{"id":"https://openalex.org/W2519950442","doi":"https://doi.org/10.1186/s13326-019-0196-2","title":"Levels and building blocks\u2014toward a domain granularity framework for the life sciences","display_name":"Levels and building blocks\u2014toward a domain granularity framework for the life sciences","publication_year":2019,"publication_date":"2019-01-28","ids":{"openalex":"https://openalex.org/W2519950442","doi":"https://doi.org/10.1186/s13326-019-0196-2","mag":"2519950442","pmid":"https://pubmed.ncbi.nlm.nih.gov/30691505"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-019-0196-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0196-2","pdf_url":null,"source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1186/s13326-019-0196-2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022190846","display_name":"Lars Vogt","orcid":"https://orcid.org/0000-0002-8280-0487"},"institutions":[{"id":"https://openalex.org/I135140700","display_name":"University of Bonn","ror":"https://ror.org/041nas322","country_code":"DE","type":"education","lineage":["https://openalex.org/I135140700"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Lars Vogt","raw_affiliation_strings":["Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Institut f\u00fcr Evolutionsbiologie und \u00d6kologie, An der Immenburg 1, 53121, Bonn, Germany. lars.m.vogt@gmail.com","Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Institut f\u00fcr Evolutionsbiologie und \u00d6kologie, An der Immenburg 1, 53121, Bonn, Germany"],"affiliations":[{"raw_affiliation_string":"Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Institut f\u00fcr Evolutionsbiologie und \u00d6kologie, An der Immenburg 1, 53121, Bonn, Germany. lars.m.vogt@gmail.com","institution_ids":[]},{"raw_affiliation_string":"Rheinische Friedrich-Wilhelms-Universit\u00e4t Bonn, Institut f\u00fcr Evolutionsbiologie und \u00d6kologie, An der Immenburg 1, 53121, Bonn, Germany","institution_ids":["https://openalex.org/I135140700"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5022190846"],"corresponding_institution_ids":["https://openalex.org/I135140700"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":1.3701,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.80581361,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"10","issue":"1","first_page":"4","last_page":"4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9876000285148621,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/granularity","display_name":"Granularity","score":0.8664596080780029},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7801718711853027},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5992022752761841},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5661199688911438},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3652092516422272},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.35551920533180237},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1207340657711029}],"concepts":[{"id":"https://openalex.org/C177774035","wikidata":"https://www.wikidata.org/wiki/Q1246948","display_name":"Granularity","level":2,"score":0.8664596080780029},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7801718711853027},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5992022752761841},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5661199688911438},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3652092516422272},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.35551920533180237},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1207340657711029},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001690","descriptor_name":"Biological Science Disciplines","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002462","descriptor_name":"Cell Membrane","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004848","descriptor_name":"Epithelium","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004848","descriptor_name":"Epithelium","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004848","descriptor_name":"Epithelium","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s13326-019-0196-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0196-2","pdf_url":null,"source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:30691505","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30691505","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:doaj.org/article:47d1c5630c6542b2934d44024b1f0f34","is_oa":true,"landing_page_url":"https://doaj.org/article/47d1c5630c6542b2934d44024b1f0f34","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 10, Iss 1, Pp 1-29 (2019)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5336856","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6348634","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-019-0196-2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-019-0196-2","pdf_url":null,"source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1689378081","display_name":null,"funder_award_id":"VO 