{"id":"https://openalex.org/W2807282567","doi":"https://doi.org/10.1186/s13326-018-0183-z","title":"Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse","display_name":"Extending the DIDEO ontology to include entities from the natural product drug interaction domain of discourse","publication_year":2018,"publication_date":"2018-05-09","ids":{"openalex":"https://openalex.org/W2807282567","doi":"https://doi.org/10.1186/s13326-018-0183-z","mag":"2807282567","pmid":"https://pubmed.ncbi.nlm.nih.gov/29743102"},"language":"en","primary_location":{"id":"doi:10.1186/s13326-018-0183-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-018-0183-z","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-018-0183-z","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-018-0183-z","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109052363","display_name":"J. Judkins","orcid":null},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Judkins","raw_affiliation_strings":["Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035676191","display_name":"Jessica Tay-Sontheimer","orcid":null},"institutions":[{"id":"https://openalex.org/I201448701","display_name":"University of Washington","ror":"https://ror.org/00cvxb145","country_code":"US","type":"education","lineage":["https://openalex.org/I201448701"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jessica Tay-Sontheimer","raw_affiliation_strings":["School of Pharmacy, University of Washington, Seattle, WA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Pharmacy, University of Washington, Seattle, WA, USA","institution_ids":["https://openalex.org/I201448701"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102921689","display_name":"Richard D. Boyce","orcid":"https://orcid.org/0000-0002-2993-2085"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Richard D. Boyce","raw_affiliation_strings":["Department of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047229883","display_name":"Mathias Brochhausen","orcid":"https://orcid.org/0000-0003-1834-3856"},"institutions":[{"id":"https://openalex.org/I2799656382","display_name":"University of Arkansas Medical Center","ror":"https://ror.org/005k4dn45","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799656382"]},{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mathias Brochhausen","raw_affiliation_strings":["Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA. mbrochhausen@uams.edu","Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA"],"raw_orcid":"https://orcid.org/0000-0003-1834-3856","affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA. mbrochhausen@uams.edu","institution_ids":["https://openalex.org/I79620101","https://openalex.org/I2799656382"]},{"raw_affiliation_string":"Department of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA","institution_ids":["https://openalex.org/I79620101"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5047229883"],"corresponding_institution_ids":["https://openalex.org/I2799656382","https://openalex.org/I79620101"],"apc_list":{"value":1190,"currency":"GBP","value_usd":1459},"apc_paid":{"value":1190,"currency":"GBP","value_usd":1459},"fwci":0.6495,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.68142538,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"9","issue":"1","first_page":"15","last_page":"15"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8210999965667725,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.8210999965667725,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.0478999987244606,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.011900000274181366,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7894322276115417},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7733790278434753},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5753100514411926},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5494564771652222},{"id":"https://openalex.org/keywords/interoperability","display_name":"Interoperability","score":0.48490744829177856},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.45813655853271484},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42690855264663696},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.2402559518814087},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.22804951667785645},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20980721712112427}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7894322276115417},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7733790278434753},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5753100514411926},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5494564771652222},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.48490744829177856},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.45813655853271484},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42690855264663696},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.2402559518814087},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.22804951667785645},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20980721712112427},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D001688","descriptor_name":"Biological