{"id":"https://openalex.org/W2887535136","doi":"https://doi.org/10.1186/s13326-018-0187-8","title":"Biomedical ontology alignment: an approach based on representation learning","display_name":"Biomedical ontology alignment: an approach based on representation learning","publication_year":2018,"publication_date":"2018-08-15","ids":{"openalex":"https://openalex.org/W2887535136","doi":"https://doi.org/10.1186/s13326-018-0187-8","mag":"2887535136","pmid":"https://pubmed.ncbi.nlm.nih.gov/30111369"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-018-0187-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-018-0187-8","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-018-0187-8","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-018-0187-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085216417","display_name":"Prodromos Kolyvakis","orcid":"https://orcid.org/0000-0001-8173-744X"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Prodromos Kolyvakis","raw_affiliation_strings":["\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Route Cantonale, Lausanne, 1015, Switzerland. prodromos.kolyvakis@epfl.ch","\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Route Cantonale, Lausanne, 1015, Switzerland"],"raw_orcid":"https://orcid.org/0000-0001-8173-744X","affiliations":[{"raw_affiliation_string":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Route Cantonale, Lausanne, 1015, Switzerland. prodromos.kolyvakis@epfl.ch","institution_ids":["https://openalex.org/I5124864"]},{"raw_affiliation_string":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Route Cantonale, Lausanne, 1015, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084831490","display_name":"Alexandros Kalousis","orcid":"https://orcid.org/0000-0001-6282-0686"},"institutions":[{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Alexandros Kalousis","raw_affiliation_strings":["Business Informatics Department, University of Applied Sciences, HES-SO, Western Switzerland Carouge, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Business Informatics Department, University of Applied Sciences, HES-SO, Western Switzerland Carouge, Switzerland","institution_ids":["https://openalex.org/I173439891"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051216244","display_name":"Barry Smith","orcid":"https://orcid.org/0000-0003-1384-116X"},"institutions":[{"id":"https://openalex.org/I63190737","display_name":"University at Buffalo, State University of New York","ror":"https://ror.org/01y64my43","country_code":"US","type":"education","lineage":["https://openalex.org/I63190737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Barry Smith","raw_affiliation_strings":["Department of Philosophy and Department of Biomedical Informatics, 104 Park Hall, University at Buffalo, Buffalo, 14260, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Philosophy and Department of Biomedical Informatics, 104 Park Hall, University at Buffalo, Buffalo, 14260, NY, USA","institution_ids":["https://openalex.org/I63190737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082500819","display_name":"Dimitris Kiritsis","orcid":"https://orcid.org/0000-0003-3660-9187"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Dimitris Kiritsis","raw_affiliation_strings":["\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Route Cantonale, Lausanne, 1015, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne (EPFL), Route Cantonale, Lausanne, 1015, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5085216417"],"corresponding_institution_ids":["https://openalex.org/I5124864"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":2.3189,"has_fulltext":true,"cited_by_count":52,"citation_normalized_percentile":{"value":0.89327323,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"9","issue":"1","first_page":"21","last_page":"21"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9175000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9175000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.041200000792741776,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.013399999588727951,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8455907106399536},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.6262257099151611},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5952104330062866},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4460309147834778},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.43268248438835144},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.34388184547424316}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8455907106399536},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.6262257099151611},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5952104330062866},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4460309147834778},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.43268248438835144},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34388184547424316},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1186/s13326-018-0187-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-018-0187-8","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-018-0187-8","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:30111369","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30111369","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:philarchive.org/rec/KOLBOA","is_oa":true,"landing_page_url":"https://philarchive.org/rec/KOLBOA","pdf_url":"https://philpapers.org/archive/KOLBOA.pdf","source":{"id":"https://openalex.org/S4306402130","display_name":"PhilPapers (PhilPapers Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:55e13df2e1244b099f554976f3e41e1e","is_oa":true,"landing_page_url":"https://doaj.org/article/55e13df2e1244b099f554976f3e41e1e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 9, Iss 1, Pp 1-20 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:5049549","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6094585","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:hesso.tind.io:2624","is_oa":false,"landing_page_url":"http://arodes.hes-so.ch/record/2624","pdf_url":null,"source":{"id":"https://openalex.org/S4306402432","display_name":"ArODES (HES-SO (https://www.hes-so.ch/))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088449","host_organization_name":"HES-SO Gen\u00e8ve","host_organization_lineage":["https://openalex.org/I4210088449"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arodes.hes-so.ch/record/2624","raw_type":"Text"},{"id":"pmh:oai:infoscience.epfl.ch:258421","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/258421","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"research article"},{"id":"pmh:oai:philpapers.org/rec/KOLBOA","is_oa":false,"landing_page_url":"https://philpapers.org/rec/KOLBOA","pdf_url":null,"source":{"id":"https://openalex.org/S4306402131","display_name":"PhilPapers (PhilPapers Foundation)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/s13326-018-0187-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-018-0187-8","pdf_url":"https://jbiomedsem.biomedcentral.com/track/pdf/10.1186/s13326-018-0187-8","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1615127851","display_name":null,"funder_award_id":"15.0303","funder_id":"https://openalex.org/F4320335238","funder_display_name":"Staatssekretariat f\u00fcr Bildung, Forschung und Innovation"},{"id":"https://openalex.org/G6955001080","display_name":null,"funder_award_id":"688203","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335238","display_name":"Staatssekretariat f\u00fcr Bildung, Forschung und Innovation","ror":"https://ror.org/01kw63t33"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2887535136.pdf","grobid_xml":"https://content.openalex.org/works/W2887535136.grobid-xml"},"referenced_works_count":125,"referenced_works":["https://openalex.org/W6908809","https://openalex.org/W71795751","https://openalex.org/W102861580","https://openalex.org/W110343627","https://openalex.org/W118828598","https://openalex.org/W160306911","https://openalex.org/W260690377","https://openalex.org/W1499399937","https://openalex.org/W1501985518","https://openalex.org/W1502957213","https://openalex.org/W1503259811","https://openalex.org/W1503325810","https://openalex.org/W1508044906","https://openalex.org/W1551684349","https://openalex.org/W1554663460","https://openalex.org/W1555563750","https://openalex.org/W1568062731","https://openalex.org/W1601124178","https://openalex.org/W1606347560","https://openalex.org/W1650610784","https://openalex.org/W1700952868","https://openalex.org/W1802346448","https://openalex.org/W1814992895","https://openalex.org/W1847618513","https://openalex.org/W1851672339","https://openalex.org/W1854884267","https://openalex.org/W1876967670","https://openalex.org/W1964746486","https://openalex.org/W1976119155","https://openalex.org/W2013093146","https://openalex.org/W2022451103","https://openalex.org/W2025768430","https://openalex.org/W2027642881","https://openalex.org/W2047260110","https://openalex.org/W2056065877","https://openalex.org/W2057399676","https://openalex.org/W2059975159","https://openalex.org/W2068115726","https://openalex.org/W2083754659","https://openalex.org/W2102017903","https://openalex.org/W2102153514","https://openalex.org/W2110798204","https://openalex.org/W2111160323","https://openalex.org/W2114388055","https://openalex.org/W2118100588","https://openalex.org/W2118858186","https://openalex.org/W2120699290","https://openalex.org/W2124991490","https://openalex.org/W2130499759","https://openalex.org/W2131555431","https://openalex.org/W2137607259","https://openalex.org/W2137946607","https://openalex.org/W2138139639","https://openalex.org/W2140655242","https://openalex.org/W2144211451","https://openalex.org/W2152175008","https://openalex.org/W2158899491","https://openalex.org/W2159583324","https://openalex.org/W2160674432","https://openalex.org/W2162161257","https://openalex.org/W2163670493","https://openalex.org/W2163685645","https://openalex.org/W2164508904","https://openalex.org/W2167312525","https://openalex.org/W2168231600","https://openalex.org/W2174052796","https://openalex.org/W2175723921","https://openalex.org/W2250539671","https://openalex.org/W2250770256","https://openalex.org/W2250799184","https://openalex.org/W2251507550","https://openalex.org/W2251878275","https