1244/8-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":137,"referenced_works":["https://openalex.org/W38654036","https://openalex.org/W70048713","https://openalex.org/W89025026","https://openalex.org/W89894754","https://openalex.org/W125549422","https://openalex.org/W143122574","https://openalex.org/W143199027","https://openalex.org/W402135784","https://openalex.org/W579787008","https://openalex.org/W595866631","https://openalex.org/W622434976","https://openalex.org/W646443633","https://openalex.org/W1505011908","https://openalex.org/W1511436206","https://openalex.org/W1513316261","https://openalex.org/W1522541236","https://openalex.org/W1531373288","https://openalex.org/W1533244802","https://openalex.org/W1536870650","https://openalex.org/W1548329420","https://openalex.org/W1548540553","https://openalex.org/W1550375751","https://openalex.org/W1556055152","https://openalex.org/W1562618644","https://openalex.org/W1586700544","https://openalex.org/W1588942736","https://openalex.org/W1589549454","https://openalex.org/W1593581803","https://openalex.org/W1597441848","https://openalex.org/W1601871798","https://openalex.org/W1602150772","https://openalex.org/W1605657873","https://openalex.org/W1608815502","https://openalex.org/W1641482867","https://openalex.org/W1645338881","https://openalex.org/W1802346448","https://openalex.org/W1865748464","https://openalex.org/W1971097461","https://openalex.org/W1971403646","https://openalex.org/W1975355239","https://openalex.org/W1981021538","https://openalex.org/W1983922192","https://openalex.org/W1985624710","https://openalex.org/W1990451873","https://openalex.org/W1995156820","https://openalex.org/W1995854528","https://openalex.org/W1996599952","https://openalex.org/W2006871421","https://openalex.org/W2008222229","https://openalex.org/W2009324633","https://openalex.org/W2014597054","https://openalex.org/W2016602738","https://openalex.org/W2022730625","https://openalex.org/W2025003991","https://openalex.org/W2031297959","https://openalex.org/W2034665986","https://openalex.org/W2036500972","https://openalex.org/W2038836884","https://openalex.org/W2045577654","https://openalex.org/W2046413375","https://openalex.org/W2048786492","https://openalex.org/W2049359703","https://openalex.org/W2050894244","https://openalex.org/W2052499365","https://openalex.org/W2053973914","https://openalex.org/W2057060574","https://openalex.org/W2058311858","https://openalex.org/W2064025050","https://openalex.org/W2070200042","https://openalex.org/W2074562634","https://openalex.org/W2079455354","https://openalex.org/W2090393235","https://openalex.org/W2091215708","https://openalex.org/W2097615668","https://openalex.org/W2099069868","https://openalex.org/W2103260426","https://openalex.org/W2105920653","https://openalex.org/W2105925956","https://openalex.org/W2109159465","https://openalex.org/W2113142309","https://openalex.org/W2115986989","https://openalex.org/W2119666497","https://openalex.org/W2123257600","https://openalex.org/W2123868074","https://openalex.org/W2124485656","https://openalex.org/W2130706201","https://openalex.org/W2133992441","https://openalex.org/W2136963053","https://openalex.org/W2138138331","https://openalex.org/W2148014577","https://openalex.org/W2150838945","https://openalex.org/W2158648246","https://openalex.org/W2158916711","https://openalex.org/W2160292112","https://openalex.org/W2160674432","https://openalex.org/W2163670493","https://openalex.org/W2168592098","https://openalex.org/W2172172820","https://openalex.org/W2173054425","https://openalex.org/W2174926329","https://openalex.org/W2200124698","https://openalex.org/W2226271864","https://openalex.org/W2313102193","https://openalex.org/W2399869838","https://openalex.org/W2403694475","https://openalex.org/W2415540379","https://openalex.org/W2484144534","https://openalex.org/W2485870237","https://openalex.org/W2491517473","https://openalex.org/W2552612469","https://openalex.org/W2591632360","https://openalex.org/W2725767984","https://openalex.org/W2735998783","https://openalex.org/W2774789921","https://openalex.org/W2793673667","https://openalex.org/W2910027293","https://openalex.org/W2966205844","https://openalex.org/W2978851794","https://openalex.org/W3190439865","https://openalex.org/W4233459387","https://openalex.org/W4235382474","https://openalex.org/W4236393562","https://openalex.org/W4239250371","https://openalex.org/W4240701545","https://openalex.org/W4243454840","https://openalex.org/W4244212082","https://openalex.org/W4248139934","https://openalex.org/W4248868925","https://openalex.org/W4254273213","https://openalex.org/W4256222687","https://openalex.org/W4285719527","https://openalex.org/W6602130902","https://openalex.org/W6603104034","https://openalex.org/W6630335335","https://openalex.org/W6660313071","https://openalex.org/W6681676053","https://openalex.org/W6925038198"],"related_works":["https://openalex.org/W2931688134","https://openalex.org/W2377919138","https://openalex.org/W2378857091","https://openalex.org/W103652678","https://openalex.org/W4226090359","https://openalex.org/W2059697060","https://openalex.org/W936373746","https://openalex.org/W2975817033","https://openalex.org/W2166690231","https://openalex.org/W2950637221"],"abstract_inverted_index":{"The":[0],"domain":[1],"granularity":[2,40,67],"framework":[3,18,33,43],"suggested":[4],"here":[5],"is":[6],"meant":[7],"to":[8],"provide":[9,28,74],"the":[10,20,29,52],"basis":[11,77],"on":[12],"which":[13,26],"a":[14,75],"more":[15],"comprehensive":[16],"information":[17],"for":[19,34,47,63,78,85],"life":[21,53],"sciences":[22],"can":[23,44,60],"be":[24,45,61],"developed,":[25],"would":[27,73],"much":[30],"needed":[31],"conceptual":[32],"representing":[35],"domains":[36],"that":[37],"cover":[38],"multiple":[39],"levels.":[41],"This":[42],"used":[46],"intuitively":[48],"structuring":[49],"data":[50,56,82],"in":[51],"sciences,":[54],"facilitating":[55],"exploration,":[57],"and":[58,84],"it":[59],"employed":[62],"reasoning":[64],"over":[65],"different":[66,70],"levels":[68],"across":[69],"hierarchies.":[71],"It":[72],"methodological":[76],"establishing":[79],"comparability":[80],"between":[81],"sets":[83],"quantitatively":[86],"measuring":[87],"their":[88],"degree":[89],"of":[90],"semantic":[91],"similarity.":[92]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