Products","qualifier_ui":"Q000494","qualifier_name":"pharmacology","is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004347","descriptor_name":"Drug Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/s13326-018-0183-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-018-0183-z","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-018-0183-z","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},{"id":"pmid:29743102","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/29743102","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical semantics","raw_type":null},{"id":"pmh:oai:doaj.org/article:b3941ba95b2641cb8e07f2cf12f47005","is_oa":true,"landing_page_url":"https://doaj.org/article/b3941ba95b2641cb8e07f2cf12f47005","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Journal of Biomedical Semantics, Vol 9, Iss 1, Pp 1-9 (2018)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:4868842","is_oa":true,"landing_page_url":"http://europepmc.org/pmc/articles/PMC5944177","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:5944177","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5944177","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Semantics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/s13326-018-0183-z","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s13326-018-0183-z","pdf_url":"https://jbiomedsem.biomedcentral.com/counter/pdf/10.1186/s13326-018-0183-z","source":{"id":"https://openalex.org/S172276550","display_name":"Journal of Biomedical Semantics","issn_l":"2041-1480","issn":["2041-1480"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Semantics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.4099999964237213,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G1159787265","display_name":null,"funder_award_id":"R01LM011838","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G4576524955","display_name":null,"funder_award_id":"R01 LM011838","funder_id":"https://openalex.org/F4320337372","funder_display_name":"U.S. National Library of Medicine"},{"id":"https://openalex.org/G5787370466","display_name":null,"funder_award_id":"AT008909","funder_id":"https://openalex.org/F4320337593","funder_display_name":"National Center for Complementary and Integrative Health"},{"id":"https://openalex.org/G796941006","display_name":null,"funder_award_id":"U54 AT008909","funder_id":"https://openalex.org/F4320337593","funder_display_name":"National Center for Complementary and Integrative Health"}],"funders":[{"id":"https://openalex.org/F4320310094","display_name":"University of Washington","ror":"https://ror.org/00cvxb145"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"},{"id":"https://openalex.org/F4320337593","display_name":"National Center for Complementary and Integrative Health","ror":"https://ror.org/00190t495"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2807282567.pdf","grobid_xml":"https://content.openalex.org/works/W2807282567.grobid-xml"},"referenced_works_count":20,"referenced_works":["https://openalex.org/W1597538863","https://openalex.org/W1681831155","https://openalex.org/W1999773781","https://openalex.org/W2021074129","https://openalex.org/W2033377040","https://openalex.org/W2113142309","https://openalex.org/W2123152121","https://openalex.org/W2140941260","https://openalex.org/W2159092541","https://openalex.org/W2178026535","https://openalex.org/W2395648879","https://openalex.org/W2464683149","https://openalex.org/W2544373528","https://openalex.org/W2592825827","https://openalex.org/W2593484836","https://openalex.org/W2603968081","https://openalex.org/W2763375162","https://openalex.org/W2793955767","https://openalex.org/W4246066782","https://openalex.org/W4382891066"],"related_works":["https://openalex.org/W2093262417","https://openalex.org/W4312626803","https://openalex.org/W2123131699","https://openalex.org/W650116260","https://openalex.org/W2378329187","https://openalex.org/W4390790060","https://openalex.org/W2134191509","https://openalex.org/W3209454962","https://openalex.org/W79697243","https://