{"id":"https://openalex.org/W2952756500","doi":"https://doi.org/10.1186/s13326-019-0200-x","title":"Similarity corpus on microbial transcriptional regulation","display_name":"Similarity corpus on microbial transcriptional regulation","publication_year":2019,"publication_date":"2019-05-22","ids":{"openalex":"https://openalex.org/W2952756500","doi":"https://doi.org/10.1186/s13326-019-0200-x","mag":"2952756500"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-019-0200-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0200-x","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0200-x","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0200-x","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074701315","display_name":"Oscar Lithgow-Serrano","orcid":"https://orcid.org/0000-0003-1995-1669"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":true,"raw_author_name":"Oscar Lithgow-Serrano","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","Instituto de Investigaciones en Matem\u00e1ticas Aplicadas y en Sistemas (IIMAS), Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM), Mexico City, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"Instituto de Investigaciones en Matem\u00e1ticas Aplicadas y en Sistemas (IIMAS), Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM), Mexico City, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033098879","display_name":"Socorro Gama\u2010Castro","orcid":"https://orcid.org/0000-0001-7708-5143"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Socorro Gama-Castro","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089360167","display_name":"Cecilia Ishida-Guti\u00e9rrez","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Cecilia Ishida-Guti\u00e9rrez","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072041510","display_name":"Citlalli Mej\u00eda-Almonte","orcid":"https://orcid.org/0000-0002-0142-5591"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Citlalli Mej\u00eda-Almonte","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069620802","display_name":"V\u00edctor H. Tierrafr\u00eda","orcid":"https://orcid.org/0000-0003-3506-8657"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"V\u00edctor H. Tierrafr\u00eda","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072966609","display_name":"Sara Berenice Mart\u00ednez-Luna","orcid":null},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Sara Mart\u00ednez-Luna","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026565466","display_name":"Alberto Santos-Zavaleta","orcid":"https://orcid.org/0000-0002-2178-4006"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Alberto Santos-Zavaleta","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000182215","display_name":"David A. Vel\u00e1zquez-Ram\u00edrez","orcid":"https://orcid.org/0000-0002-7893-8467"},"institutions":[{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"David Vel\u00e1zquez-Ram\u00edrez","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico"],"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079232768","display_name":"Julio Collado\u2010Vides","orcid":"https://orcid.org/0000-0001-8780-7664"},"institutions":[{"id":"https://openalex.org/I111088046","display_name":"Boston University","ror":"https://ror.org/05qwgg493","country_code":"US","type":"education","lineage":["https://openalex.org/I111088046"]},{"id":"https://openalex.org/I8961855","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25","country_code":"MX","type":"education","lineage":["https://openalex.org/I8961855"]}],"countries":["MX","US"],"is_corresponding":false,"raw_author_name":"Julio Collado-Vides","raw_affiliation_strings":["Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","Department of Biomedical Engineering, Boston University, Boston, Massachusetts, USA"],"affiliations":[{"raw_affiliation_string":"Computational Genomics, Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (UNAM). A.P., 565-A Cuernavaca, Morelos, 62100, M\u00e9xico","institution_ids":["https://openalex.org/I8961855"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Boston University, Boston, Massachusetts, USA","institution_ids":["https://openalex.org/I111088046"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5074701315"],"corresponding_institution_ids":["https://openalex.org/I8961855"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":1.1561,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.84184796,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"10","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9822999835014343,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8694897890090942},{"id":"https://openalex.org/keywords/semantic-similarity","display_name":"Semantic similarity","score":0.6531428694725037},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6456140279769897},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5952444076538086},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5772724151611328},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5561985373497009},{"id":"https://openalex.org/keywords/distributional-semantics","display_name":"Distributional