655960559844971},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7046130895614624},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6782689094543457},{"id":"https://openalex.org/C98108635","wikidata":"https://www.wikidata.org/wiki/Q6497275","display_name":"Phenomics","level":5,"score":0.6609092950820923},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.6094714999198914},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5156913995742798},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.4362903833389282},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.40012431144714355},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3696867823600769},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35961735248565674},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2705387473106384},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.25369757413864136},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.14628520607948303},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14550241827964783},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10445928573608398},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008829","descriptor_name":"Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008829","descriptor_name":"Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008829","descriptor_name":"Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D066289","descriptor_name":"Data Curation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/s13326-019-0205-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0205-5","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-019-0205-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:31307550","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31307550","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:doaj.org/article:6daf3d265be544e79a2fd6df458680f1","is_oa":true,"landing_page_url":"https://doaj.org/article/6daf3d265be544e79a2fd6df458680f1","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 10, Iss 1, Pp 1-8 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6631659","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6631659","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-019-0205-5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0205-5","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-019-0205-5","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5,"display_name":"Industry, innovation and infrastructure"}],"awards":[{"id":"https://openalex.org/G3179820178","display_name":null,"funder_award_id":"U41 HG008735","funder_id":"https://openalex.org/F4320337348","funder_display_name":"National Human Genome Research Institute"},{"id":"https://openalex.org/G356325050","display_name":null,"funder_award_id":"GM089636","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G36244522","display_name":null,"funder_award_id":"U41HG008735","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3904836238","display_name":null,"funder_award_id":"1458400","funder_id":"https://openalex.org/F4320337398","funder_display_name":"Division of Biological Infrastructure"},{"id":"https://openalex.org/G4700364562","display_name":"ABI Development: An ontology of evidence types to support biological data management","funder_award_id":"1458400","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G4865241161","display_name":null,"funder_award_id":"R01GM089636","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6630892071","display_name":null,"funder_award_id":"R01 GM089636","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2961673996.pdf","grobid_xml":"https://content.openalex.org/works/W2961673996.grobid-xml"},"referenced_works_count":27,"referenced_works":["https://openalex.org/W1424165420","https://openalex.org/W1495924766","https://openalex.org/W1979059636","https://openalex.org/W2017247892","https://openalex.org/W2022451103","https://openalex.org/W2031947878","https://openalex.org/W2048593866","https://openalex.org/W2076255419","https://openalex.org/W2077739444","https://openalex.org/W2097877306","https://openalex.org/W2099685256","https://openalex.org/W2102983252","https://openalex.org/W2103260426","https://openalex.org/W2120428260","https://openalex.org/W2142437744","https://openalex.org/W2162385209","https://openalex.org/W2169621668","https://openalex.org/W2302501749","https://openalex.org/W2341651398","https://openalex.org/W2407174002","https://openalex.org/W2439884918","https://openalex.org/W2521644033","https://openalex.org/W2562274706","https://openalex.org/W2773787581","https://openalex.org/W2790735372","https://openalex.org/W2900353268","https://openalex.org/W4210365506"],"related_works":["https://openalex.org/W4249881829","https://openalex.org/W2953048636","https://openalex.org/W304886144","https://openalex.org/W4387031483","https://openalex.org/W2918339067","https://openalex.org/W2150403567","https://openalex.org/W2325942054","https://openalex.org/W4288220925","https://openalex.org/W2733608569","https://openalex.org/W2084925037"],"abstract_inverted_index":{"BACKGROUND:":[0],"Microbial":[1,35],"genetics":[2],"has":[3,95],"formed":[4],"a":[5,58,72,124],"foundation":[6],"for":[7,24,48,65,89,123,141],"understanding":[8],"many":[9],"aspects":[10],"of":[11,34,57,60,68,74,126,137],"biology.":[12],"Systematic":[13],"annotation":[14,51,107,131],"that":[15,53],"supports":[16,54],"computational":[17],"data":[18,103,142],"mining":[19,143],"should":[20,133],"reveal":[21],"further":[22],"insights":[23],"microbes,":[25],"microbiomes,":[26],"and":[27,62,76,80,91,144],"conserved":[28],"functions":[29],"beyond":[30],"microbes.":[31,127],"The":[32,106],"Ontology":[33,84],"Phenotypes":[36],"(OMP)":[37],"was":[38],"created":[39],"to":[40,98,113,116],"support":[41,114,134],"such":[42],"annotation.":[43],"RESULTS:":[44],"We":[45],"define":[46],"standards":[47],"an":[49],"OMP-based":[50],"framework":[52,108],"the":[55,120,129,135],"capture":[56,117],"variety":[59,125],"phenotypes":[61,118],"provides":[63],"flexibility":[64],"different":[66],"levels":[67],"detail":[69],"based":[70],"on":[71],"combination":[73],"pre-":[75],"post-composition":[77],"using":[78],"OMP":[79,93,130],"other":[81],"Open":[82],"Biomedical":[83],"(OBO)":[85],"projects.":[86],"A":[87],"system":[88],"entering":[90],"viewing":[92],"annotations":[94],"been":[96],"added":[97],"our":[99],"online,":[100],"public,":[101],"web-based":[102],"portal.":[104],"CONCLUSIONS:":[105],"described":[109],"here":[110],"is":[111],"ready":[112],"projects":[115],"from":[119],"experimental":[121],"literature":[122],"Defining":[128],"standard":[132],"development":[136],"new":[138],"software":[139],"tools":[140],"analysis":[145],"in":[146],"comparative":[147],"phenomics.":[148]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":6}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}