openalex.org/W2759030965"],"abstract_inverted_index":{"BACKGROUND:":[0],"Prompted":[1],"by":[2,100],"the":[3,15,20,28,76,79,87,101,131,166,183,187,202,206,210,224,230,235,301,312,349,359,413,435,438,444],"frequency":[4],"of":[5,8,17,22,42,78,111,143,251,261,314,348,383,428,437],"concomitant":[6],"use":[7],"prescription":[9],"drugs":[10],"with":[11,169],"natural":[12,24],"products,":[13],"and":[14,35,58,63,67,81,90,117,145,163,186,192,196,198,221,268,332,354,389,399,431],"lack":[16],"knowledge":[18],"regarding":[19],"impact":[21],"pharmacokinetic-based":[23],"product-drug":[25],"interactions":[26,116],"(PK-NPDIs),":[27],"United":[29],"States":[30],"National":[31],"Center":[32,47],"for":[33,44,97,223,297,308,321,328,425],"Complementary":[34],"Integrative":[36],"Health":[37],"has":[38],"established":[39],"a":[40,50,109,141,249,422],"center":[41],"excellence":[43],"PK-NPDI.":[45],"The":[46],"is":[48,105,176,443],"creating":[49],"public":[51],"database":[52],"to":[53,61,74,94,108,293,305,337,363,374,378,420],"help":[54,377],"researchers":[55],"(primarly":[56],"pharmacologists":[57],"medicinal":[59],"chemists)":[60],"share":[62],"access":[64],"data,":[65],"results,":[66,390],"methods":[68],"from":[69,150,165,284],"PK-NPDI":[70,137,151,429],"studies.":[71],"In":[72,134],"order":[73],"represent":[75],"semantics":[77],"data":[80,102,149],"foster":[82],"interoperability,":[83],"we":[84,123,257,432],"are":[85,237,326,451],"extending":[86],"Drug-Drug":[88],"Interaction":[89],"Evidence":[91],"Ontology":[92],"(DIDEO)":[93],"include":[95],"definitions":[96,146,164,197,222,319],"terms":[98,144,263,283,299,317,347,371,408,450],"used":[99,395,402],"repository.":[103,415],"This":[104,214],"feasible":[106],"due":[107],"number":[110],"similarities":[112],"between":[113],"pharmacokinetic":[114],"drug-drug":[115],"PK-NPDIs.":[118],"METHODS:":[119],"To":[120],"achieve":[121],"this,":[122],"set":[124],"up":[125],"an":[126,156,177,380],"iterative":[127,178],"domain":[128,138,184,231,360],"analysis":[129],"in":[130,153,172,199,209,218,227,239,248,266,271,300,369,385,396,403,440,447],"following":[132],"steps.":[133],"Step":[135,154,173,200,245,255,341,366],"1":[136,246],"experts":[139,185,189,232,361],"produce":[140],"list":[142,167,250,303,351],"based":[147],"on":[148],"studies,":[152],"2":[155,256,342],"ontology":[157,188,203,446],"expert":[158,204],"creates":[159],"ontologically":[160],"appropriate":[161],"classes":[162,208,226],"along":[168],"class":[170,194],"axioms,":[171],"3":[174],"there":[175],"editing":[179],"process":[180],"during":[181],"which":[182,448],"review,":[190],"assess,":[191],"amend":[193],"labels":[195,220],"4":[201,367],"implements":[205],"new":[207,225,298],"DIDEO":[211,228,240,338,375,419,442],"development":[212],"branch.":[213],"workflow":[215],"often":[216],"results":[217],"different":[219],"than":[229],"initially":[233],"provided;":[234],"latter":[236],"preserved":[238],"as":[241,295],"separate":[242],"annotations.":[243],"RESULTS:":[244],"resulted":[247,368],"344":[252],"terms.":[253,310],"During":[254],"found":[258,418],"that":[259,345,376,441],"9":[260],"these":[262,309],"already":[264],"existed":[265,270],"DIDEO,":[267],"6":[269,277],"other":[272],"OBO":[273,286],"Foundry":[274,287],"ontologies.":[275],"These":[276,407],"were":[278,289,352,410],"imported":[279],"into":[280,412],"DIDEO;":[281],"additional":[282,381],"multiple":[285],"ontologies":[288],"also":[290,343,409],"imported,":[291],"either":[292],"serve":[294],"superclasses":[296],"initial":[302],"or":[304],"build":[306],"axioms":[307],"At":[311],"time":[313],"writing,":[315],"7":[316],"have":[318,334,433],"ready":[320,327],"review":[322],"(Step":[323,330,339],"2),":[324],"64":[325],"implementation":[329],"3)":[331],"112":[333],"been":[335],"pushed":[336],"4).":[340],"suggested":[344],"26":[346],"original":[350],"redundant":[353],"did":[355],"not":[356],"need":[357],"implementation;":[358],"agreed":[362],"remove":[364],"them.":[365],"many":[370],"being":[372],"added":[373],"provide":[379,421],"layer":[382],"granularity":[384],"describing":[386],"experimental":[387],"conditions":[388],"e.g.":[391],"transfected":[392],"cultured":[393],"cells":[394],"metabolism":[397],"studies":[398],"chemical":[400],"reactions":[401],"measuring":[404],"enzyme":[405],"activity.":[406],"integrated":[411],"NaPDI":[414],"CONCLUSION:":[416],"We":[417],"sound":[423],"foundation":[424],"semantic":[426],"representation":[427],"terms,":[430],"shown":[434],"novelty":[436],"project":[439],"only":[445],"NPDI":[449],"formally":[452],"defined.":[453]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