semantics","score":0.5322703123092651},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4930219352245331},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.48591986298561096},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.466139018535614},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.45259854197502136},{"id":"https://openalex.org/keywords/data-curation","display_name":"Data curation","score":0.4486334025859833},{"id":"https://openalex.org/keywords/semeval","display_name":"SemEval","score":0.43218743801116943},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4275696873664856},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.41412025690078735},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.41073575615882874},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.2966685891151428}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8694897890090942},{"id":"https://openalex.org/C130318100","wikidata":"https://www.wikidata.org/wiki/Q2268914","display_name":"Semantic similarity","level":2,"score":0.6531428694725037},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6456140279769897},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5952444076538086},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5772724151611328},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5561985373497009},{"id":"https://openalex.org/C2778828372","wikidata":"https://www.wikidata.org/wiki/Q5283209","display_name":"Distributional semantics","level":3,"score":0.5322703123092651},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4930219352245331},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.48591986298561096},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.466139018535614},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.45259854197502136},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.4486334025859833},{"id":"https://openalex.org/C44572571","wikidata":"https://www.wikidata.org/wiki/Q7448970","display_name":"SemEval","level":3,"score":0.43218743801116943},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4275696873664856},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.41412025690078735},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.41073575615882874},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.2966685891151428},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/s13326-019-0200-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0200-x","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0200-x","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:f133b23bf096497ca7efcbaa05005aec","is_oa":true,"landing_page_url":"https://doaj.org/article/f133b23bf096497ca7efcbaa05005aec","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 10, Iss 1, Pp 1-14 (2019)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:6532127","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6532127","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-019-0200-x","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0200-x","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-019-0200-x","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.8299999833106995,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G3081380025","display_name":null,"funder_award_id":"project","funder_id":"https://openalex.org/F4320321739","funder_display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda"},{"id":"https://openalex.org/G3611247453","display_name":null,"funder_award_id":"R01GM","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G3757586627","display_name":null,"funder_award_id":"5R01GM110597-03","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4476610272","display_name":null,"funder_award_id":"CONACYT","funder_id":"https://openalex.org/F4320323401","funder_display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico"},{"id":"https://openalex.org/G4559350484","display_name":null,"funder_award_id":"576333","funder_id":"https://openalex.org/F4320321739","funder_display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda"},{"id":"https://openalex.org/G5071843003","display_name":null,"funder_award_id":"CONACyT","funder_id":"https://openalex.org/F4320321739","funder_display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda"},{"id":"https://openalex.org/G5499204724","display_name":null,"funder_award_id":"R01GM110597","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7118753681","display_name":null,"funder_award_id":"Programa","funder_id":"https://openalex.org/F4320323401","funder_display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico"},{"id":"https://openalex.org/G7828757556","display_name":null,"funder_award_id":"FOINS Fronteras de la Ciencia [project 15]","funder_id":"https://openalex.org/F4320321739","funder_display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda"}],"funders":[{"id":"https://openalex.org/F4320321739","display_name":"Consejo Nacional de Ciencia y Tecnolog\u00eda","ror":"https://ror.org/059ex5q34"},{"id":"https://openalex.org/F4320323401","display_name":"Universidad Nacional Aut\u00f3noma de M\u00e9xico","ror":"https://ror.org/01tmp8f25"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2952756500.pdf","grobid_xml":"https://content.openalex.org/works/W2952756500.