://openalex.org/W2271328876","https://openalex.org/W2398857618","https://openalex.org/W2404369708","https://openalex.org/W2404618885","https://openalex.org/W2489487449","https://openalex.org/W2493342586","https://openalex.org/W2507905585","https://openalex.org/W2522389511","https://openalex.org/W2527896214","https://openalex.org/W2540481276","https://openalex.org/W2551706664","https://openalex.org/W2560165255","https://openalex.org/W2585806604","https://openalex.org/W2585944730","https://openalex.org/W2611894836","https://openalex.org/W2614634292","https://openalex.org/W2621614835","https://openalex.org/W2623399293","https://openalex.org/W2733628661","https://openalex.org/W2734330123","https://openalex.org/W2744034267","https://openalex.org/W2748372503","https://openalex.org/W2751936342","https://openalex.org/W2779933443","https://openalex.org/W2795270708","https://openalex.org/W2882319491","https://openalex.org/W2890395128","https://openalex.org/W2899771611","https://openalex.org/W2913602408","https://openalex.org/W2930957955","https://openalex.org/W2949300694","https://openalex.org/W2949547296","https://openalex.org/W2950133940","https://openalex.org/W2950577311","https://openalex.org/W2951765406","https://openalex.org/W2953384591","https://openalex.org/W2963112576","https://openalex.org/W2963502184","https://openalex.org/W2964232431","https://openalex.org/W3021931813","https://openalex.org/W3146347964","https://openalex.org/W4213245422","https://openalex.org/W4241410814","https://openalex.org/W4297785223","https://openalex.org/W4302409392","https://openalex.org/W4302476049","https://openalex.org/W4388297464","https://openalex.org/W4407835674","https://openalex.org/W6630217047","https://openalex.org/W6735751017","https://openalex.org/W6739384892","https://openalex.org/W6828597279","https://openalex.org/W6829887170"],"related_works":["https://openalex.org/W2003333417","https://openalex.org/W2378862226","https://openalex.org/W118236634","https://openalex.org/W2355326633","https://openalex.org/W2804669904","https://openalex.org/W2149777447","https://openalex.org/W2347456287","https://openalex.org/W2121651557","https://openalex.org/W2782969047","https://openalex.org/W4401210459"],"abstract_inverted_index":{"BACKGROUND:":[0],"While":[1],"representation":[2,42,207],"learning":[3,43,208],"techniques":[4],"have":[5,19],"shown":[6,109],"great":[7],"promise":[8],"in":[9,61],"application":[10],"to":[11,48,110,171,175,213,231],"a":[12,40,62,74,97,104,180,237],"number":[13],"of":[14,26,73,88,126,142,193],"different":[15],"NLP":[16],"tasks,":[17],"they":[18],"had":[20],"little":[21],"impact":[22],"on":[23,35,57,70,103,128,156,168,179],"the":[24,49,71,120,133,139,152,157,185,222,232,241],"problem":[25],"ontology":[27,50,115,144,233],"matching.":[28],"Unlike":[29],"past":[30],"work":[31],"that":[32,45,107,221,226],"has":[33],"focused":[34],"feature":[36],"engineering,":[37],"we":[38],"present":[39],"novel":[41,75,98,238],"approach":[44,54,209,223],"is":[46,55,68,108],"tailored":[47,230],"matching":[51,116,234],"task.":[52],"Our":[53,188,205,217],"based":[56,102,178],"embedding":[58,67],"ontological":[59],"terms":[60],"high-dimensional":[63],"Euclidean":[64],"space.":[65],"This":[66,148],"derived":[69,118],"basis":[72],"phrase":[76],"retrofitting":[77],"strategy":[78],"through":[79],"which":[80],"semantic":[81,215],"similarity":[82],"information":[83],"becomes":[84],"inscribed":[85],"onto":[86],"fields":[87],"pre-trained":[89],"word":[90],"vectors.":[91],"The":[92],"resulting":[93],"framework":[94,122],"also":[95],"incorporates":[96],"outlier":[99],"detection":[100],"mechanism":[101],"denoising":[105],"autoencoder":[106],"improve":[111],"performance.":[112],"RESULTS:":[113],"An":[114],"system":[117,189],"using":[119],"proposed":[121,206],"achieved":[123],"an":[124,129],"F-score":[125],"94%":[127],"alignment":[130,182],"scenario":[131],"involving":[132],"Adult":[134],"Mouse":[135],"Anatomical":[136],"Dictionary":[137],"and":[138,174,195],"Foundational":[140],"Model":[141],"Anatomy":[143],"(FMA)":[145],"as":[146],"targets.":[147],"compares":[149],"favorably":[150],"with":[151],"best":[153],"performing":[154],"systems":[155],"Ontology":[158],"Alignment":[159],"Evaluation":[160],"Initiative":[161],"anatomy":[162],"challenge.":[163],"We":[164],"performed":[165],"additional":[166],"experiments":[167],"aligning":[169],"FMA":[170],"NCI":[172],"Thesaurus":[173],"SNOMED":[176],"CT":[177],"reference":[181],"extracted":[183],"from":[184],"UMLS":[186],"Metathesaurus.":[187],"obtained":[190],"overall":[191],"F-scores":[192],"93.2%":[194],"89.2%":[196],"for":[197,240],"these":[198],"experiments,":[199],"thus":[200],"achieving":[201],"state-of-the-art":[202],"results.":[203],"CONCLUSIONS:":[204],"leverages":[210],"terminological":[211],"embeddings":[212,225],"capture":[214],"similarity.":[216],"results":[218],"provide":[219],"evidence":[220],"produces":[224],"are":[227],"especially":[228],"well":[229],"task,":[235],"demonstrating":[236],"pathway":[239],"problem.":[242]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":3}],"updated_date":"2026-05-23T08:51:43.019350","created_date":"2025-10-10T00:00:00"}
