{"id":"https://openalex.org/W2885934743","doi":"https://doi.org/10.1186/s13326-018-0188-7","title":"EAPB: entropy-aware path-based metric for ontology quality","display_name":"EAPB: entropy-aware path-based metric for ontology quality","publication_year":2018,"publication_date":"2018-08-10","ids":{"openalex":"https://openalex.org/W2885934743","doi":"https://doi.org/10.1186/s13326-018-0188-7","mag":"2885934743","pmid":"https://pubmed.ncbi.nlm.nih.gov/30097014"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-018-0188-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-018-0188-7","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-018-0188-7","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-018-0188-7","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074799043","display_name":"Ying Shen","orcid":"https://orcid.org/0000-0002-3220-904X"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying Shen","raw_affiliation_strings":["Shenzhen Key Lab for Information Centric Networking & Blockchain Technology (ICNLAB), School of Electronics and Computer Engineering, Peking University Shenzhen Graduate School, 518055, Shenzhen, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Key Lab for Information Centric Networking & Blockchain Technology (ICNLAB), School of Electronics and Computer Engineering, Peking University Shenzhen Graduate School, 518055, Shenzhen, People's Republic of China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090695897","display_name":"Daoyuan Chen","orcid":"https://orcid.org/0000-0002-8015-2121"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Daoyuan Chen","raw_affiliation_strings":["Shenzhen Key Lab for Information Centric Networking & Blockchain Technology (ICNLAB), School of Electronics and Computer Engineering, Peking University Shenzhen Graduate School, 518055, Shenzhen, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen Key Lab for Information Centric Networking & Blockchain Technology (ICNLAB), School of Electronics and Computer Engineering, Peking University Shenzhen Graduate School, 518055, Shenzhen, People's Republic of China","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014238603","display_name":"Buzhou Tang","orcid":"https://orcid.org/0000-0003-0271-8246"},"institutions":[{"id":"https://openalex.org/I158809036","display_name":"Shenzhen Institute of Information Technology","ror":"https://ror.org/03wrf9427","country_code":"CN","type":"education","lineage":["https://openalex.org/I158809036"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Buzhou Tang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), 518055, Shenzhen, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology (Shenzhen), 518055, Shenzhen, People's Republic of China","institution_ids":["https://openalex.org/I158809036","https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083369457","display_name":"Min Yang","orcid":"https://orcid.org/0000-0001-7345-5071"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Yang","raw_affiliation_strings":["SIAT, Chinese Academy of Sciences, 518055, Shenzhen, People's Republic of China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"SIAT, Chinese Academy of Sciences, 518055, Shenzhen, People's Republic of China","institution_ids":["https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078920845","display_name":"Kai Lei","orcid":"https://orcid.org/0000-0001-9197-895X"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Kai Lei","raw_affiliation_strings":["Shenzhen Key Lab for Information Centric Networking & Blockchain Technology (ICNLAB), School of Electronics and Computer Engineering, Peking University Shenzhen Graduate School, 518055, Shenzhen, People's Republic of China. leik@pkusz.edu.cn","Shenzhen Key Lab for Information Centric Networking & Blockchain Technology (ICNLAB), School of Electronics and Computer Engineering, Peking University Shenzhen Graduate School, 518055, Shenzhen, People's Republic of China"],"raw_orcid":"https://orcid.org/0000-0001-9197-895X","affiliations":[{"raw_affiliation_string":"Shenzhen Key Lab for Information Centric Networking & Blockchain Technology (ICNLAB), School of Electronics and Computer Engineering, Peking University Shenzhen Graduate School, 518055, Shenzhen, People's Republic of China. leik@pkusz.edu.cn","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"Shenzhen Key Lab for Information Centric Networking & Blockchain Technology (ICNLAB), School of Electronics and Computer Engineering, Peking University Shenzhen Graduate School, 518055, Shenzhen, People's Republic of China","institution_ids":["https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5078920845"],"corresponding_institution_ids":["https://openalex.org/I180726961","https://openalex.org/I20231570"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.1804,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.52330792,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"9","issue":"1","first_page":"20","last_page":"20"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7282000184059143,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7282000184059143,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.06019999831914902,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.05689999833703041,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8070691823959351},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5390090346336365},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5215815901756287},{"id":"https://openalex.org/keywords/entropy","display_name":"Entropy (arrow of time)","score":0.4405614137649536},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.41814807057380676},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.41580110788345337}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8070691823959351},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5390090346336365},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5215815901756287},{"id":"https://openalex.org/C106301342","wikidata":"https://www.wikidata.org/wiki/Q4117933","display_name":"Entropy (arrow of time)","level":2,"score":0.4405614137649536},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.41814807057380676},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.41580110788345337},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/s13326-018-0188-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-018-0188-7","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-018-0188-7","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:30097014","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30097014","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:doaj.org/article:387b33f9eeae4be9a32be5873c55a3c4","is_oa":true,"landing_page_url":"https://doaj.org/article/387b33f9eeae4be9a32be5873c55a3c4","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 9, Iss 1, Pp 1-11 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5040366","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6086046","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-018-0188-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-018-0188-7","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-018-0188-7","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2817746663","display_name":null,"funder_award_id":"No.61602013","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5680510199","display_name":null,"funder_award_id":"61602013","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2885934743.pdf","grobid_xml":"https://content.openalex.org/works/W2885934743.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W165295313","https://openalex.org/W201123831","https://openalex.org/W1483046884","https://openalex.org/W1588594383","https://openalex.org/W1870959433","https://openalex.org/W2014020335","https://openalex.org/W2043139244","https://openalex.org/W2064370471","https://openalex.org/W2074325716","https://openalex.org/W2104591793","https://openalex.org/W2111527574","https://openalex.org/W2125748405","https://openalex.org/W2131158880","https://openalex.org/W2137005667","https://openalex.org/W2142343447","https://openalex.org/W2142675451","https://openalex.org/W2153967630","https://openalex.org/W2159092541","https://openalex.org/W2170436324","https://openalex.org/W2219120503","https://openalex.org/W2242161203","https://openalex.org/W2264105282","https://openalex.org/W2408089595","https://openalex.org/W2484821489","https://openalex.org/W2579372251","https://openalex.org/W2622701666","https://openalex.org/W2790286597","https://openalex.org/W2911266869","https://openalex.org/W4232737687"],"related_works":["https://openalex.org/W2003333417","https://openalex.org/W2378862226","https://openalex.org/W118236634","https://openalex.org/W2355326633","https://openalex.org/W2804669904","https://openalex.org/W2149777447","https://openalex.org/W2347456287","https://openalex.org/W2121651557","https://openalex.org/W2782969047","https://openalex.org/W4401210459"],"abstract_inverted_index":{"BACKGROUND:":[0],"Entropy":[1],"has":[2],"become":[3],"increasingly":[4],"popular":[5],"in":[6,76,182,203],"computer":[7],"science":[8],"and":[9,21,43,51,72,88,100,130,149,155,192,201,208,234,241,248,257],"information":[10,68,74,95,142,191,194,218],"theory":[11],"because":[12],"it":[13],"can":[14,176,213],"be":[15],"used":[16],"to":[17,48,79,195],"measure":[18],"the":[19,66,77,81,85,106,110,118,136,162,165,173,183,197,216,221,245],"predictability":[20],"redundancy":[22],"of":[23,84,109,164,210,250],"knowledge":[24],"bases,":[25],"especially":[26,180],"ontologies.":[27],"However,":[28],"current":[29],"entropy":[30,111,145,204],"applications":[31],"that":[32,172,226],"evaluate":[33,178],"ontologies":[34,129],"consider":[35],"only":[36],"single-point":[37],"connectivity":[38,82,107],"rather":[39],"than":[40],"path":[41,67,78,83,190],"connectivity,":[42],"they":[44],"assign":[45],"equal":[46],"weights":[47,90],"each":[49],"entity":[50],"path.":[52],"RESULTS:":[53],"We":[54,121,188,224],"propose":[55],"an":[56],"Entropy-Aware":[57],"Path-Based":[58],"(EAPB)":[59],"metric":[60],"for":[61,230],"ontology":[62,133,140,232,249],"quality":[63],"by":[64,105],"considering":[65],"between":[69,91],"different":[70,92],"vertices":[71],"textual":[73,193],"included":[75],"calculate":[80],"whole":[86],"network":[87,198],"dynamic":[89],"nodes.":[93],"The":[94,168,206],"obtained":[96],"from":[97,215],"structure-based":[98],"embedding":[99,102],"text-based":[101],"is":[103,114,228],"multiplied":[104],"matrix":[108],"computation.":[112,205],"EAPB":[113,175,227],"analytically":[115],"evaluated":[116],"against":[117],"state-of-the-art":[119],"criteria.":[120],"have":[122],"performed":[123],"empirical":[124],"analysis":[125],"on":[126,135],"real-world":[127],"medical":[128,184],"a":[131,150],"synthetic":[132],"based":[134],"following":[137],"three":[138],"aspects:":[139],"statistical":[141],"(data":[143,147],"quantity),":[144],"evaluation":[146,235],"quality),":[148],"case":[151],"study":[152],"(ontology":[153],"structure":[154,217],"text":[156,222],"visualization).":[157],"These":[158],"aspects":[159],"mutually":[160],"demonstrate":[161],"reliability":[163],"proposed":[166,174],"metric.":[167],"experimental":[169],"results":[170,238],"show":[171],"effectively":[177],"ontologies,":[179],"those":[181],"informatics":[185],"field.":[186],"CONCLUSIONS:":[187],"leverage":[189],"enrich":[196],"representational":[199],"learning":[200],"aid":[202],"analytics":[207],"assessments":[209],"semantic":[211],"web":[212],"benefit":[214],"but":[219],"also":[220],"information.":[223],"believe":[225],"helpful":[229],"managing":[231],"development":[233],"projects.":[236],"Our":[237],"are":[239],"reproducible":[240],"we":[242],"will":[243],"release":[244],"source":[246],"code":[247,256],"this":[251],"work":[252],"after":[253],"publication.":[254],"(Source":[255],"ontology:":[258],"https://github.com/AnonymousResearcher1/ontologyEvaluate":[259],").":[260]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