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W68566686","https://openalex.org/W73568656","https://openalex.org/W1664649366","https://openalex.org/W1921587136","https://openalex.org/W1966976587","https://openalex.org/W1975879668","https://openalex.org/W1996445490","https://openalex.org/W2008749430","https://openalex.org/W2016377072","https://openalex.org/W2020438140","https://openalex.org/W2024823706","https://openalex.org/W2031489346","https://openalex.org/W2037557484","https://openalex.org/W2049988375","https://openalex.org/W2053154970","https://openalex.org/W2080100102","https://openalex.org/W2094111439","https://openalex.org/W2104630935","https://openalex.org/W2124379907","https://openalex.org/W2124874361","https://openalex.org/W2136148671","https://openalex.org/W2152180407","https://openalex.org/W2155243985","https://openalex.org/W2164777277","https://openalex.org/W2232370058","https://openalex.org/W2256323257","https://openalex.org/W2325963232","https://openalex.org/W2479688594","https://openalex.org/W2515506406","https://openalex.org/W2585626124","https://openalex.org/W2595510158","https://openalex.org/W2735784619","https://openalex.org/W2736397884","https://openalex.org/W2900007277","https://openalex.org/W2946028604","https://openalex.org/W4243177274","https://openalex.org/W4285719527","https://openalex.org/W4294214983"],"related_works":["https://openalex.org/W2752041471","https://openalex.org/W78638240","https://openalex.org/W2252122760","https://openalex.org/W2105461184","https://openalex.org/W1840682977","https://openalex.org/W4299488910","https://openalex.org/W4386468556","https://openalex.org/W59191841","https://openalex.org/W2502814102","https://openalex.org/W3202920633"],"abstract_inverted_index":{"The":[0],"ability":[1],"to":[2,68,87,104,169],"express":[3],"the":[4,21,31,69,74,109,120,152,156,162,181,199,206,220],"same":[5],"meaning":[6],"in":[7,26,34,64,82,155,172,180,235],"different":[8],"ways":[9],"is":[10,20,205],"a":[11,58,89,148,191],"well-known":[12],"property":[13,19],"of":[14,23,52,71,73,113,119,140,150,201,211,213,223,228],"natural":[15,27,244],"language.":[16],"This":[17],"amazing":[18],"source":[22],"major":[24],"difficulties":[25],"language":[28,245],"processing.":[29,246],"Given":[30,61],"constant":[32],"increase":[33],"published":[35],"literature,":[36,76],"its":[37,233],"curation":[38,72,240],"and":[39,98,127,184],"information":[40],"extraction":[41],"would":[42],"strongly":[43],"benefit":[44,70],"from":[45,147],"efficient":[46],"automatic":[47],"processes,":[48],"for":[49,189,215],"which":[50,216],"corpora":[51],"sentences":[53,141,214],"evaluated":[54,95,143],"by":[55,96,144],"experts":[56,218],"are":[57],"valuable":[59],"resource.":[60],"our":[62,105,170,202,236],"interest":[63],"applying":[65],"such":[66,190],"approaches":[67],"biomedical":[75],"specifically":[77,102],"that":[78,99],"about":[79],"gene":[80],"regulation":[81],"microbial":[83],"organisms,":[84],"we":[85,116],"decided":[86],"build":[88],"corpus":[90,192],"with":[91,177],"graded":[92],"textual":[93],"similarity":[94,158,208,222],"curators":[97],"was":[100,136,142,167],"designed":[101],"oriented":[103],"purposes.":[106],"Based":[107],"on":[108,243],"predefined":[110],"statistical":[111],"power":[112],"future":[114],"analyses,":[115],"defined":[117],"features":[118],"design,":[121],"including":[122],"sampling,":[123],"selection":[124],"criteria,":[125],"balance,":[126],"size,":[128],"among":[129],"others.":[130],"A":[131],"non-fully":[132],"crossed":[133],"study":[134],"design":[135],"applied.":[137],"Each":[138],"pair":[139],"3":[145],"annotators":[146],"total":[149],"7;":[151],"scale":[153],"used":[154],"semantic":[157,221],"assessment":[159],"task":[160],"within":[161],"Semantic":[163],"Evaluation":[164],"workshop":[165],"(SEMEVAL)":[166],"adapted":[168],"goals":[171],"four":[173],"successive":[174],"iterative":[175],"sessions":[176],"clear":[178],"improvements":[179],"agreed":[182],"guidelines":[183],"interrater":[185],"reliability":[186],"results.":[187],"Alternatives":[188],"evaluation":[193],"have":[194,231],"been":[195],"widely":[196],"discussed.":[197],"To":[198],"best":[200],"knowledge,":[203],"this":[204,226],"first":[207],"corpus\u2014a":[209],"dataset":[210],"pairs":[212],"human":[217],"rate":[219],"each":[224],"pair\u2014in":[225],"domain":[227],"knowledge.":[229],"We":[230],"initiated":[232],"incorporation":[234],"research":[237],"towards":[238],"high-throughput":[239],"strategies":[241],"based":[242]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-14T08:04:32.555800","created_date":"2025-10-10T00:00:00"}
